| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is iucB [H]
Identifier: 115351596
GI number: 115351596
Start: 1710390
End: 1711406
Strand: Direct
Name: iucB [H]
Synonym: Bamb_1543
Alternate gene names: 115351596
Gene position: 1710390-1711406 (Clockwise)
Preceding gene: 115351595
Following gene: 115351597
Centisome position: 48.09
GC content: 69.71
Gene sequence:
>1017_bases ATGGAAGACACCCTCACGAAACCGGCCGGCCCGGCGGACGCCGTCGAAGGCGAGGTGGCCGCGGCGCTCGACGGCGCGGC GCCCGCGCATGCGACGGCCGCCGCCGAGCGCACGCTCGACGCGTGGCGGCCTGACGATCCGCCGGCCGCGCTGCTCGCGG AATTCGTCGCGCTGTTCAACACGGACACGCGGCACGACGCGGCGACGGTGTCGGTGCCGCTCGGCGGCGCCGGGCCGGCG GCCGTCGCGTCGTACGTCGCGCGCGCGGTGCGCGAGGGCGTGATCGACGGCGCACAGGTCGCGGGCGACCGGCTGCGGCT GAGCGCATCGCGCGCGACGTTCTGGCAGAACCCGCGGCCGTGGCTGAAGGCGCCTGCATCGGGCGGGATGCCGCTGCGCT ACGCGATCACGAACGGCCACCGGCATCCGGTGCGGCCGCCGTCGCCGGCCGGCGAGATCTATGCGCGCTACATGCCGCAG GTCGGGATGACGTTCAGCCTGCGCACCGTCGACATCGACGAGCATGCGCAGTTGTTCAGCGACTGGATGAACCTCGATCG CGTCGCGCATTTCTGGGATCAGCGCGGCACGCGCGACGAGCACGCCGCGTATCTCGCGGAGCGGCTCGCCGATCCGCACA TGCATCCGATGATCGGCTATTTCGACGACACGCCGTTCGGCTATTTCGAGTTCTACTGGGCGAAGGAGGACCGCCTCGCG CCGTTCTACGACGCGCACGACTACGATCGCGGGCTGCATCTGCTGATCGGCGACTCGCGCTTCCAGAGCGCGGGCAAGCT GCATGCATGGTGGAGCGGGGTGCTGCACTACATGTTCGTCGACGAACCGCGCACGCAGCGGCTCGTCGGCGAGCCGCGCG TCGATCACGTGCGGCATATCGCGTACATGCATCGGCTCGGGTTCTACACGCTGAAGGAGTTCGACTTCCCGCACAAGCGG GCGGCGCTCACCGTGATGGAGCGCGAAACGTTCTTTGACACTTTCCGGTTGCCGTGA
Upstream 100 bases:
>100_bases TTCTCGAACTGCGCTGGAACAACTTCCAGCGCAGCCTGTTTCCGGCGCTCGAGCGGGGGCTGCACATCCTCGCCGACCGC CACGACGCGGGAGCACTGTG
Downstream 100 bases:
>100_bases TGGAGCGGGGGCGCGAAGCGTCGATGCGCCGATGCGTCAATTCGCAAGCGACGACGTTTCGCGCGGTCGAAGGGCCGCGG ACATCGGCTGTTCGGGATAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 338; Mature: 338
Protein sequence:
>338_residues MEDTLTKPAGPADAVEGEVAAALDGAAPAHATAAAERTLDAWRPDDPPAALLAEFVALFNTDTRHDAATVSVPLGGAGPA AVASYVARAVREGVIDGAQVAGDRLRLSASRATFWQNPRPWLKAPASGGMPLRYAITNGHRHPVRPPSPAGEIYARYMPQ VGMTFSLRTVDIDEHAQLFSDWMNLDRVAHFWDQRGTRDEHAAYLAERLADPHMHPMIGYFDDTPFGYFEFYWAKEDRLA PFYDAHDYDRGLHLLIGDSRFQSAGKLHAWWSGVLHYMFVDEPRTQRLVGEPRVDHVRHIAYMHRLGFYTLKEFDFPHKR AALTVMERETFFDTFRLP
Sequences:
>Translated_338_residues MEDTLTKPAGPADAVEGEVAAALDGAAPAHATAAAERTLDAWRPDDPPAALLAEFVALFNTDTRHDAATVSVPLGGAGPA AVASYVARAVREGVIDGAQVAGDRLRLSASRATFWQNPRPWLKAPASGGMPLRYAITNGHRHPVRPPSPAGEIYARYMPQ VGMTFSLRTVDIDEHAQLFSDWMNLDRVAHFWDQRGTRDEHAAYLAERLADPHMHPMIGYFDDTPFGYFEFYWAKEDRLA PFYDAHDYDRGLHLLIGDSRFQSAGKLHAWWSGVLHYMFVDEPRTQRLVGEPRVDHVRHIAYMHRLGFYTLKEFDFPHKR AALTVMERETFFDTFRLP >Mature_338_residues MEDTLTKPAGPADAVEGEVAAALDGAAPAHATAAAERTLDAWRPDDPPAALLAEFVALFNTDTRHDAATVSVPLGGAGPA AVASYVARAVREGVIDGAQVAGDRLRLSASRATFWQNPRPWLKAPASGGMPLRYAITNGHRHPVRPPSPAGEIYARYMPQ VGMTFSLRTVDIDEHAQLFSDWMNLDRVAHFWDQRGTRDEHAAYLAERLADPHMHPMIGYFDDTPFGYFEFYWAKEDRLA PFYDAHDYDRGLHLLIGDSRFQSAGKLHAWWSGVLHYMFVDEPRTQRLVGEPRVDHVRHIAYMHRLGFYTLKEFDFPHKR AALTVMERETFFDTFRLP
Specific function: Unknown
COG id: COG1670
COG function: function code J; Acetyltransferases, including N-acetylases of ribosomal proteins
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the iucB family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016181 - InterPro: IPR019432 [H]
Pfam domain/function: PF10331 AlcB [H]
EC number: NA
Molecular weight: Translated: 37969; Mature: 37969
Theoretical pI: Translated: 6.36; Mature: 6.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEDTLTKPAGPADAVEGEVAAALDGAAPAHATAAAERTLDAWRPDDPPAALLAEFVALFN CCCCCCCCCCCCHHHCCHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC TDTRHDAATVSVPLGGAGPAAVASYVARAVREGVIDGAQVAGDRLRLSASRATFWQNPRP CCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCHHHCCCCEEEEHHHHHHCCCCCC WLKAPASGGMPLRYAITNGHRHPVRPPSPAGEIYARYMPQVGMTFSLRTVDIDEHAQLFS HHCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEEECCHHHHHHHH DWMNLDRVAHFWDQRGTRDEHAAYLAERLADPHMHPMIGYFDDTPFGYFEFYWAKEDRLA HHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCC PFYDAHDYDRGLHLLIGDSRFQSAGKLHAWWSGVLHYMFVDEPRTQRLVGEPRVDHVRHI CCCCCCCCCCCEEEEEECHHHHCCCCHHHHHHHHHHEEECCCCHHHHHCCCCCHHHHHHH AYMHRLGFYTLKEFDFPHKRAALTVMERETFFDTFRLP HHHHHHCCHHHHHCCCCCHHHHEEHHHHHHHHHHHCCC >Mature Secondary Structure MEDTLTKPAGPADAVEGEVAAALDGAAPAHATAAAERTLDAWRPDDPPAALLAEFVALFN CCCCCCCCCCCCHHHCCHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC TDTRHDAATVSVPLGGAGPAAVASYVARAVREGVIDGAQVAGDRLRLSASRATFWQNPRP CCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCHHHCCCCEEEEHHHHHHCCCCCC WLKAPASGGMPLRYAITNGHRHPVRPPSPAGEIYARYMPQVGMTFSLRTVDIDEHAQLFS HHCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEEECCHHHHHHHH DWMNLDRVAHFWDQRGTRDEHAAYLAERLADPHMHPMIGYFDDTPFGYFEFYWAKEDRLA HHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCC PFYDAHDYDRGLHLLIGDSRFQSAGKLHAWWSGVLHYMFVDEPRTQRLVGEPRVDHVRHI CCCCCCCCCCCEEEEEECHHHHCCCCHHHHHHHHHHEEECCCCHHHHHCCCCCHHHHHHH AYMHRLGFYTLKEFDFPHKRAALTVMERETFFDTFRLP HHHHHHCCHHHHHCCCCCHHHHEEHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8003107 [H]