Definition Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence.
Accession NC_008390
Length 3,556,545

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The map label for this gene is 115352034

Identifier: 115352034

GI number: 115352034

Start: 2180256

End: 2181074

Strand: Direct

Name: 115352034

Synonym: Bamb_1983

Alternate gene names: NA

Gene position: 2180256-2181074 (Clockwise)

Preceding gene: 115352024

Following gene: 115352035

Centisome position: 61.3

GC content: 70.09

Gene sequence:

>819_bases
ATGGCTGATTCGAGCGCCGCACACTGGTATCCGACCGCCGCGTATCTCTACGCGCTGCATCTCGATGGTCCCGCGCTGGC
TTGGGAGTACCTGCGCAGGAATCTCGACTATCGCCGCGACTGGCTGCGCCGTCGCCGCAGGCCGGAGGTGGCGCACGCCT
GGGGCTTGCGCCTGCTTGAGGACCCGGCCCTGGATGCGCGCGACGCGCATCCGACCTGGTTCCCCGACCACGATGCCGTG
GTGCAGCTTTACCCCGATGCCGATCCGCCACCCGACGCCTATGCCTTCGACTTCTGGCGCGTCCCAGGCCGCAAGCAACT
GGTCCATGACGGCAAGCGTCTGGTGCTGGTGTCGCACTGGCCAGGCTGCTGCCTGCGGCTTGCGCTGGCGCCGGGGCTGG
AAGACGGCATGGCCTACCTCTACGCGACCCGCGCCTGCGCCACGCCTTGCGCGCGCTATCGCACGTTCGCGGCCGAGCTG
GACGCCTTGGCCTTGGCGACGGCTGCCGCGCCTGCGGCGGCGGCCCGTTCCCGGCCCACGCCCGCCGCGCTGCTGGAACT
ACACACGCTTCAGGCGCTCGACGCGACCCTGACGGGCGCGTCTCTGCGCGAAGTGGCCGAGGGACTGTTCGGCGCGGATG
CCGTCGCGGCTGACTGGCACAAGGACAGCGCCTTGCGTGCCCGCGTGCGGCGGCTGGTACGCCGTGGCGATGCGCTGATG
CGCGCCGGCTATCGCCGCCTGGCACAGCTTCCGTCATTCCCCTGCACTAGCGGAGATAAGAGGGGGGACGTTTCGCATCC
CCTGCAAGTCGTCCCTTAG

Upstream 100 bases:

>100_bases
TGCAGCTTCCCGATTTTGATGGCCGTTTGATGTTGAAGCGGTAGCTCCCGCAAGCCCAAATTCACAGCGACGTTCCTGCT
GATCGACAGGAGGTTGCGTC

Downstream 100 bases:

>100_bases
CAAGAAGCCTTGCTTTCTTGAAAGTGCCTCTATCCGGCCGCGTAGTGTGGCCGGGCTTGATGGAGGTACATCCCATGCGA
CCCGCTCCCTTGCGGCCTGC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 272; Mature: 271

Protein sequence:

>272_residues
MADSSAAHWYPTAAYLYALHLDGPALAWEYLRRNLDYRRDWLRRRRRPEVAHAWGLRLLEDPALDARDAHPTWFPDHDAV
VQLYPDADPPPDAYAFDFWRVPGRKQLVHDGKRLVLVSHWPGCCLRLALAPGLEDGMAYLYATRACATPCARYRTFAAEL
DALALATAAAPAAAARSRPTPAALLELHTLQALDATLTGASLREVAEGLFGADAVAADWHKDSALRARVRRLVRRGDALM
RAGYRRLAQLPSFPCTSGDKRGDVSHPLQVVP

Sequences:

>Translated_272_residues
MADSSAAHWYPTAAYLYALHLDGPALAWEYLRRNLDYRRDWLRRRRRPEVAHAWGLRLLEDPALDARDAHPTWFPDHDAV
VQLYPDADPPPDAYAFDFWRVPGRKQLVHDGKRLVLVSHWPGCCLRLALAPGLEDGMAYLYATRACATPCARYRTFAAEL
DALALATAAAPAAAARSRPTPAALLELHTLQALDATLTGASLREVAEGLFGADAVAADWHKDSALRARVRRLVRRGDALM
RAGYRRLAQLPSFPCTSGDKRGDVSHPLQVVP
>Mature_271_residues
ADSSAAHWYPTAAYLYALHLDGPALAWEYLRRNLDYRRDWLRRRRRPEVAHAWGLRLLEDPALDARDAHPTWFPDHDAVV
QLYPDADPPPDAYAFDFWRVPGRKQLVHDGKRLVLVSHWPGCCLRLALAPGLEDGMAYLYATRACATPCARYRTFAAELD
ALALATAAAPAAAARSRPTPAALLELHTLQALDATLTGASLREVAEGLFGADAVAADWHKDSALRARVRRLVRRGDALMR
AGYRRLAQLPSFPCTSGDKRGDVSHPLQVVP

Specific function: Unknown

COG id: COG5419

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30190; Mature: 30058

Theoretical pI: Translated: 8.70; Mature: 8.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADSSAAHWYPTAAYLYALHLDGPALAWEYLRRNLDYRRDWLRRRRRPEVAHAWGLRLLE
CCCCCCCCCCCHHHEEEEEECCCHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHCCHHHC
DPALDARDAHPTWFPDHDAVVQLYPDADPPPDAYAFDFWRVPGRKQLVHDGKRLVLVSHW
CCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEHEECCCCHHHHHCCCCEEEEEECC
PGCCLRLALAPGLEDGMAYLYATRACATPCARYRTFAAELDALALATAAAPAAAARSRPT
CHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PAALLELHTLQALDATLTGASLREVAEGLFGADAVAADWHKDSALRARVRRLVRRGDALM
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHH
RAGYRRLAQLPSFPCTSGDKRGDVSHPLQVVP
HHHHHHHHHCCCCCCCCCCCCCCCCCCCEECC
>Mature Secondary Structure 
ADSSAAHWYPTAAYLYALHLDGPALAWEYLRRNLDYRRDWLRRRRRPEVAHAWGLRLLE
CCCCCCCCCCHHHEEEEEECCCHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHCCHHHC
DPALDARDAHPTWFPDHDAVVQLYPDADPPPDAYAFDFWRVPGRKQLVHDGKRLVLVSHW
CCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEHEECCCCHHHHHCCCCEEEEEECC
PGCCLRLALAPGLEDGMAYLYATRACATPCARYRTFAAELDALALATAAAPAAAARSRPT
CHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PAALLELHTLQALDATLTGASLREVAEGLFGADAVAADWHKDSALRARVRRLVRRGDALM
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHH
RAGYRRLAQLPSFPCTSGDKRGDVSHPLQVVP
HHHHHHHHHCCCCCCCCCCCCCCCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA