| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is 115351997
Identifier: 115351997
GI number: 115351997
Start: 2143792
End: 2144985
Strand: Direct
Name: 115351997
Synonym: Bamb_1946
Alternate gene names: NA
Gene position: 2143792-2144985 (Clockwise)
Preceding gene: 115351996
Following gene: 115352010
Centisome position: 60.28
GC content: 64.24
Gene sequence:
>1194_bases ATGGAAGGCTTCATCACCGACTGGCTGAACCTCGCGCTGCGATGGCTGCACGTCATCGTCGCCATTGCGTGGATCGGCGA GTCGTTCTATTTCGTCGCGCTCGACAACAGCCTGAAACCGCCGACCGACGCGAACCAGCGCAAGCGCGGCGTGTTCGGCG AGCTGTGGCACGTCCACGGCGGCGGTTTCTACAACATGCAGAAGTACACGGTCGCCCCGCCGGAAATGCCGGATGACCTG CACTGGTCGAAGTGGCCGTCGTACACGACCTGGCTGTCGGGCTTCTCGTTGTTCTTCGTGCTGTACCTGCTCGCACCGAA CACCTACCTGATCGACAAGAGCGTGCTCGACATGGGCCCGGTCGTCGCCGTCGCATCCGCGCTCGGCTTCCTCGCGGCCG GCTGGATCGTCTACGACTCGCTGTGCCGCATCCTCGGCACCAACGATCGCGTGCTGGGCATCTGCGTGGGCCTCTACGTC GTCGTCGCCGCGTATCTTGCGTGCCACATCTTCGCGGGCCGTGCGGCGTACCTGATCGTCGGCGCGATGCTCGCGACGAT CATGTCGGCGAACGTGTTCTTCGTGATCATCCCGGGCCAGCGCAAGATGGTCGACAAGATGCTCAAGGGCGAAGAGCCGA ACCCGATCTACGGCAAGCGCGGCAAGCAGCGCTCGGTGCACAACACGTATTTCACGCTGCCGGTCGTGTTCGCGATGCTG TCGAACCACTATGCGATGACGTACACGAACAAGTTCAACTGGGTCGTGCTCGTGCTGATCATGCTGGCCGGCGCGCTGAT CCGTCAGTTCTTTGTGATGCGTCACCGCGGCCAGCAGCTGTGGTACCTGCCGATCGGCGGCGTCGCCCTGCTGTCGGGCG CGCTCGTGTGGACGATGCCGAAGCCGGTCGCACCGGAAGCGCAGGCCGCGAACGCCCCGAAGATCGCGATCAACGACATC ATGCCGATCCTGCAGCAGCGCTGCGTCGAGTGCCACTCGGCCAAGCCGACGCTGATGGGCAGCGCGCCCGCCGGCGTGAT GTTCGACACGCCCGATGAAGTGTCGAAGAACGCGCAGCGCATCTACGAACAGGCCGTGCGCCTGAAGGCGATGCCGATCG GCAACGTCACGCATATGACCGACGACGAGCGCGTGAAGCTCGCCGCCTGGTTCGAGGGCGGCGCGGTCAAGTAA
Upstream 100 bases:
>100_bases CGCTGCTCGTGTCGCCGTGGTCGTACAGCACCTATCGCGGCAGCTGACACACGCATCGGCGCCCGCATCAAAGATAACGA TCTGAGTCTGGAGGAGTTTC
Downstream 100 bases:
>100_bases GCCGCCGGGCGCCGGCGGTTGGTTGCCGGCACACCTCTCCGTTCGCGGGCCCGGAAACGGGCCCGTTTTTTTGCCTGTAC GAAATGCGTCGCCCGCTAGC
Product: hypothetical protein
Products: NA
Alternate protein names: Transmembrane Protein; Cytochrome C Subfamily; Cytochrome C Region
Number of amino acids: Translated: 397; Mature: 397
Protein sequence:
>397_residues MEGFITDWLNLALRWLHVIVAIAWIGESFYFVALDNSLKPPTDANQRKRGVFGELWHVHGGGFYNMQKYTVAPPEMPDDL HWSKWPSYTTWLSGFSLFFVLYLLAPNTYLIDKSVLDMGPVVAVASALGFLAAGWIVYDSLCRILGTNDRVLGICVGLYV VVAAYLACHIFAGRAAYLIVGAMLATIMSANVFFVIIPGQRKMVDKMLKGEEPNPIYGKRGKQRSVHNTYFTLPVVFAML SNHYAMTYTNKFNWVVLVLIMLAGALIRQFFVMRHRGQQLWYLPIGGVALLSGALVWTMPKPVAPEAQAANAPKIAINDI MPILQQRCVECHSAKPTLMGSAPAGVMFDTPDEVSKNAQRIYEQAVRLKAMPIGNVTHMTDDERVKLAAWFEGGAVK
Sequences:
>Translated_397_residues MEGFITDWLNLALRWLHVIVAIAWIGESFYFVALDNSLKPPTDANQRKRGVFGELWHVHGGGFYNMQKYTVAPPEMPDDL HWSKWPSYTTWLSGFSLFFVLYLLAPNTYLIDKSVLDMGPVVAVASALGFLAAGWIVYDSLCRILGTNDRVLGICVGLYV VVAAYLACHIFAGRAAYLIVGAMLATIMSANVFFVIIPGQRKMVDKMLKGEEPNPIYGKRGKQRSVHNTYFTLPVVFAML SNHYAMTYTNKFNWVVLVLIMLAGALIRQFFVMRHRGQQLWYLPIGGVALLSGALVWTMPKPVAPEAQAANAPKIAINDI MPILQQRCVECHSAKPTLMGSAPAGVMFDTPDEVSKNAQRIYEQAVRLKAMPIGNVTHMTDDERVKLAAWFEGGAVK >Mature_397_residues MEGFITDWLNLALRWLHVIVAIAWIGESFYFVALDNSLKPPTDANQRKRGVFGELWHVHGGGFYNMQKYTVAPPEMPDDL HWSKWPSYTTWLSGFSLFFVLYLLAPNTYLIDKSVLDMGPVVAVASALGFLAAGWIVYDSLCRILGTNDRVLGICVGLYV VVAAYLACHIFAGRAAYLIVGAMLATIMSANVFFVIIPGQRKMVDKMLKGEEPNPIYGKRGKQRSVHNTYFTLPVVFAML SNHYAMTYTNKFNWVVLVLIMLAGALIRQFFVMRHRGQQLWYLPIGGVALLSGALVWTMPKPVAPEAQAANAPKIAINDI MPILQQRCVECHSAKPTLMGSAPAGVMFDTPDEVSKNAQRIYEQAVRLKAMPIGNVTHMTDDERVKLAAWFEGGAVK
Specific function: Unknown
COG id: COG3748
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44195; Mature: 44195
Theoretical pI: Translated: 9.17; Mature: 9.17
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 5.8 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 4.5 %Met (Mature Protein) 5.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEGFITDWLNLALRWLHVIVAIAWIGESFYFVALDNSLKPPTDANQRKRGVFGELWHVHG CCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHCCCHHHHEEECC GGFYNMQKYTVAPPEMPDDLHWSKWPSYTTWLSGFSLFFVLYLLAPNTYLIDKSVLDMGP CCEECCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECHHHHHCCH VVAVASALGFLAAGWIVYDSLCRILGTNDRVLGICVGLYVVVAAYLACHIFAGRAAYLIV HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH GAMLATIMSANVFFVIIPGQRKMVDKMLKGEEPNPIYGKRGKQRSVHNTYFTLPVVFAML HHHHHHHHCCCEEEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH SNHYAMTYTNKFNWVVLVLIMLAGALIRQFFVMRHRGQQLWYLPIGGVALLSGALVWTMP HCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHCCCEEEECC KPVAPEAQAANAPKIAINDIMPILQQRCVECHSAKPTLMGSAPAGVMFDTPDEVSKNAQR CCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCEECCCCCCCEECCHHHHHHHHHH IYEQAVRLKAMPIGNVTHMTDDERVKLAAWFEGGAVK HHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCCC >Mature Secondary Structure MEGFITDWLNLALRWLHVIVAIAWIGESFYFVALDNSLKPPTDANQRKRGVFGELWHVHG CCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHCCCHHHHEEECC GGFYNMQKYTVAPPEMPDDLHWSKWPSYTTWLSGFSLFFVLYLLAPNTYLIDKSVLDMGP CCEECCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECHHHHHCCH VVAVASALGFLAAGWIVYDSLCRILGTNDRVLGICVGLYVVVAAYLACHIFAGRAAYLIV HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH GAMLATIMSANVFFVIIPGQRKMVDKMLKGEEPNPIYGKRGKQRSVHNTYFTLPVVFAML HHHHHHHHCCCEEEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH SNHYAMTYTNKFNWVVLVLIMLAGALIRQFFVMRHRGQQLWYLPIGGVALLSGALVWTMP HCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHCCCEEEECC KPVAPEAQAANAPKIAINDIMPILQQRCVECHSAKPTLMGSAPAGVMFDTPDEVSKNAQR CCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCEECCCCCCCEECCHHHHHHHHHH IYEQAVRLKAMPIGNVTHMTDDERVKLAAWFEGGAVK HHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA