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The map label for this gene is pecS [H]

Identifier: 115351633

GI number: 115351633

Start: 1748247

End: 1748780

Strand: Direct

Name: pecS [H]

Synonym: Bamb_1580

Alternate gene names: 115351633

Gene position: 1748247-1748780 (Clockwise)

Preceding gene: 115351631

Following gene: 115351637

Centisome position: 49.16

GC content: 70.04

Gene sequence:

>534_bases
ATGGATCGAGCCGCGCATGCGCTCGCGCAATGGCGCGTCGAGCGTCCGGATCTGGATGCGTCGTCGATGCTCGTGATGGG
ACGGCTGCAGGAAGCCGCGCTCGTGATCGCGCGCGACGGCCTCAATCCGCTTTTCGCGCGCTACGGGTTGCAGCCGGGCG
AATTCGACGTGCTGGCGACGCTGCGACGCAGCGGCGCGCCGTTCGCGCTGACGCCGACCGCGCTGTACGACGCGCTGATG
ATGTCGTCGGGCGGGATGACCGCACGGATCGACCGGTTGCACAAGGCCGGTTGGGTCGAGCGTCTGCCGAATCCCGCCGA
CGGCCGCGGCACGCTCGTCGCGCTGACGGACGCGGGCCGCGCGCTGATCGACGAGGCGGTGGTCGCGCACGTCGACAATC
AGCGCGCGATGCTGGCGGTGCTGTCGCAGGCGGAGCAGACGCAGTTGTCGGCGCTGCTGGAAAAGCTGCTGGCGGGGTTG
GAGGGAGGGGAGTCGGCGCCGGTAGAAAAGCAGCGGCGCGGATCGTCACGCTGA

Upstream 100 bases:

>100_bases
GCCGTCGGCGTGGCGTGCGTTTTCATGTAAAGTATCTCGACATCAAGATAAATCGGCATTTATCTCGACGTCAAGATAAC
TGGTGAGCCGAGGAGGGTTA

Downstream 100 bases:

>100_bases
GTCACGCTGAACGCGACGCGCGGATAGCAGAAACGCAGAAACGCAGAAACGCAGAAACGCAGAAACGCAGAAACGCAGAA
ACGCAGAAACGCAGAAACGC

Product: MarR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 177; Mature: 177

Protein sequence:

>177_residues
MDRAAHALAQWRVERPDLDASSMLVMGRLQEAALVIARDGLNPLFARYGLQPGEFDVLATLRRSGAPFALTPTALYDALM
MSSGGMTARIDRLHKAGWVERLPNPADGRGTLVALTDAGRALIDEAVVAHVDNQRAMLAVLSQAEQTQLSALLEKLLAGL
EGGESAPVEKQRRGSSR

Sequences:

>Translated_177_residues
MDRAAHALAQWRVERPDLDASSMLVMGRLQEAALVIARDGLNPLFARYGLQPGEFDVLATLRRSGAPFALTPTALYDALM
MSSGGMTARIDRLHKAGWVERLPNPADGRGTLVALTDAGRALIDEAVVAHVDNQRAMLAVLSQAEQTQLSALLEKLLAGL
EGGESAPVEKQRRGSSR
>Mature_177_residues
MDRAAHALAQWRVERPDLDASSMLVMGRLQEAALVIARDGLNPLFARYGLQPGEFDVLATLRRSGAPFALTPTALYDALM
MSSGGMTARIDRLHKAGWVERLPNPADGRGTLVALTDAGRALIDEAVVAHVDNQRAMLAVLSQAEQTQLSALLEKLLAGL
EGGESAPVEKQRRGSSR

Specific function: Negative regulator of pectinase, cellulase, blue pigment production and virulence genes. Also binds to promoter sites in the pecS-pecM intergenic region and negatively autoregulate its expression as well as that of pecM [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081927, Length=119, Percent_Identity=35.2941176470588, Blast_Score=67, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR023187
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 19026; Mature: 19026

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRAAHALAQWRVERPDLDASSMLVMGRLQEAALVIARDGLNPLFARYGLQPGEFDVLAT
CCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHEEEECCCCCHHHHHHCCCCCCHHHHHH
LRRSGAPFALTPTALYDALMMSSGGMTARIDRLHKAGWVERLPNPADGRGTLVALTDAGR
HHHCCCCEEECHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCH
ALIDEAVVAHVDNQRAMLAVLSQAEQTQLSALLEKLLAGLEGGESAPVEKQRRGSSR
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCC
>Mature Secondary Structure
MDRAAHALAQWRVERPDLDASSMLVMGRLQEAALVIARDGLNPLFARYGLQPGEFDVLAT
CCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHEEEECCCCCHHHHHHCCCCCCHHHHHH
LRRSGAPFALTPTALYDALMMSSGGMTARIDRLHKAGWVERLPNPADGRGTLVALTDAGR
HHHCCCCEEECHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCH
ALIDEAVVAHVDNQRAMLAVLSQAEQTQLSALLEKLLAGLEGGESAPVEKQRRGSSR
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8022282; 9194707 [H]