Definition Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence.
Accession NC_008390
Length 3,556,545

Click here to switch to the map view.

The map label for this gene is 115351735

Identifier: 115351735

GI number: 115351735

Start: 1861273

End: 1861638

Strand: Direct

Name: 115351735

Synonym: Bamb_1683

Alternate gene names: NA

Gene position: 1861273-1861638 (Clockwise)

Preceding gene: 115351731

Following gene: 115351745

Centisome position: 52.33

GC content: 66.12

Gene sequence:

>366_bases
ATGTCCGACGCATCCCACACTCTCGGCTCGCAAGACCGCCTGGAACTGCTTTGCTGGCTCACCTGCGGCAATCTCGGCGC
GTTTTACCTCAACGAATCGTGGCCGGACGCCACGTTCCAGGTCCAGGCCGCGCACCGCTGGCTCGACCGCCATCACCGTC
AGGCCGACTGGCTCGCGGTCGCCCGGCTCGCGGCGCTCGCGCAGGACATCGCGAAGCGGCATGCGGGGTTCGTCGACGCG
TCGTGGGCGCGCGACGCAGTGGAGGAAATCGTCGATACCGACGATCTCGACTATCGGGCGAAACTCGTGCAATGGGTGTA
CGAAGACTGCTGCAAGGCGCTCGCGGACAAGCGGCTGGCCGATTGA

Upstream 100 bases:

>100_bases
GGGTGCGCGGGCAGGCTCGCATCGTGCTATGTTTTTATTATCGGCATCGGCCCGTTGCGGCCGGCGCCGCCCGGAATCGA
CGCATTTCGTGAGCGCTGCC

Downstream 100 bases:

>100_bases
GCCGCATCTGGAGCCGCATGCGTGCAGGCGGCTCACTCGCTATGCGCATAGGTTTTATCGTCGATGCGGACGCAGCAGCC
GGAATCGCTGGCGCGGTATG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 121; Mature: 120

Protein sequence:

>121_residues
MSDASHTLGSQDRLELLCWLTCGNLGAFYLNESWPDATFQVQAAHRWLDRHHRQADWLAVARLAALAQDIAKRHAGFVDA
SWARDAVEEIVDTDDLDYRAKLVQWVYEDCCKALADKRLAD

Sequences:

>Translated_121_residues
MSDASHTLGSQDRLELLCWLTCGNLGAFYLNESWPDATFQVQAAHRWLDRHHRQADWLAVARLAALAQDIAKRHAGFVDA
SWARDAVEEIVDTDDLDYRAKLVQWVYEDCCKALADKRLAD
>Mature_120_residues
SDASHTLGSQDRLELLCWLTCGNLGAFYLNESWPDATFQVQAAHRWLDRHHRQADWLAVARLAALAQDIAKRHAGFVDAS
WARDAVEEIVDTDDLDYRAKLVQWVYEDCCKALADKRLAD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 13787; Mature: 13656

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.3 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
3.3 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDASHTLGSQDRLELLCWLTCGNLGAFYLNESWPDATFQVQAAHRWLDRHHRQADWLAV
CCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCHHHHHHH
ARLAALAQDIAKRHAGFVDASWARDAVEEIVDTDDLDYRAKLVQWVYEDCCKALADKRLA
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
D
C
>Mature Secondary Structure 
SDASHTLGSQDRLELLCWLTCGNLGAFYLNESWPDATFQVQAAHRWLDRHHRQADWLAV
CCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCHHHHHHH
ARLAALAQDIAKRHAGFVDASWARDAVEEIVDTDDLDYRAKLVQWVYEDCCKALADKRLA
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
D
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA