| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is 115351834
Identifier: 115351834
GI number: 115351834
Start: 1970895
End: 1971506
Strand: Direct
Name: 115351834
Synonym: Bamb_1783
Alternate gene names: NA
Gene position: 1970895-1971506 (Clockwise)
Preceding gene: 115351831
Following gene: 115351835
Centisome position: 55.42
GC content: 70.1
Gene sequence:
>612_bases ATGCTGAAAAAGCTGCTGATGCTGTTCGTCGCGCTGTCGCTGTCGCTTGCCGCCGGCCTCGCCGCGGCCGTCGAAGTCAA CACGGCCGATCAGGCCGCGCTCGAAGCGGTGAAGGGGCTCGGGCCCGTGAAGTCGAAGGCGATCATCGACGAACGCACCA AGAACGGCCCGTTCAAGGACGCGGACGATCTCGCGAACCGCGTGAAGGGTCTCGGCACGAAGTCGGTCGGGCATCTCGAG GAAAACGGCCTGACGATCGGCGGCTCGTCGACGCCGCCGAAGGGCGTGAAGCTGTCGAAGCCGGCCGCGACGACGTCGGC AACCACGTCGGCCACGACGTCGGCAGGCACCGCATCGACGCCGACGACCACGACGACCGGCACGACGGCAACCGCACCGG CCGCCAGCGCGCCGGAAGCGGCGGCCAAGCCGGCCAAGAGCAAGCGCGCATCGAAGAAGGAGAAGGCGGCCGCAGCCGCG GCGGCATCCGCCGATGCAGGCGCGGGCGCGAGCGCGCCGGCCGCGGCGTCGTCCACGAAGGCGACCAAGGGTTCGAAGAA GAAGAGCAAGAAGGACAAGGCAGCCTCCGCCGCCGCGGCGTCGGGCGCCTGA
Upstream 100 bases:
>100_bases GCACGCATTTGTCCTATGCTTAACGGCGACGCCCGGCCGGGCCTCGTCCAGTCGTCCGTTGCAACGCCCATTCATCCGTC AGAACCAGGGAGCCCTTGCC
Downstream 100 bases:
>100_bases TGTGCGTCGCGCGCGCGACGGCGTGCGCGCGGCTTTCGATCAACGGGCGCCGTTGCTGCGGCGCCCTTTTCAGTGAAGGT GAAGAACCATGGGTCTCCTC
Product: hypothetical protein
Products: NA
Alternate protein names: DNA Uptake Protein; ComEA-Related Signal Peptide Protein; Competence Protein ComEA Helix-Hairpin-Helix Region; DNA Uptake Protein ComEA-Like; Helix-Turn-Helix Protein; Helix-Hairpin-Helix Motif; ComE Protein; Helix-Hairpin-Helix Motif Protein
Number of amino acids: Translated: 203; Mature: 203
Protein sequence:
>203_residues MLKKLLMLFVALSLSLAAGLAAAVEVNTADQAALEAVKGLGPVKSKAIIDERTKNGPFKDADDLANRVKGLGTKSVGHLE ENGLTIGGSSTPPKGVKLSKPAATTSATTSATTSAGTASTPTTTTTGTTATAPAASAPEAAAKPAKSKRASKKEKAAAAA AASADAGAGASAPAAASSTKATKGSKKKSKKDKAASAAAASGA
Sequences:
>Translated_203_residues MLKKLLMLFVALSLSLAAGLAAAVEVNTADQAALEAVKGLGPVKSKAIIDERTKNGPFKDADDLANRVKGLGTKSVGHLE ENGLTIGGSSTPPKGVKLSKPAATTSATTSATTSAGTASTPTTTTTGTTATAPAASAPEAAAKPAKSKRASKKEKAAAAA AASADAGAGASAPAAASSTKATKGSKKKSKKDKAASAAAASGA >Mature_203_residues MLKKLLMLFVALSLSLAAGLAAAVEVNTADQAALEAVKGLGPVKSKAIIDERTKNGPFKDADDLANRVKGLGTKSVGHLE ENGLTIGGSSTPPKGVKLSKPAATTSATTSATTSAGTASTPTTTTTGTTATAPAASAPEAAAKPAKSKRASKKEKAAAAA AASADAGAGASAPAAASSTKATKGSKKKSKKDKAASAAAASGA
Specific function: Unknown
COG id: COG1555
COG function: function code L; DNA uptake protein and related DNA-binding proteins
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19515; Mature: 19515
Theoretical pI: Translated: 10.86; Mature: 10.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLKKLLMLFVALSLSLAAGLAAAVEVNTADQAALEAVKGLGPVKSKAIIDERTKNGPFKD CHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCC ADDLANRVKGLGTKSVGHLEENGLTIGGSSTPPKGVKLSKPAATTSATTSATTSAGTAST HHHHHHHHHCCCCCCCCCHHCCCEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCC PTTTTTGTTATAPAASAPEAAAKPAKSKRASKKEKAAAAAAASADAGAGASAPAAASSTK CCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCH ATKGSKKKSKKDKAASAAAASGA HHCCCHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MLKKLLMLFVALSLSLAAGLAAAVEVNTADQAALEAVKGLGPVKSKAIIDERTKNGPFKD CHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCC ADDLANRVKGLGTKSVGHLEENGLTIGGSSTPPKGVKLSKPAATTSATTSATTSAGTAST HHHHHHHHHCCCCCCCCCHHCCCEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCC PTTTTTGTTATAPAASAPEAAAKPAKSKRASKKEKAAAAAAASADAGAGASAPAAASSTK CCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCH ATKGSKKKSKKDKAASAAAASGA HHCCCHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA