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The map label for this gene is acoR [H]

Identifier: 115351831

GI number: 115351831

Start: 1967755

End: 1969686

Strand: Direct

Name: acoR [H]

Synonym: Bamb_1780

Alternate gene names: 115351831

Gene position: 1967755-1969686 (Clockwise)

Preceding gene: 115351824

Following gene: 115351834

Centisome position: 55.33

GC content: 72.15

Gene sequence:

>1932_bases
ATGCCCTATGCCGTCCCCCAGGCCCAGCACGCCGACCGTGTGCTCGGCGCGCTCGCCGGGCGCCTGCCCGCACCGGCCGA
TTCCGCGCGTCTCGTGTCGTCGTGGCAGCGCTCGCTCGAGCGCTACGCGCTCGACCCCGCGTCGTCGATCGGCCCGCGCG
TGCTGACCGCGGCCGAGCTGCGCGAGGTGCGCGACAAGGAGGAGGCGTTCCTGCGCGCCTCGGGCCAGTGCCTGACGCGC
CTGCACGAGATGATTCGGGTCGCCGACTATTGCGTGATGCTGACCGACGCGCATGGCGTGACGATCGACTACCGGATCGA
CCGGGAGCGCCGCAACGACTTCCGCCATGCGGGGCTGCACATCGGCTCGTGCTGGTCGGAAAGCGAGGAAGGCACGTGCG
GCGTCGCGAGCGTGCTGACCGATCTCGCGCCGATCACCGTACACAAGACCGACCACTTCCGCGCGGCGTTCACCACGCTC
ACCTGCAGCGCAGCGCCGATCTTCTCGCCGGGCGGCGAACTGATCGGCGTGCTCGACGCGTCGGCCGTCCAGTCGCCCGA
CGGCCGCGACAGCCAGCGCCTCGTGTACCAGCTCGTGCGGCAGAGCGCGGCGCTGATCGAGGACGGCTATTTCGTGCACA
GCACCGCGCAGCACTGGATATTGTTCGGGCATCCGAACCGTCACTACGTCGAGGCACAGCCCGAATGGCTGATCGCGTTC
GACGAATGCGGCAATATCGTCGCCGCGAACCGGCACGCGCGCGACGCGCTGCCGGCGCTGCGCGAACCGCGCCATATCGA
CGAGATCTTCGATGCGACCGAGATGCCGCTGCGCGACGCCGCGCGGCTCGATGCGATCGTCGCGCTGCGGCTGCGCGCGA
CCGGCGCGCCGCTCTATGCGCGACTGCGTGCCCCGTTACGGCGTGCGGGCCGCGAAACCGGCACGGCACGGGCCGCCCCG
GCCTCCCGCCGACCCGGCACCGCGCAGCGCCACGTCGGCGCGCTGACACCGTTCCTGCACAGCAGCGACACGCGCGTCGC
GCAGCAGGCCGAACTCGCGCTGCGGGTCGCAAGCAAGCGGCTGCCGATCCTCGTGCTCGGCGAAACCGGCGCGGGAAAGG
AAGTGTTCGCCCGCGCGATCCACGACGCCGGCGCGCGGCGTGCGCGGCCGTTCGTCGCGGTCAACTGCGGCGCACTGCCC
GAGACACTGATCGAAAGCGAGCTGTTCGGCTACGCGGCCGGTGCGTTCACCGGCGCGCGCAAGCACGGCGCGCGCGGCAA
GATCGCGCTCGCCGACGGCGGCACGCTGTTCCTCGACGAAATCGGCGACATGCCGCTCACGTTGCAAACGCGCCTGCTGC
GCGTGCTCGCCGACGGCGAAGTCGTGCCGCTCGGCAGCGACACACCCGTGCGCGTGGATCTCGACGTGATCTGCGCGACC
CACCGCGATCTCGCGCGGATGGTGGCCGACGGCACGTTCCGCGAGGACCTGTATTACCGGTTGAGCGGCGCGACGTTCGA
GCTGCCGCCGCTGCGCGAGCGCGCGGACGTGGGCGACGTGATCGCCACCGTGTTCGCCGAGGAGGCGCAGGCGACCGGCC
ACGTGCTCACGCTCGACCCGACGCTCGCCGCGCAGCTCGCCGCGTATCCGTGGCCCGGCAACGTGCGCCAGCTGCGCAAC
GTGCTGCGCTATGCGTGCGCGGTATGCGACGCCGCGTGCGTGACGCGGCGCGACCTGCCGGCCGATCTCGCCGCGCAGCT
CGGTGCCGGTCCGGCCGGCGCACTGCCGGACGACGAACGCGGCCGCATCGTCGCGGCACTCACCGCGCATCGCTGGCGGC
CCGATGCGGCCGCGAAGGCGCTCGGCATCTCGCGCGCGACGCTGTACCGGCGAATCGCCAAGCACCGGATCGTCGCGCCG
CACCGCATCTGA

Upstream 100 bases:

>100_bases
ACGTCTCAGGCCGCGCGCGTGCTGCGATGCAATGTGATCCGCCGCCGCGGATGTGCTACAAGAGCATCGAAATCCCCGCC
GTACGGAACCGGAGCCGACC

Downstream 100 bases:

>100_bases
TGCCTGCGACGCATCGGCACGCTTTGCATCACGCCGTGTGCGCGGCCGCTTCGGTTTCGGCGCCGTCCCGGCCGAGCGCT
TCATCACGCCGCGTGAACAC

Product: Fis family GAF modulated sigma54 specific transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 643; Mature: 642

Protein sequence:

>643_residues
MPYAVPQAQHADRVLGALAGRLPAPADSARLVSSWQRSLERYALDPASSIGPRVLTAAELREVRDKEEAFLRASGQCLTR
LHEMIRVADYCVMLTDAHGVTIDYRIDRERRNDFRHAGLHIGSCWSESEEGTCGVASVLTDLAPITVHKTDHFRAAFTTL
TCSAAPIFSPGGELIGVLDASAVQSPDGRDSQRLVYQLVRQSAALIEDGYFVHSTAQHWILFGHPNRHYVEAQPEWLIAF
DECGNIVAANRHARDALPALREPRHIDEIFDATEMPLRDAARLDAIVALRLRATGAPLYARLRAPLRRAGRETGTARAAP
ASRRPGTAQRHVGALTPFLHSSDTRVAQQAELALRVASKRLPILVLGETGAGKEVFARAIHDAGARRARPFVAVNCGALP
ETLIESELFGYAAGAFTGARKHGARGKIALADGGTLFLDEIGDMPLTLQTRLLRVLADGEVVPLGSDTPVRVDLDVICAT
HRDLARMVADGTFREDLYYRLSGATFELPPLRERADVGDVIATVFAEEAQATGHVLTLDPTLAAQLAAYPWPGNVRQLRN
VLRYACAVCDAACVTRRDLPADLAAQLGAGPAGALPDDERGRIVAALTAHRWRPDAAAKALGISRATLYRRIAKHRIVAP
HRI

Sequences:

>Translated_643_residues
MPYAVPQAQHADRVLGALAGRLPAPADSARLVSSWQRSLERYALDPASSIGPRVLTAAELREVRDKEEAFLRASGQCLTR
LHEMIRVADYCVMLTDAHGVTIDYRIDRERRNDFRHAGLHIGSCWSESEEGTCGVASVLTDLAPITVHKTDHFRAAFTTL
TCSAAPIFSPGGELIGVLDASAVQSPDGRDSQRLVYQLVRQSAALIEDGYFVHSTAQHWILFGHPNRHYVEAQPEWLIAF
DECGNIVAANRHARDALPALREPRHIDEIFDATEMPLRDAARLDAIVALRLRATGAPLYARLRAPLRRAGRETGTARAAP
ASRRPGTAQRHVGALTPFLHSSDTRVAQQAELALRVASKRLPILVLGETGAGKEVFARAIHDAGARRARPFVAVNCGALP
ETLIESELFGYAAGAFTGARKHGARGKIALADGGTLFLDEIGDMPLTLQTRLLRVLADGEVVPLGSDTPVRVDLDVICAT
HRDLARMVADGTFREDLYYRLSGATFELPPLRERADVGDVIATVFAEEAQATGHVLTLDPTLAAQLAAYPWPGNVRQLRN
VLRYACAVCDAACVTRRDLPADLAAQLGAGPAGALPDDERGRIVAALTAHRWRPDAAAKALGISRATLYRRIAKHRIVAP
HRI
>Mature_642_residues
PYAVPQAQHADRVLGALAGRLPAPADSARLVSSWQRSLERYALDPASSIGPRVLTAAELREVRDKEEAFLRASGQCLTRL
HEMIRVADYCVMLTDAHGVTIDYRIDRERRNDFRHAGLHIGSCWSESEEGTCGVASVLTDLAPITVHKTDHFRAAFTTLT
CSAAPIFSPGGELIGVLDASAVQSPDGRDSQRLVYQLVRQSAALIEDGYFVHSTAQHWILFGHPNRHYVEAQPEWLIAFD
ECGNIVAANRHARDALPALREPRHIDEIFDATEMPLRDAARLDAIVALRLRATGAPLYARLRAPLRRAGRETGTARAAPA
SRRPGTAQRHVGALTPFLHSSDTRVAQQAELALRVASKRLPILVLGETGAGKEVFARAIHDAGARRARPFVAVNCGALPE
TLIESELFGYAAGAFTGARKHGARGKIALADGGTLFLDEIGDMPLTLQTRLLRVLADGEVVPLGSDTPVRVDLDVICATH
RDLARMVADGTFREDLYYRLSGATFELPPLRERADVGDVIATVFAEEAQATGHVLTLDPTLAAQLAAYPWPGNVRQLRNV
LRYACAVCDAACVTRRDLPADLAAQLGAGPAGALPDDERGRIVAALTAHRWRPDAAAKALGISRATLYRRIAKHRIVAPH
RI

Specific function: Required for sigma-54-dependent transcription of acoXABC [H]

COG id: COG3284

COG function: function code QK; Transcriptional activator of acetoin/glycerol metabolism

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

Organism=Escherichia coli, GI1789233, Length=317, Percent_Identity=41.9558359621451, Blast_Score=234, Evalue=2e-62,
Organism=Escherichia coli, GI1788550, Length=297, Percent_Identity=39.0572390572391, Blast_Score=209, Evalue=5e-55,
Organism=Escherichia coli, GI1788905, Length=305, Percent_Identity=40.655737704918, Blast_Score=208, Evalue=1e-54,
Organism=Escherichia coli, GI87082117, Length=299, Percent_Identity=42.809364548495, Blast_Score=205, Evalue=7e-54,
Organism=Escherichia coli, GI1790437, Length=291, Percent_Identity=41.5807560137457, Blast_Score=200, Evalue=2e-52,
Organism=Escherichia coli, GI1790299, Length=311, Percent_Identity=39.5498392282958, Blast_Score=200, Evalue=2e-52,
Organism=Escherichia coli, GI1786524, Length=295, Percent_Identity=44.0677966101695, Blast_Score=196, Evalue=3e-51,
Organism=Escherichia coli, GI1789087, Length=298, Percent_Identity=41.6107382550336, Blast_Score=196, Evalue=5e-51,
Organism=Escherichia coli, GI87082152, Length=295, Percent_Identity=41.3559322033898, Blast_Score=183, Evalue=3e-47,
Organism=Escherichia coli, GI87081872, Length=298, Percent_Identity=37.248322147651, Blast_Score=175, Evalue=9e-45,
Organism=Escherichia coli, GI1787583, Length=304, Percent_Identity=36.1842105263158, Blast_Score=173, Evalue=3e-44,
Organism=Escherichia coli, GI87081858, Length=563, Percent_Identity=24.866785079929, Blast_Score=139, Evalue=7e-34,
Organism=Escherichia coli, GI1789828, Length=251, Percent_Identity=37.0517928286853, Blast_Score=129, Evalue=5e-31,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR020441
- InterPro:   IPR009057
- InterPro:   IPR002197
- InterPro:   IPR002078 [H]

Pfam domain/function: PF02954 HTH_8; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 69822; Mature: 69691

Theoretical pI: Translated: 8.10; Mature: 8.10

Prosite motif: PS00675 SIGMA54_INTERACT_1 ; PS00676 SIGMA54_INTERACT_2 ; PS00688 SIGMA54_INTERACT_3 ; PS50045 SIGMA54_INTERACT_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPYAVPQAQHADRVLGALAGRLPAPADSARLVSSWQRSLERYALDPASSIGPRVLTAAEL
CCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHCCCHHHHHHHH
REVRDKEEAFLRASGQCLTRLHEMIRVADYCVMLTDAHGVTIDYRIDRERRNDFRHAGLH
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHEEEECCCCEEEEEEECHHHHHHHHHHCCE
IGSCWSESEEGTCGVASVLTDLAPITVHKTDHFRAAFTTLTCSAAPIFSPGGELIGVLDA
EECCCCCCCCCCCHHHHHHHHCCCEEEECCCCHHEEHHEEEECCCCCCCCCCCEEEEEEH
SAVQSPDGRDSQRLVYQLVRQSAALIEDGYFVHSTAQHWILFGHPNRHYVEAQPEWLIAF
HHCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEECCCEEEEEECCCCCEEECCCCEEEEE
DECGNIVAANRHARDALPALREPRHIDEIFDATEMPLRDAARLDAIVALRLRATGAPLYA
CCCCCEEECCCCHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHHHEEEEECCCCHHHH
RLRAPLRRAGRETGTARAAPASRRPGTAQRHVGALTPFLHSSDTRVAQQAELALRVASKR
HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
LPILVLGETGAGKEVFARAIHDAGARRARPFVAVNCGALPETLIESELFGYAAGAFTGAR
CCEEEEECCCCCHHHHHHHHHHCCHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCHH
KHGARGKIALADGGTLFLDEIGDMPLTLQTRLLRVLADGEVVPLGSDTPVRVDLDVICAT
HCCCCCEEEEECCCEEEEHHHCCCCCHHHHHHHHHHCCCCEEECCCCCCEEEEHHEEEHH
HRDLARMVADGTFREDLYYRLSGATFELPPLRERADVGDVIATVFAEEAQATGHVLTLDP
HHHHHHHHHCCCHHHHHHEEECCCEECCCCCHHHCCHHHHHHHHHHHHHHCCCCEEEECH
TLAAQLAAYPWPGNVRQLRNVLRYACAVCDAACVTRRDLPADLAAQLGAGPAGALPDDER
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCC
GRIVAALTAHRWRPDAAAKALGISRATLYRRIAKHRIVAPHRI
CCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
PYAVPQAQHADRVLGALAGRLPAPADSARLVSSWQRSLERYALDPASSIGPRVLTAAEL
CCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHCCCHHHHHHHH
REVRDKEEAFLRASGQCLTRLHEMIRVADYCVMLTDAHGVTIDYRIDRERRNDFRHAGLH
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHEEEECCCCEEEEEEECHHHHHHHHHHCCE
IGSCWSESEEGTCGVASVLTDLAPITVHKTDHFRAAFTTLTCSAAPIFSPGGELIGVLDA
EECCCCCCCCCCCHHHHHHHHCCCEEEECCCCHHEEHHEEEECCCCCCCCCCCEEEEEEH
SAVQSPDGRDSQRLVYQLVRQSAALIEDGYFVHSTAQHWILFGHPNRHYVEAQPEWLIAF
HHCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEECCCEEEEEECCCCCEEECCCCEEEEE
DECGNIVAANRHARDALPALREPRHIDEIFDATEMPLRDAARLDAIVALRLRATGAPLYA
CCCCCEEECCCCHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHHHEEEEECCCCHHHH
RLRAPLRRAGRETGTARAAPASRRPGTAQRHVGALTPFLHSSDTRVAQQAELALRVASKR
HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
LPILVLGETGAGKEVFARAIHDAGARRARPFVAVNCGALPETLIESELFGYAAGAFTGAR
CCEEEEECCCCCHHHHHHHHHHCCHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCHH
KHGARGKIALADGGTLFLDEIGDMPLTLQTRLLRVLADGEVVPLGSDTPVRVDLDVICAT
HCCCCCEEEEECCCEEEEHHHCCCCCHHHHHHHHHHCCCCEEECCCCCCEEEEHHEEEHH
HRDLARMVADGTFREDLYYRLSGATFELPPLRERADVGDVIATVFAEEAQATGHVLTLDP
HHHHHHHHHCCCHHHHHHEEECCCEECCCCCHHHCCHHHHHHHHHHHHHHCCCCEEEECH
TLAAQLAAYPWPGNVRQLRNVLRYACAVCDAACVTRRDLPADLAAQLGAGPAGALPDDER
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCC
GRIVAALTAHRWRPDAAAKALGISRATLYRRIAKHRIVAPHRI
CCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1378052 [H]