| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is 115352079
Identifier: 115352079
GI number: 115352079
Start: 2222745
End: 2223428
Strand: Direct
Name: 115352079
Synonym: Bamb_2028
Alternate gene names: NA
Gene position: 2222745-2223428 (Clockwise)
Preceding gene: 115352078
Following gene: 115352080
Centisome position: 62.5
GC content: 70.76
Gene sequence:
>684_bases ATGAAACGCTCCACCGCAAACATCCTCCGCGAATACGGCCCGTTTCCGGGCGGCGACGGCGTGCACGGCGTCACGTTCGA TGGGCAGCACGTGTGGTTCGCATCCGGCGACAAGCTGAACGCGCTCGACCCGGAACGCGGCACGACCGTGCGCACACTCG ACGTCGCCGCGCACGCGGGCACCGCGTTCGACGGGCGCCATCTGTTCCAGATCGTCGAGGACCGCATCGAGAAGATCGAT CCCGATTCGGGCCGCGTGCTCGCGACGATACCCGCGCCCGGCGGCGGTGCCGATTCCGGGCTCGCGTGGGCCGAAGGCAC GCTGTGGGTCGGCCAATACCGCGAGCGAAAGATTCATCAGGTGGATCCGCAATCGGGCGCCGTGCTGCGCACGATCGAAT CGAACCGCTTCGTCACCGGCGTGACGTGGGTCGACGGCGAGCTGTGGCACGGCACCTGGGAGGCGGACGAGAGCGAGCTG CGGCGGATCGACCCGCGCACCGGGCAGGTGCTCGAGCAGGTCGACATGCCGCCTGGCGTCGGCGTGTCGGGGCTGGAGTC CGACGGTCGCGACACGTTCTACTGCGGCGGCGGCAACAGCGGCAAGCTGCGCGCCGTACGCCGCCCCGCGCGGTCATCCG CGGCGGGCGACAGTGCGGCGGCGGCCGAACCGGCCGAGGGCTGA
Upstream 100 bases:
>100_bases CTGGATGACGCCGCCGCTGCCCGGATTCGCGACGACCTTGTTACTCCCCGCACCGCTGCCGGGCGACTAGGATGGGTACA CCAACGACGAGGCGACAGAC
Downstream 100 bases:
>100_bases TCCGCCGGTCGTCGCAGGGCGTGCCTACGCGCCGCGATCCGCGATCCGCGACAAAGAGGACCGGATCGCGGCCGATCCCG AACCTCACCCGCTTCCGAGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 227; Mature: 227
Protein sequence:
>227_residues MKRSTANILREYGPFPGGDGVHGVTFDGQHVWFASGDKLNALDPERGTTVRTLDVAAHAGTAFDGRHLFQIVEDRIEKID PDSGRVLATIPAPGGGADSGLAWAEGTLWVGQYRERKIHQVDPQSGAVLRTIESNRFVTGVTWVDGELWHGTWEADESEL RRIDPRTGQVLEQVDMPPGVGVSGLESDGRDTFYCGGGNSGKLRAVRRPARSSAAGDSAAAAEPAEG
Sequences:
>Translated_227_residues MKRSTANILREYGPFPGGDGVHGVTFDGQHVWFASGDKLNALDPERGTTVRTLDVAAHAGTAFDGRHLFQIVEDRIEKID PDSGRVLATIPAPGGGADSGLAWAEGTLWVGQYRERKIHQVDPQSGAVLRTIESNRFVTGVTWVDGELWHGTWEADESEL RRIDPRTGQVLEQVDMPPGVGVSGLESDGRDTFYCGGGNSGKLRAVRRPARSSAAGDSAAAAEPAEG >Mature_227_residues MKRSTANILREYGPFPGGDGVHGVTFDGQHVWFASGDKLNALDPERGTTVRTLDVAAHAGTAFDGRHLFQIVEDRIEKID PDSGRVLATIPAPGGGADSGLAWAEGTLWVGQYRERKIHQVDPQSGAVLRTIESNRFVTGVTWVDGELWHGTWEADESEL RRIDPRTGQVLEQVDMPPGVGVSGLESDGRDTFYCGGGNSGKLRAVRRPARSSAAGDSAAAAEPAEG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24261; Mature: 24261
Theoretical pI: Translated: 4.98; Mature: 4.98
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRSTANILREYGPFPGGDGVHGVTFDGQHVWFASGDKLNALDPERGTTVRTLDVAAHAG CCCHHHHHHHHHCCCCCCCCCEEEEECCCEEEEECCCCCCCCCCCCCCEEEEEEEECCCC TAFDGRHLFQIVEDRIEKIDPDSGRVLATIPAPGGGADSGLAWAEGTLWVGQYRERKIHQ CCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCEEECCEEEECCHHCCCCEE VDPQSGAVLRTIESNRFVTGVTWVDGELWHGTWEADESELRRIDPRTGQVLEQVDMPPGV CCCCCCEEEEEECCCCEEEEEEEECCEEECCCCCCCHHHHHHCCCCHHHHHHHHCCCCCC GVSGLESDGRDTFYCGGGNSGKLRAVRRPARSSAAGDSAAAAEPAEG CCCCCCCCCCEEEEECCCCCCCCCEECCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MKRSTANILREYGPFPGGDGVHGVTFDGQHVWFASGDKLNALDPERGTTVRTLDVAAHAG CCCHHHHHHHHHCCCCCCCCCEEEEECCCEEEEECCCCCCCCCCCCCCEEEEEEEECCCC TAFDGRHLFQIVEDRIEKIDPDSGRVLATIPAPGGGADSGLAWAEGTLWVGQYRERKIHQ CCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCEEECCEEEECCHHCCCCEE VDPQSGAVLRTIESNRFVTGVTWVDGELWHGTWEADESELRRIDPRTGQVLEQVDMPPGV CCCCCCEEEEEECCCCEEEEEEEECCEEECCCCCCCHHHHHHCCCCHHHHHHHHCCCCCC GVSGLESDGRDTFYCGGGNSGKLRAVRRPARSSAAGDSAAAAEPAEG CCCCCCCCCCEEEEECCCCCCCCCEECCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA