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The map label for this gene is yfdE [H]

Identifier: 115351618

GI number: 115351618

Start: 1731499

End: 1732665

Strand: Direct

Name: yfdE [H]

Synonym: Bamb_1565

Alternate gene names: 115351618

Gene position: 1731499-1732665 (Clockwise)

Preceding gene: 115351615

Following gene: 115351619

Centisome position: 48.68

GC content: 70.95

Gene sequence:

>1167_bases
ATGGCGGAGCTGGAGCAGCAGGGCGCGTTGGCGGGGTTGCGCATCATCGATCTGTCGCGGGTGCTGGGCGGCCCGTACGC
GACCCAGATTCTCGCCGACCACGGCGCGGAGGTGATCAAGGTCGAACCGCCGTCGGGCGACGAGACGCGCACCTGGGGCC
CGCCGTTCGACGGCGACACCGCGTCGTATTTCCTCGGCGTGAACCGCAACAAGCTCGGCATCGCGCTCGACCTGACGAAG
CCGGAAGATCGCGAACGGCTGCTCGGGCTGCTCGAACATGCGGACGCGCTGGTCGAGAACTTCAAGATCGGCACGATGGA
ACGCTGGGGCCTCGGCTTCGACGTGCTGCATGCGCGCTTTCCGCGCCTCGTCTATTGCCGCGTGTCGGGCTTCGGCGCGG
ACGGCCCGCTCGGCGGGCTGCCCGGCTACGACGCGGCCGTGCAGGCGCTGGCCGGGCTGATGAGCGTGAATGGCGAAGCG
GGGGGCGCGCCGCTGCGCGTGGGCGTGCCGATCGTCGATCTCGTCACCGGGCTGAACGCGGCGCTCGGCGTGCTGATGGC
GCTGCGCGAACGCGATGCGAGCGGGCGCGGCCAGTTCGTCGAATCGACGCTGTTCGACTGCGCGCTGTCGATCCTGCATC
CGCATACGCCGAATTTCTTCCACTCCGGGAAGGCGCCGGTGCGCACCGGCAACGCGCATCCGAACATCACGCCGTACGAC
AGCTTTCCGACCGCGAGCGTCGACATCTTTCTCGCGGTCGGCAACAACGGGCAGTTCGCCGCGCTGTGCGACGTGCTCGG
CACGCGCGACTGGCCCGACGACCCGCGCTTCACCGACAACCGCGCGCGCAGCGCGAACCGCGCCGCATTGCGCGCGCTGC
TCGAAACGGCGCTGGCCGCACACGACGGCGCGGCGCTCGCCGAGCAGCTGATGCGCCGCGGCGTGCCGTGCGCGCCCGTG
CTCGGGCTCGATGCGGCGCTCGACCATCCGCACGTCGCGCATCGGCAGATGAAGGTCGAACTGGGCCGGCACCGCGGCAT
CGCGTCGCCGATCAAGCTCGGCCGCACGCCGGCCACGTACCGGCGGCCGCCGCCCGCGCTGAACGAACACGCGGCGCAGG
TGTTTGCCGACGCGCCACGAGACGACAACGGCGAGCACGGCAACTGA

Upstream 100 bases:

>100_bases
TTCACGCACAAGAATTATTATTCGAGCCAGGAAAACCGCGCCGCACAGTCGGCATGGCGGAACCCGGCGGTCCGAACAAC
CGGAAGCAGGAGCGAGACGC

Downstream 100 bases:

>100_bases
CACGCAGCGCGGCCGGCGGCAATGCGATGGCGTCGCCCGCCGCCGCACCGCGTCACGCCGCTTCGAACATCACGCCGCGC
CGCGCCCCGATGCGCGCCGG

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 388; Mature: 387

Protein sequence:

>388_residues
MAELEQQGALAGLRIIDLSRVLGGPYATQILADHGAEVIKVEPPSGDETRTWGPPFDGDTASYFLGVNRNKLGIALDLTK
PEDRERLLGLLEHADALVENFKIGTMERWGLGFDVLHARFPRLVYCRVSGFGADGPLGGLPGYDAAVQALAGLMSVNGEA
GGAPLRVGVPIVDLVTGLNAALGVLMALRERDASGRGQFVESTLFDCALSILHPHTPNFFHSGKAPVRTGNAHPNITPYD
SFPTASVDIFLAVGNNGQFAALCDVLGTRDWPDDPRFTDNRARSANRAALRALLETALAAHDGAALAEQLMRRGVPCAPV
LGLDAALDHPHVAHRQMKVELGRHRGIASPIKLGRTPATYRRPPPALNEHAAQVFADAPRDDNGEHGN

Sequences:

>Translated_388_residues
MAELEQQGALAGLRIIDLSRVLGGPYATQILADHGAEVIKVEPPSGDETRTWGPPFDGDTASYFLGVNRNKLGIALDLTK
PEDRERLLGLLEHADALVENFKIGTMERWGLGFDVLHARFPRLVYCRVSGFGADGPLGGLPGYDAAVQALAGLMSVNGEA
GGAPLRVGVPIVDLVTGLNAALGVLMALRERDASGRGQFVESTLFDCALSILHPHTPNFFHSGKAPVRTGNAHPNITPYD
SFPTASVDIFLAVGNNGQFAALCDVLGTRDWPDDPRFTDNRARSANRAALRALLETALAAHDGAALAEQLMRRGVPCAPV
LGLDAALDHPHVAHRQMKVELGRHRGIASPIKLGRTPATYRRPPPALNEHAAQVFADAPRDDNGEHGN
>Mature_387_residues
AELEQQGALAGLRIIDLSRVLGGPYATQILADHGAEVIKVEPPSGDETRTWGPPFDGDTASYFLGVNRNKLGIALDLTKP
EDRERLLGLLEHADALVENFKIGTMERWGLGFDVLHARFPRLVYCRVSGFGADGPLGGLPGYDAAVQALAGLMSVNGEAG
GAPLRVGVPIVDLVTGLNAALGVLMALRERDASGRGQFVESTLFDCALSILHPHTPNFFHSGKAPVRTGNAHPNITPYDS
FPTASVDIFLAVGNNGQFAALCDVLGTRDWPDDPRFTDNRARSANRAALRALLETALAAHDGAALAEQLMRRGVPCAPVL
GLDAALDHPHVAHRQMKVELGRHRGIASPIKLGRTPATYRRPPPALNEHAAQVFADAPRDDNGEHGN

