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The map label for this gene is yafC [H]

Identifier: 115351667

GI number: 115351667

Start: 1788356

End: 1789288

Strand: Direct

Name: yafC [H]

Synonym: Bamb_1614

Alternate gene names: 115351667

Gene position: 1788356-1789288 (Clockwise)

Preceding gene: 115351661

Following gene: 115351671

Centisome position: 50.28

GC content: 67.85

Gene sequence:

>933_bases
ATGCAACGAAAATTCGACGACCTCCTGCTCGGCAGCATCGAGCTGTTCTGCCTGGCAGCCGAACTCGGCAGCTTCACGCT
CGCCGCGACGGCCGCGAGCGTCACGCCGGCCGCCGTCAGCCGGTCGGTCGCGCGGCTCGAGGAGCGTCTCGGCGTACGCC
TGTTCGTCCGGACCACGCGGCAAATCCGCCTGACCGATTCCGGACGGCGCTACTTCGAGCAATGCCGTGATGCGCTGTCT
CAGCTCGTCGACGCGGAGCGCGAGGCAACGGGCCAGCAGGCAACGCCGGCGGGGGTGCTGCGCATCAGCATGCCGACGCC
GTACGGACACTATCGGGTGCTGCCGCTGCTGCCCGCGTTTCGCGAGCGCTACCCGGACGTATGCGTCGAAACGCATCTGA
GCAACCGCAACATCGACTTCGCCGAGGAAGGTTTCGACCTTGCGATCCGCGGCCGTGCGCCGGCGGATTCGAGCCTGGTC
GCGCGCAAGCTGGAGGACGCTGAACTCGTCGTCGTCGCGACGCCCGGCTACCTGAAGCGCGCCGGCGTGCCGCGCGCCGT
CGACGATCTGCACGCGCACGAATGCATCCAGTTCGAGCTCCCGAGCAGCGGGCGGCCGATTCCGTGGCTGTTCAACGACG
GCGCGGCAGAAATTGAAATCGCGACGACCGGCGGCTACGGCACGTCGGGCGACGTCCTCGCAGGCGTCACGCTCGCGCGC
AGCGGTGCAGGCCTGTTCCAGACCTACCGCTTCATCGTCGAACGGGATCTGCGGGAGGGCACGCTCGCGGAGGTGCTGTC
CGGTCAGGGCGGGCGGTCGCGGCCGTTCATGCTGCTGTATCCACATGCACGCTATCTGTCGTCACGCGTGCGCGTCTTCG
TCGACTTTCTCGTCGAACATCTCGAGCAGGCGCCCGACAAGCGCAAGCGCTAG

Upstream 100 bases:

>100_bases
GCCGCATTCGCCGGTTCGCTGGTTTGCCGCCGGGGATTCATGCACACTCGTTGCTTCGACATCCCGCGACACAAGCACCG
GACACCGCTGGAGCCGCTTC

Downstream 100 bases:

>100_bases
CCGCGTGCGGCCGGTGCGCGGACGGCGCGGCTGAGCCGGTAGCGGGCCGGCGCGCGCCATCCGCGCCGGCCTTTCTCACT
ACTTTGCCCGCTCAGTGCCC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
MQRKFDDLLLGSIELFCLAAELGSFTLAATAASVTPAAVSRSVARLEERLGVRLFVRTTRQIRLTDSGRRYFEQCRDALS
QLVDAEREATGQQATPAGVLRISMPTPYGHYRVLPLLPAFRERYPDVCVETHLSNRNIDFAEEGFDLAIRGRAPADSSLV
ARKLEDAELVVVATPGYLKRAGVPRAVDDLHAHECIQFELPSSGRPIPWLFNDGAAEIEIATTGGYGTSGDVLAGVTLAR
SGAGLFQTYRFIVERDLREGTLAEVLSGQGGRSRPFMLLYPHARYLSSRVRVFVDFLVEHLEQAPDKRKR

Sequences:

>Translated_310_residues
MQRKFDDLLLGSIELFCLAAELGSFTLAATAASVTPAAVSRSVARLEERLGVRLFVRTTRQIRLTDSGRRYFEQCRDALS
QLVDAEREATGQQATPAGVLRISMPTPYGHYRVLPLLPAFRERYPDVCVETHLSNRNIDFAEEGFDLAIRGRAPADSSLV
ARKLEDAELVVVATPGYLKRAGVPRAVDDLHAHECIQFELPSSGRPIPWLFNDGAAEIEIATTGGYGTSGDVLAGVTLAR
SGAGLFQTYRFIVERDLREGTLAEVLSGQGGRSRPFMLLYPHARYLSSRVRVFVDFLVEHLEQAPDKRKR
>Mature_310_residues
MQRKFDDLLLGSIELFCLAAELGSFTLAATAASVTPAAVSRSVARLEERLGVRLFVRTTRQIRLTDSGRRYFEQCRDALS
QLVDAEREATGQQATPAGVLRISMPTPYGHYRVLPLLPAFRERYPDVCVETHLSNRNIDFAEEGFDLAIRGRAPADSSLV
ARKLEDAELVVVATPGYLKRAGVPRAVDDLHAHECIQFELPSSGRPIPWLFNDGAAEIEIATTGGYGTSGDVLAGVTLAR
SGAGLFQTYRFIVERDLREGTLAEVLSGQGGRSRPFMLLYPHARYLSSRVRVFVDFLVEHLEQAPDKRKR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=292, Percent_Identity=36.6438356164384, Blast_Score=182, Evalue=4e-47,
Organism=Escherichia coli, GI145693193, Length=296, Percent_Identity=32.0945945945946, Blast_Score=141, Evalue=4e-35,
Organism=Escherichia coli, GI1787128, Length=284, Percent_Identity=32.7464788732394, Blast_Score=138, Evalue=4e-34,
Organism=Escherichia coli, GI1789639, Length=300, Percent_Identity=29, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1787589, Length=283, Percent_Identity=29.6819787985866, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1789440, Length=289, Percent_Identity=26.9896193771626, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI87081978, Length=301, Percent_Identity=27.906976744186, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1788706, Length=189, Percent_Identity=30.1587301587302, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1786448, Length=297, Percent_Identity=26.2626262626263, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1789173, Length=191, Percent_Identity=31.9371727748691, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI157672245, Length=128, Percent_Identity=36.71875, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1788481, Length=298, Percent_Identity=27.8523489932886, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI145693105, Length=173, Percent_Identity=28.3236994219653, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1790011, Length=297, Percent_Identity=22.8956228956229, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI87082132, Length=161, Percent_Identity=29.1925465838509, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34293; Mature: 34293

Theoretical pI: Translated: 7.55; Mature: 7.55

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRKFDDLLLGSIELFCLAAELGSFTLAATAASVTPAAVSRSVARLEERLGVRLFVRTTR
CCCCHHHHHHHHHHHHHHHHHHCCEEEEHHHHHCCHHHHHHHHHHHHHHCCEEEEEEECE
QIRLTDSGRRYFEQCRDALSQLVDAEREATGQQATPAGVLRISMPTPYGHYRVLPLLPAF
EEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCEEHHHCCHHH
RERYPDVCVETHLSNRNIDFAEEGFDLAIRGRAPADSSLVARKLEDAELVVVATPGYLKR
HHHCCCCEEHHHCCCCCCCHHCCCCCEEEECCCCCCHHHHHHHCCCCCEEEEECCCHHHH
AGVPRAVDDLHAHECIQFELPSSGRPIPWLFNDGAAEIEIATTGGYGTSGDVLAGVTLAR
CCCCHHHHHHHHHHEEEEECCCCCCCCCEEECCCCCEEEEEECCCCCCCCCHHHHHHHHC
SGAGLFQTYRFIVERDLREGTLAEVLSGQGGRSRPFMLLYPHARYLSSRVRVFVDFLVEH
CCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHH
LEQAPDKRKR
HHHCCHHCCC
>Mature Secondary Structure
MQRKFDDLLLGSIELFCLAAELGSFTLAATAASVTPAAVSRSVARLEERLGVRLFVRTTR
CCCCHHHHHHHHHHHHHHHHHHCCEEEEHHHHHCCHHHHHHHHHHHHHHCCEEEEEEECE
QIRLTDSGRRYFEQCRDALSQLVDAEREATGQQATPAGVLRISMPTPYGHYRVLPLLPAF
EEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCEEHHHCCHHH
RERYPDVCVETHLSNRNIDFAEEGFDLAIRGRAPADSSLVARKLEDAELVVVATPGYLKR
HHHCCCCEEHHHCCCCCCCHHCCCCCEEEECCCCCCHHHHHHHCCCCCEEEEECCCHHHH
AGVPRAVDDLHAHECIQFELPSSGRPIPWLFNDGAAEIEIATTGGYGTSGDVLAGVTLAR
CCCCHHHHHHHHHHEEEEECCCCCCCCCEEECCCCCEEEEEECCCCCCCCCHHHHHHHHC
SGAGLFQTYRFIVERDLREGTLAEVLSGQGGRSRPFMLLYPHARYLSSRVRVFVDFLVEH
CCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHH
LEQAPDKRKR
HHHCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]