| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
Click here to switch to the map view.
The map label for this gene is 115351615
Identifier: 115351615
GI number: 115351615
Start: 1730043
End: 1730369
Strand: Direct
Name: 115351615
Synonym: Bamb_1562
Alternate gene names: NA
Gene position: 1730043-1730369 (Clockwise)
Preceding gene: 115351614
Following gene: 115351618
Centisome position: 48.64
GC content: 66.67
Gene sequence:
>327_bases ATGACGCGGGCGCTCTTCAACTGCAGCCGCAACCGGCTGCACAGCCCGACCGCCGAAGCCGTGTTCGCGGCATGGCCGGG TGTCGAAACCGACTCCGCGGGGCTCGCGCCCGACGCCGACACGCAAGTGTGCGTCGAGCAGCTCGAATGGGCCGAGATCG TGTTCGTAATGGAGCGCGCGCACAAGGCGAAGCTCACCGCCCGGTTCGGCGCCCGACTGAAGCACAAGAAGATCGTCTGC CTCGACATTCCCGACCGCTACACGTACATGCAGCCCGAGCTGATCGCGCTGCTCGAACGCAAGGTCGGGCCGTTGCTGCG CGCATGA
Upstream 100 bases:
>100_bases CAAGGCCGACTACGTGCCGCACATGCTGGCGTACGTGCGCCCCGACACGATTCCGCAGGGTTGAACGGATGACCGGACGA GCCGGTCGCGGCGCGCCGGC
Downstream 100 bases:
>100_bases CCGGGGCGTGACCGGCGCGGGGCCGGTTCAGCGCAGACGAAGCGGGCCGTCAGCAAGCGGGGAAAAGCGGTCGAGGTGCA GCAGCTCGATGATCTTGCGG
Product: low molecular weight phosphotyrosine protein phosphatase
Products: NA
Alternate protein names: Protein-Tyrosine Phosphatase Low Molecular Weight; Protein-Tyrosine-Phosphatase; Phosphatase; Phosphotyrosine Protein Phosphatase; Protein Tyrosine Phosphatase; Protein Tyrosine Phosphatase-Like Protein
Number of amino acids: Translated: 108; Mature: 107
Protein sequence:
>108_residues MTRALFNCSRNRLHSPTAEAVFAAWPGVETDSAGLAPDADTQVCVEQLEWAEIVFVMERAHKAKLTARFGARLKHKKIVC LDIPDRYTYMQPELIALLERKVGPLLRA
Sequences:
>Translated_108_residues MTRALFNCSRNRLHSPTAEAVFAAWPGVETDSAGLAPDADTQVCVEQLEWAEIVFVMERAHKAKLTARFGARLKHKKIVC LDIPDRYTYMQPELIALLERKVGPLLRA >Mature_107_residues TRALFNCSRNRLHSPTAEAVFAAWPGVETDSAGLAPDADTQVCVEQLEWAEIVFVMERAHKAKLTARFGARLKHKKIVCL DIPDRYTYMQPELIALLERKVGPLLRA
Specific function: Unknown
COG id: COG4551
COG function: function code R; Predicted protein tyrosine phosphatase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 12164; Mature: 12033
Theoretical pI: Translated: 8.50; Mature: 8.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.8 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 5.6 %Cys+Met (Translated Protein) 2.8 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRALFNCSRNRLHSPTAEAVFAAWPGVETDSAGLAPDADTQVCVEQLEWAEIVFVMERA CCCCHHCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH HKAKLTARFGARLKHKKIVCLDIPDRYTYMQPELIALLERKVGPLLRA HHHHHHHHHCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCC >Mature Secondary Structure TRALFNCSRNRLHSPTAEAVFAAWPGVETDSAGLAPDADTQVCVEQLEWAEIVFVMERA CCCHHCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH HKAKLTARFGARLKHKKIVCLDIPDRYTYMQPELIALLERKVGPLLRA HHHHHHHHHCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA