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The map label for this gene is yvoA [H]

Identifier: 115352010

GI number: 115352010

Start: 2156188

End: 2156958

Strand: Direct

Name: yvoA [H]

Synonym: Bamb_1959

Alternate gene names: 115352010

Gene position: 2156188-2156958 (Clockwise)

Preceding gene: 115351997

Following gene: 115352011

Centisome position: 60.63

GC content: 66.54

Gene sequence:

>771_bases
ATGACCCAACCCAACGTCGTGCCGCTGTCGGCGGCCCCGCTCTACGTGCAGATCAAGGACACGCTGCGCGCACGGATCCT
CGACGGCACCTATGCGCCGCACAGCCGGATGCCGTCCGAGCACGAACTGTGCGCGATGTTCGACGTGAGCCGCATCACCG
TGCGCCAGGCGCTCGGCGACCTGCAGAAGGAAGGCCTGCTGTTCAAGTTGCACGGCAAGGGCACCTTCGTGTCGAAGCCG
AAGGCGTTCCAGAATGTGACGTCGCTGCAGGGCTTCGCCGAGGCGATGTCGTCGATGGGCTACGAGATCGTCAACCAGCT
GCGCAGCGTTCGCACCGTGAAGGCCGACCGCCATCTCGCGACGAAGCTGAACGTGCCGGAAGGCGCGCCGCTCGTCGAGA
TCCACCGCGTGCGGCTGCTCAACCGCGAGCCCGTGTCGCTCGAGCAGACGTGGGTGCCCGAGGCGCTCGGCAAGCGGCTC
GCGGGCGCGGATCTCGCGACCCGCGACATCTTCCTGATCCTCGAGAACGACTGCGGCGTGCCGCTCGGCCACGCCGACGT
GTCGATCGACGCGATCCTCGCCGACGATGAAATCGTCGATGCGCTGCGCGTCGAGGAAAGCAGCCCCGTGCTGCGTATCG
AGCGCCTGACGCACGACGCGTCGGGCACACCGATCGACTACGAACACCTGTACTTCCGCGGCGACGCCTTCCAGTACCGG
TTGCGCATCGATCGGCAGAAGGCGCTCCAACCTGCAAGGAACCCGCAATGA

Upstream 100 bases:

>100_bases
CCGCTTTTCCGGAATCGGAAAGTCGAAATCAGAAATCGTTGGTTTGGACGCGCGAGCGCGCTCACTACACTCGAGCCATC
TTGTCATAACAAGTTGACCG

Downstream 100 bases:

>100_bases
ATACCCATGTACTCGAATACGACATCGTCGTGGTCGGCGGCGGCACGGCCGGCCCGATGGCCGCGATCAAGGCCAAGGAG
CGCGACCCGTCGCTGCGCGT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 256; Mature: 255

Protein sequence:

>256_residues
MTQPNVVPLSAAPLYVQIKDTLRARILDGTYAPHSRMPSEHELCAMFDVSRITVRQALGDLQKEGLLFKLHGKGTFVSKP
KAFQNVTSLQGFAEAMSSMGYEIVNQLRSVRTVKADRHLATKLNVPEGAPLVEIHRVRLLNREPVSLEQTWVPEALGKRL
AGADLATRDIFLILENDCGVPLGHADVSIDAILADDEIVDALRVEESSPVLRIERLTHDASGTPIDYEHLYFRGDAFQYR
LRIDRQKALQPARNPQ

Sequences:

>Translated_256_residues
MTQPNVVPLSAAPLYVQIKDTLRARILDGTYAPHSRMPSEHELCAMFDVSRITVRQALGDLQKEGLLFKLHGKGTFVSKP
KAFQNVTSLQGFAEAMSSMGYEIVNQLRSVRTVKADRHLATKLNVPEGAPLVEIHRVRLLNREPVSLEQTWVPEALGKRL
AGADLATRDIFLILENDCGVPLGHADVSIDAILADDEIVDALRVEESSPVLRIERLTHDASGTPIDYEHLYFRGDAFQYR
LRIDRQKALQPARNPQ
>Mature_255_residues
TQPNVVPLSAAPLYVQIKDTLRARILDGTYAPHSRMPSEHELCAMFDVSRITVRQALGDLQKEGLLFKLHGKGTFVSKPK
AFQNVTSLQGFAEAMSSMGYEIVNQLRSVRTVKADRHLATKLNVPEGAPLVEIHRVRLLNREPVSLEQTWVPEALGKRLA
GADLATRDIFLILENDCGVPLGHADVSIDAILADDEIVDALRVEESSPVLRIERLTHDASGTPIDYEHLYFRGDAFQYRL
RIDRQKALQPARNPQ

Specific function: Acts as a weak repressor of yflG expression [H]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790118, Length=231, Percent_Identity=28.1385281385281, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI87082252, Length=219, Percent_Identity=26.9406392694064, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1786950, Length=240, Percent_Identity=26.25, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1788418, Length=227, Percent_Identity=25.1101321585903, Blast_Score=86, Evalue=3e-18,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 28596; Mature: 28465

Theoretical pI: Translated: 6.96; Mature: 6.96

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQPNVVPLSAAPLYVQIKDTLRARILDGTYAPHSRMPSEHELCAMFDVSRITVRQALGD
CCCCCEEEECCCCEEEEEHHHHHHHHHCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHH
LQKEGLLFKLHGKGTFVSKPKAFQNVTSLQGFAEAMSSMGYEIVNQLRSVRTVKADRHLA
HHHCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHH
TKLNVPEGAPLVEIHRVRLLNREPVSLEQTWVPEALGKRLAGADLATRDIFLILENDCGV
EECCCCCCCCHHHEEEEHHCCCCCCCCHHHCCHHHHHHHHCCCCCCCCEEEEEEECCCCC
PLGHADVSIDAILADDEIVDALRVEESSPVLRIERLTHDASGTPIDYEHLYFRGDAFQYR
CCCCCCCEEEEEECCHHHHHHHHCCCCCCEEEEEEHHCCCCCCCCCHHEEEEECCEEEEE
LRIDRQKALQPARNPQ
EEECHHHHCCCCCCCC
>Mature Secondary Structure 
TQPNVVPLSAAPLYVQIKDTLRARILDGTYAPHSRMPSEHELCAMFDVSRITVRQALGD
CCCCEEEECCCCEEEEEHHHHHHHHHCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHH
LQKEGLLFKLHGKGTFVSKPKAFQNVTSLQGFAEAMSSMGYEIVNQLRSVRTVKADRHLA
HHHCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHH
TKLNVPEGAPLVEIHRVRLLNREPVSLEQTWVPEALGKRLAGADLATRDIFLILENDCGV
EECCCCCCCCHHHEEEEHHCCCCCCCCHHHCCHHHHHHHHCCCCCCCCEEEEEEECCCCC
PLGHADVSIDAILADDEIVDALRVEESSPVLRIERLTHDASGTPIDYEHLYFRGDAFQYR
CCCCCCCEEEEEECCHHHHHHHHCCCCCCEEEEEEHHCCCCCCCCCHHEEEEECCEEEEE
LRIDRQKALQPARNPQ
EEECHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]