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The map label for this gene is yhcD [H]

Identifier: 115351731

GI number: 115351731

Start: 1855003

End: 1857546

Strand: Direct

Name: yhcD [H]

Synonym: Bamb_1679

Alternate gene names: 115351731

Gene position: 1855003-1857546 (Clockwise)

Preceding gene: 115351730

Following gene: 115351735

Centisome position: 52.16

GC content: 71.42

Gene sequence:

>2544_bases
ATGTCAGGTGCCATTCGTGGCCCGCGCGGCCTCTTCGCGCTCGGGCTGTCCGCCGTCGCGAGCTGCATGCCGTGCGCCGC
CGCCACCAACCCGGGCAACACCGCACCCGACACGGTCGAGTTCGACACCGGCGCGCTGCGCGAGCACGGGATCGACGCCA
CGGCGAGCCGCTATTTCGCGCACGCGCCGCGCTTCATGCCCGGCACGGCTTCCGTGCGGTTGACGGTCAACGGCAAGCGC
GCCGGCCGCGCCGATGCGCGATTCGACGACAACGGCAACCTGTGCGCGACGCCCGGCCTGCTGCGCGCGGCCGGCCTCGT
CGTGCCCGACGCGCTCCGGGATGCGACTGCGGCGACCGCACGGAGCGCCGGCGCCGACACGCCGCCATGCTACGACTACC
GGCGCGCCTATCCGCAGACGATCGTCACGCTGCGCCCGGCCGACGGCGCCGTCGACCTGGTCGTGCCGCCCGACGCACTC
GACACGGGCCGGCGCACGCCCGACATGTTCGAGCACGGCGGCTTCGCCGGGCTCGTCAACTACGACCTGCTCGCGATGAC
GACGCGCAATCCGGCCGGCACGTCGCAATACTGGCAAGCCACGACCGAAGCCGGCTTCAACGCGGCGGACTGGATCGTGC
GCAGCAGCCAGATCGCCACGGTCGTGGATGGCCATGCCGGCATCGATCATCAGGCAGCCTACGCCCAGCGCACGTTCGCC
TCGCGCGGCGCGACGCTGCAGGCCGGGCAGATCGTCCCGCGCTCGACGCTGTTCGCGATCGGCCGGACGTTCGGTGTGCA
GATGTTTCCGGACGAAGCACTCGCCGTCACGCCCGGCGCGGCCGCACGCGTGACCGGGATCGCACGCACGCAGGCGCGCG
TCGAGGTACGCCAGCTCGGCGTACTGATCCATGCGTCGCAGTTGCCGCCGGGGCCGTTCACGCTGACCGACCTGCCGCTC
GTCAGCGGCAGCGCGGATCTCGACGTGACCGTCGTCGAGGCCACCGGCGACGTGCAGCATTTCATCGTGCCGGGTTCTTC
GCTGCCCGGGGCCGGGCTCGCCGCCGCGCAAGGGCTGGCGATCGCGGTGGGCCGCCTGCAGAACGACGGCTACGCACAAG
CGCCGTGGCTCGCGACCGCCACGCGCGGCTGGCAGATCCGGCAACGCGCGCGGCTCAACGCCGGCATCCTCGTGTCATCG
CCGTTGCAGTCGGGCGCCGCGAGCGTCGAATTCGCACCGCTTGCCGGCGTCGCCGCGGCCGTCGGCGTCGATCTCACCCG
CGCCGCCGGCCGCAACGGCGCGCAGACGCGTATCGCGCTGTCGAGCAACGGCGACACGCCATTGCGCGCCAATGTGTCGT
TCGTCCGGCGCACGTCCGGATACCGTGAACTGACCGATGCGGTGCGGTCGACCGACGCATTCACGCCGCCGGCGCGCACC
CAGTTCGCGGCGGCGCTCGGCTGGCACGATCGCACGCTCGGCATGCTGTCGTTCGACTACACGCGCGTCGCGGTATTCGA
CGGCCCCGCGATGCAGCGCATCGCCGGCGCATGGACTCGCCCGCTCGGGCGGGGCTCGCTCGCATTGAACGTGAGCCGGA
CGTTCGGCACCCGCGGCGCCATCGGCACCCAGGTTTATCTGAGCGCGACCGTGCCGATCGGCACGCGCAGCGTCAGCGCG
TTTGCGAACGTCACCGGCGACTCGGTGCGTTCGGGCGCCCGCTATTCCGACACGTTCGGCCGGACCGGCAGTTACAGCGT
CGCGGCCGACTACGACACCGCGATCCGGTCGCCGTCGATCCGCGCGACGGTCAGCGCCACGCCGAAGCATGTGCGCGCGA
TCGTCAACGCGGGCCTCTACGGCGCCGATCGCGCGACGCTCGGTGTCAATCTGCGCGGTGCGGTCGCGCTGCTCGATGGT
GTAGGCATGCTGTCGCCGTACGAGATCCGCGACACGCTCGCACTCGCCCGCGTCGGCGATCGCGCCGGCATCGAACTCGT
CACGCCGTCGGGCCCGGTCTGGACCGATCGCCACGGCCGCGCCGTCATCGCATCGCTGCCCGCGTACACGCAAACGCTCG
TGCGGATCAACACGAAAAGCCTGCCGCGCAATCTCGACCTGAAGAACGGCATACAGACCGTCGAAGCCGGCCGCGGCTCG
GTCAGCCGCGTCGAATTCGCCGTCGAGCAGACGCGACGCGTGCTGCTGACCGTGACGCTCTCGAACGGCGCGCCGCTGCC
GGTGCTGTCGACCGTCGTCGACGACGACGACCGGTTCGTGACCGTCAGCGGAAGCGAAGGCAGGTTGCTGCTCACGGGCG
CGCAACTGACGACGCCGCTGCGGGTCGCGTTGCCGGACGGCGCGTACTGTCGCCTGGCGATCGCGCTGCCGGCCACGCCG
CCCGCGACGACGCGCTATTACGAGCGGGCCGACGCGCGCTGCGAGTCGGTGCCCGCGTCCGTCGCGCAAGCCGCACAAAA
AAAGAGCGGCATGCCGACTGACATGCCGCCAACCCCAACTCTGTTCTTGTCCGAACGCGCCTAG

Upstream 100 bases:

>100_bases
TACGGCTACTCGGTCGATCACTACGACGCAGCGCTTGCCCCTGCTGCGGCCGCTGCGGCCACGCAACGGTAAGCACCGCG
TCTTCGATTCCGGATCTGCG

Downstream 100 bases:

>100_bases
AACTTCATCCCCACGCCCACGCCGACGATCAGCGGATCGATGTGCAGCGTGCCGATGCCCTTGTCGCCGAGCGTCGCGTC
GGTGCTCATCCAGATCTTCT

Product: fimbrial biogenesis outer membrane usher protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 847; Mature: 846

Protein sequence:

>847_residues
MSGAIRGPRGLFALGLSAVASCMPCAAATNPGNTAPDTVEFDTGALREHGIDATASRYFAHAPRFMPGTASVRLTVNGKR
AGRADARFDDNGNLCATPGLLRAAGLVVPDALRDATAATARSAGADTPPCYDYRRAYPQTIVTLRPADGAVDLVVPPDAL
DTGRRTPDMFEHGGFAGLVNYDLLAMTTRNPAGTSQYWQATTEAGFNAADWIVRSSQIATVVDGHAGIDHQAAYAQRTFA
SRGATLQAGQIVPRSTLFAIGRTFGVQMFPDEALAVTPGAAARVTGIARTQARVEVRQLGVLIHASQLPPGPFTLTDLPL
VSGSADLDVTVVEATGDVQHFIVPGSSLPGAGLAAAQGLAIAVGRLQNDGYAQAPWLATATRGWQIRQRARLNAGILVSS
PLQSGAASVEFAPLAGVAAAVGVDLTRAAGRNGAQTRIALSSNGDTPLRANVSFVRRTSGYRELTDAVRSTDAFTPPART
QFAAALGWHDRTLGMLSFDYTRVAVFDGPAMQRIAGAWTRPLGRGSLALNVSRTFGTRGAIGTQVYLSATVPIGTRSVSA
FANVTGDSVRSGARYSDTFGRTGSYSVAADYDTAIRSPSIRATVSATPKHVRAIVNAGLYGADRATLGVNLRGAVALLDG
VGMLSPYEIRDTLALARVGDRAGIELVTPSGPVWTDRHGRAVIASLPAYTQTLVRINTKSLPRNLDLKNGIQTVEAGRGS
VSRVEFAVEQTRRVLLTVTLSNGAPLPVLSTVVDDDDRFVTVSGSEGRLLLTGAQLTTPLRVALPDGAYCRLAIALPATP
PATTRYYERADARCESVPASVAQAAQKKSGMPTDMPPTPTLFLSERA

Sequences:

>Translated_847_residues
MSGAIRGPRGLFALGLSAVASCMPCAAATNPGNTAPDTVEFDTGALREHGIDATASRYFAHAPRFMPGTASVRLTVNGKR
AGRADARFDDNGNLCATPGLLRAAGLVVPDALRDATAATARSAGADTPPCYDYRRAYPQTIVTLRPADGAVDLVVPPDAL
DTGRRTPDMFEHGGFAGLVNYDLLAMTTRNPAGTSQYWQATTEAGFNAADWIVRSSQIATVVDGHAGIDHQAAYAQRTFA
SRGATLQAGQIVPRSTLFAIGRTFGVQMFPDEALAVTPGAAARVTGIARTQARVEVRQLGVLIHASQLPPGPFTLTDLPL
VSGSADLDVTVVEATGDVQHFIVPGSSLPGAGLAAAQGLAIAVGRLQNDGYAQAPWLATATRGWQIRQRARLNAGILVSS
PLQSGAASVEFAPLAGVAAAVGVDLTRAAGRNGAQTRIALSSNGDTPLRANVSFVRRTSGYRELTDAVRSTDAFTPPART
QFAAALGWHDRTLGMLSFDYTRVAVFDGPAMQRIAGAWTRPLGRGSLALNVSRTFGTRGAIGTQVYLSATVPIGTRSVSA
FANVTGDSVRSGARYSDTFGRTGSYSVAADYDTAIRSPSIRATVSATPKHVRAIVNAGLYGADRATLGVNLRGAVALLDG
VGMLSPYEIRDTLALARVGDRAGIELVTPSGPVWTDRHGRAVIASLPAYTQTLVRINTKSLPRNLDLKNGIQTVEAGRGS
VSRVEFAVEQTRRVLLTVTLSNGAPLPVLSTVVDDDDRFVTVSGSEGRLLLTGAQLTTPLRVALPDGAYCRLAIALPATP
PATTRYYERADARCESVPASVAQAAQKKSGMPTDMPPTPTLFLSERA
>Mature_846_residues
SGAIRGPRGLFALGLSAVASCMPCAAATNPGNTAPDTVEFDTGALREHGIDATASRYFAHAPRFMPGTASVRLTVNGKRA
GRADARFDDNGNLCATPGLLRAAGLVVPDALRDATAATARSAGADTPPCYDYRRAYPQTIVTLRPADGAVDLVVPPDALD
TGRRTPDMFEHGGFAGLVNYDLLAMTTRNPAGTSQYWQATTEAGFNAADWIVRSSQIATVVDGHAGIDHQAAYAQRTFAS
RGATLQAGQIVPRSTLFAIGRTFGVQMFPDEALAVTPGAAARVTGIARTQARVEVRQLGVLIHASQLPPGPFTLTDLPLV
SGSADLDVTVVEATGDVQHFIVPGSSLPGAGLAAAQGLAIAVGRLQNDGYAQAPWLATATRGWQIRQRARLNAGILVSSP
LQSGAASVEFAPLAGVAAAVGVDLTRAAGRNGAQTRIALSSNGDTPLRANVSFVRRTSGYRELTDAVRSTDAFTPPARTQ
FAAALGWHDRTLGMLSFDYTRVAVFDGPAMQRIAGAWTRPLGRGSLALNVSRTFGTRGAIGTQVYLSATVPIGTRSVSAF
ANVTGDSVRSGARYSDTFGRTGSYSVAADYDTAIRSPSIRATVSATPKHVRAIVNAGLYGADRATLGVNLRGAVALLDGV
GMLSPYEIRDTLALARVGDRAGIELVTPSGPVWTDRHGRAVIASLPAYTQTLVRINTKSLPRNLDLKNGIQTVEAGRGSV
SRVEFAVEQTRRVLLTVTLSNGAPLPVLSTVVDDDDRFVTVSGSEGRLLLTGAQLTTPLRVALPDGAYCRLAIALPATPP
ATTRYYERADARCESVPASVAQAAQKKSGMPTDMPPTPTLFLSERA

Specific function: Involved in the export and assembly of a fimbrial subunit across the outer membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial export usher family [H]

Homologues:

Organism=Escherichia coli, GI1789610, Length=786, Percent_Identity=30.4071246819338, Blast_Score=405, Evalue=1e-114,
Organism=Escherichia coli, GI1789533, Length=860, Percent_Identity=23.6046511627907, Blast_Score=123, Evalue=4e-29,
Organism=Escherichia coli, GI1786332, Length=819, Percent_Identity=21.3675213675214, Blast_Score=100, Evalue=3e-22,
Organism=Escherichia coli, GI1788427, Length=322, Percent_Identity=26.3975155279503, Blast_Score=99, Evalue=1e-21,
Organism=Escherichia coli, GI1790772, Length=192, Percent_Identity=30.7291666666667, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI87081778, Length=350, Percent_Identity=26.2857142857143, Blast_Score=80, Evalue=4e-16,
Organism=Escherichia coli, GI1786744, Length=328, Percent_Identity=25.609756097561, Blast_Score=80, Evalue=6e-16,
Organism=Escherichia coli, GI1787172, Length=341, Percent_Identity=24.633431085044, Blast_Score=67, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000015
- InterPro:   IPR018030 [H]

Pfam domain/function: PF00577 Usher [H]

EC number: NA

Molecular weight: Translated: 88623; Mature: 88492

Theoretical pI: Translated: 9.88; Mature: 9.88

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS01151 FIMBRIAL_USHER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGAIRGPRGLFALGLSAVASCMPCAAATNPGNTAPDTVEFDTGALREHGIDATASRYFA
CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCHHHHCCCCHHHHHHHH
HAPRFMPGTASVRLTVNGKRAGRADARFDDNGNLCATPGLLRAAGLVVPDALRDATAATA
CCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCEEECCHHHHHHCCCCCHHHHHHHHHHH
RSAGADTPPCYDYRRAYPQTIVTLRPADGAVDLVVPPDALDTGRRTPDMFEHGGFAGLVN
HCCCCCCCCCCHHHHCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCHHHCCCEEEEEC
YDLLAMTTRNPAGTSQYWQATTEAGFNAADWIVRSSQIATVVDGHAGIDHQAAYAQRTFA
CEEEEEEECCCCCCHHHHHHHHHCCCCHHHHEEECCCEEEEECCCCCCCCHHHHHHHHHH
SRGATLQAGQIVPRSTLFAIGRTFGVQMFPDEALAVTPGAAARVTGIARTQARVEVRQLG
HCCCEEECCCCCCCHHHHHHHHHHCEEECCCCCEEECCCCHHHEEHHHHHHHHHHHHHHE
VLIHASQLPPGPFTLTDLPLVSGSADLDVTVVEATGDVQHFIVPGSSLPGAGLAAAQGLA
EEEEECCCCCCCEEEECCCEECCCCCCEEEEEEECCCEEEEEECCCCCCCCCHHHHCCEE
IAVGRLQNDGYAQAPWLATATRGWQIRQRARLNAGILVSSPLQSGAASVEFAPLAGVAAA
EEEEEECCCCCCCCCEEEECCCCHHHHHHHHCCCCEEEECCCCCCCCCEEECCHHHHHHH
VGVDLTRAAGRNGAQTRIALSSNGDTPLRANVSFVRRTSGYRELTDAVRSTDAFTPPART
HCCHHHHHCCCCCCEEEEEEECCCCCCEECCHHHEECCCCHHHHHHHHHHCCCCCCCCHH
QFAAALGWHDRTLGMLSFDYTRVAVFDGPAMQRIAGAWTRPLGRGSLALNVSRTFGTRGA
HHHHHHCCCCCEEEEEEECCEEEEEECCHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCC
IGTQVYLSATVPIGTRSVSAFANVTGDSVRSGARYSDTFGRTGSYSVAADYDTAIRSPSI
CCEEEEEEEECCCCCCCHHHHHCCCCHHHHCCCCCCCCCCCCCCEEEEECCHHHHCCCCE
RATVSATPKHVRAIVNAGLYGADRATLGVNLRGAVALLDGVGMLSPYEIRDTLALARVGD
EEEECCCHHHHHHHHHCCCCCCCCEEEEECCCHHEEEECCCCCCCCHHHHHHHHHHHCCC
RAGIELVTPSGPVWTDRHGRAVIASLPAYTQTLVRINTKSLPRNLDLKNGIQTVEAGRGS
CCCEEEECCCCCEEECCCCCEEEEECCHHHEEEEEEECCCCCCCCCHHHCCHHHHCCCCC
VSRVEFAVEQTRRVLLTVTLSNGAPLPVLSTVVDDDDRFVTVSGSEGRLLLTGAQLTTPL
HHHHHHHHHCCCEEEEEEEECCCCCCCEEHHEECCCCCEEEEECCCCEEEEECCCCCCCE
RVALPDGAYCRLAIALPATPPATTRYYERADARCESVPASVAQAAQKKSGMPTDMPPTPT
EEECCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCE
LFLSERA
EEEECCC
>Mature Secondary Structure 
SGAIRGPRGLFALGLSAVASCMPCAAATNPGNTAPDTVEFDTGALREHGIDATASRYFA
CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCHHHHCCCCHHHHHHHH
HAPRFMPGTASVRLTVNGKRAGRADARFDDNGNLCATPGLLRAAGLVVPDALRDATAATA
CCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCEEECCHHHHHHCCCCCHHHHHHHHHHH
RSAGADTPPCYDYRRAYPQTIVTLRPADGAVDLVVPPDALDTGRRTPDMFEHGGFAGLVN
HCCCCCCCCCCHHHHCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCHHHCCCEEEEEC
YDLLAMTTRNPAGTSQYWQATTEAGFNAADWIVRSSQIATVVDGHAGIDHQAAYAQRTFA
CEEEEEEECCCCCCHHHHHHHHHCCCCHHHHEEECCCEEEEECCCCCCCCHHHHHHHHHH
SRGATLQAGQIVPRSTLFAIGRTFGVQMFPDEALAVTPGAAARVTGIARTQARVEVRQLG
HCCCEEECCCCCCCHHHHHHHHHHCEEECCCCCEEECCCCHHHEEHHHHHHHHHHHHHHE
VLIHASQLPPGPFTLTDLPLVSGSADLDVTVVEATGDVQHFIVPGSSLPGAGLAAAQGLA
EEEEECCCCCCCEEEECCCEECCCCCCEEEEEEECCCEEEEEECCCCCCCCCHHHHCCEE
IAVGRLQNDGYAQAPWLATATRGWQIRQRARLNAGILVSSPLQSGAASVEFAPLAGVAAA
EEEEEECCCCCCCCCEEEECCCCHHHHHHHHCCCCEEEECCCCCCCCCEEECCHHHHHHH
VGVDLTRAAGRNGAQTRIALSSNGDTPLRANVSFVRRTSGYRELTDAVRSTDAFTPPART
HCCHHHHHCCCCCCEEEEEEECCCCCCEECCHHHEECCCCHHHHHHHHHHCCCCCCCCHH
QFAAALGWHDRTLGMLSFDYTRVAVFDGPAMQRIAGAWTRPLGRGSLALNVSRTFGTRGA
HHHHHHCCCCCEEEEEEECCEEEEEECCHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCC
IGTQVYLSATVPIGTRSVSAFANVTGDSVRSGARYSDTFGRTGSYSVAADYDTAIRSPSI
CCEEEEEEEECCCCCCCHHHHHCCCCHHHHCCCCCCCCCCCCCCEEEEECCHHHHCCCCE
RATVSATPKHVRAIVNAGLYGADRATLGVNLRGAVALLDGVGMLSPYEIRDTLALARVGD
EEEECCCHHHHHHHHHCCCCCCCCEEEEECCCHHEEEECCCCCCCCHHHHHHHHHHHCCC
RAGIELVTPSGPVWTDRHGRAVIASLPAYTQTLVRINTKSLPRNLDLKNGIQTVEAGRGS
CCCEEEECCCCCEEECCCCCEEEEECCHHHEEEEEEECCCCCCCCCHHHCCHHHHCCCCC
VSRVEFAVEQTRRVLLTVTLSNGAPLPVLSTVVDDDDRFVTVSGSEGRLLLTGAQLTTPL
HHHHHHHHHCCCEEEEEEEECCCCCCCEEHHEECCCCCEEEEECCCCEEEEECCCCCCCE
RVALPDGAYCRLAIALPATPPATTRYYERADARCESVPASVAQAAQKKSGMPTDMPPTPT
EEECCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCE
LFLSERA
EEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]