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=380, Percent_Identity=34.2105263157895, Blast_Score=245, Evalue=4e-65,
Organism=Homo sapiens, GI300863124, Length=406, Percent_Identity=32.7586206896552, Blast_Score=231, Evalue=7e-61,
Organism=Homo sapiens, GI13376042, Length=406, Percent_Identity=30.2955665024631, Blast_Score=199, Evalue=3e-51,
Organism=Homo sapiens, GI300863126, Length=380, Percent_Identity=30.5263157894737, Blast_Score=194, Evalue=1e-49,
Organism=Homo sapiens, GI42794625, Length=199, Percent_Identity=34.1708542713568, Blast_Score=108, Evalue=6e-24,
Organism=Homo sapiens, GI266456254, Length=199, Percent_Identity=34.1708542713568, Blast_Score=108, Evalue=6e-24,
Organism=Homo sapiens, GI266458397, Length=199, Percent_Identity=34.1708542713568, Blast_Score=107, Evalue=1e-23,
Organism=Homo sapiens, GI266458393, Length=199, Percent_Identity=34.1708542713568, Blast_Score=107, Evalue=1e-23,
Organism=Homo sapiens, GI266458395, Length=144, Percent_Identity=35.4166666666667, Blast_Score=85, Evalue=1e-16,
Organism=Homo sapiens, GI42822893, Length=144, Percent_Identity=35.4166666666667, Blast_Score=85, Evalue=1e-16,
Organism=Escherichia coli, GI87082093, Length=376, Percent_Identity=37.7659574468085, Blast_Score=260, Evalue=1e-70,
Organism=Escherichia coli, GI1788717, Length=406, Percent_Identity=27.0935960591133, Blast_Score=131, Evalue=6e-32,
Organism=Escherichia coli, GI1786222, Length=338, Percent_Identity=26.3313609467456, Blast_Score=93, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI32564160, Length=264, Percent_Identity=26.1363636363636, Blast_Score=79, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI115535051, Length=205, Percent_Identity=27.8048780487805, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24648431, Length=385, Percent_Identity=36.6233766233766, Blast_Score=242, Evalue=3e-64,
Organism=Drosophila melanogaster, GI24585488, Length=203, Percent_Identity=32.0197044334975, Blast_Score=96, Evalue=4e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 41395; Mature: 41264

Theoretical pI: Translated: 6.39; Mature: 6.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAELEQQGALAGLRIIDLSRVLGGPYATQILADHGAEVIKVEPPSGDETRTWGPPFDGDT
CCCCHHCCCHHCCHHEEHHHHHCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCC
ASYFLGVNRNKLGIALDLTKPEDRERLLGLLEHADALVENFKIGTMERWGLGFDVLHARF
CEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHCC
PRLVYCRVSGFGADGPLGGLPGYDAAVQALAGLMSVNGEAGGAPLRVGVPIVDLVTGLNA
CEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEECCHHHHHHHHHHH
ALGVLMALRERDASGRGQFVESTLFDCALSILHPHTPNFFHSGKAPVRTGNAHPNITPYD
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
SFPTASVDIFLAVGNNGQFAALCDVLGTRDWPDDPRFTDNRARSANRAALRALLETALAA
CCCCCCEEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
HDGAALAEQLMRRGVPCAPVLGLDAALDHPHVAHRQMKVELGRHRGIASPIKLGRTPATY
CCCHHHHHHHHHCCCCCCCHHCCHHHCCCCHHHHHHHHHHHHHCCCCCCHHHCCCCCCCC
RRPPPALNEHAAQVFADAPRDDNGEHGN
CCCCCCHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
AELEQQGALAGLRIIDLSRVLGGPYATQILADHGAEVIKVEPPSGDETRTWGPPFDGDT
CCCHHCCCHHCCHHEEHHHHHCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCC
ASYFLGVNRNKLGIALDLTKPEDRERLLGLLEHADALVENFKIGTMERWGLGFDVLHARF
CEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHCC
PRLVYCRVSGFGADGPLGGLPGYDAAVQALAGLMSVNGEAGGAPLRVGVPIVDLVTGLNA
CEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEECCHHHHHHHHHHH
ALGVLMALRERDASGRGQFVESTLFDCALSILHPHTPNFFHSGKAPVRTGNAHPNITPYD
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
SFPTASVDIFLAVGNNGQFAALCDVLGTRDWPDDPRFTDNRARSANRAALRALLETALAA
CCCCCCEEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
HDGAALAEQLMRRGVPCAPVLGLDAALDHPHVAHRQMKVELGRHRGIASPIKLGRTPATY
CCCHHHHHHHHHCCCCCCCHHCCHHHCCCCHHHHHHHHHHHHHCCCCCCHHHCCCCCCCC
RRPPPALNEHAAQVFADAPRDDNGEHGN
CCCCCCHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]