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The map label for this gene is yecS [H]

Identifier: 115351570

GI number: 115351570

Start: 1665337

End: 1666062

Strand: Direct

Name: yecS [H]

Synonym: Bamb_1517

Alternate gene names: 115351570

Gene position: 1665337-1666062 (Clockwise)

Preceding gene: 115351569

Following gene: 115351573

Centisome position: 46.82

GC content: 69.83

Gene sequence:

>726_bases
ATGGACGTCTCACTGCTGCTCGACAACCTGCCGTACCTGCTCGTCGGTGCGTTCCCGGACGGTCCGCTCGGCGGCGCCGC
GCTGTCGCTCGTGCTGGCGATCGCGTCGGCCGTCGCGTCGGCGGGGCTGGGGGTGGCGCTCGGCGTCGCGATGGCGCTCG
CGCGCGGCCCGCTGCGCGTGCTGCTGCTCGCGTTCATCGGCTTCTTTCGCGCGATTCCGGTGCTGATGCTGATCTTCTGG
ACGTATTTCCTGCTGCCGATGCTGCTGCACGTGGACGTGCCGGGGCTCGCGACGGTCGTGTGTGCGCTGGCGCTGATCGG
TGGCGCGTATCTCGCGCATGCGGTGCATGCGGGCATCGTCGCGGCCGGCGACGGGCAGTGGCAGGCCGGGCTGTCGCTCG
GGCTCACGCGCTGGCAGACGGTGCGTTACGTGCTGCTGCCGCAGGCGATCCGGATCATGACGCCGTCGTTCGTCAACCAG
TGGGTTGCGCTCGTGAAGGACACGTCGCTCGCGTATATCGTCGGCGTGCCGGAACTGTCGTTCGTCGCGACGCAGGTGAA
CAACCGGCTGATGGTGTATCCGGCGCCGATCTTCCTGTTCGTCGCGGCGCTTTACCTGGTGCTGTGCACGTCGCTCGACG
GCGCGGCGCGCTGGCTGCTGTCACGTCGGCCGCGTGCGGCGCGCATCGCGCAGGCCGCGGCCGAACGTACGGAACCCGTG
CGGTGA

Upstream 100 bases:

>100_bases
GTGTCGCGACCGTGCTGTACGTCGCCGCGGTGGCCGCGATCGAGGCCGGCGCCTACGCGGCCACGCAATGGCGCGACCGG
CTCGCGGCGGGGCGTTGACG

Downstream 100 bases:

>100_bases
CGGCGGGCCGTGTCGCTGCTGCGGCGAGCGGCGACGGGTATGACGGTGCTTCGCTGCGTCGGCGTCAGGACGCGCTGTAG
TGCGTGTTGAAGACCGCGCG

Product: polar amino acid ABC transporter inner membrane subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 241

Protein sequence:

>241_residues
MDVSLLLDNLPYLLVGAFPDGPLGGAALSLVLAIASAVASAGLGVALGVAMALARGPLRVLLLAFIGFFRAIPVLMLIFW
TYFLLPMLLHVDVPGLATVVCALALIGGAYLAHAVHAGIVAAGDGQWQAGLSLGLTRWQTVRYVLLPQAIRIMTPSFVNQ
WVALVKDTSLAYIVGVPELSFVATQVNNRLMVYPAPIFLFVAALYLVLCTSLDGAARWLLSRRPRAARIAQAAAERTEPV
R

Sequences:

>Translated_241_residues
MDVSLLLDNLPYLLVGAFPDGPLGGAALSLVLAIASAVASAGLGVALGVAMALARGPLRVLLLAFIGFFRAIPVLMLIFW
TYFLLPMLLHVDVPGLATVVCALALIGGAYLAHAVHAGIVAAGDGQWQAGLSLGLTRWQTVRYVLLPQAIRIMTPSFVNQ
WVALVKDTSLAYIVGVPELSFVATQVNNRLMVYPAPIFLFVAALYLVLCTSLDGAARWLLSRRPRAARIAQAAAERTEPV
R
>Mature_241_residues
MDVSLLLDNLPYLLVGAFPDGPLGGAALSLVLAIASAVASAGLGVALGVAMALARGPLRVLLLAFIGFFRAIPVLMLIFW
TYFLLPMLLHVDVPGLATVVCALALIGGAYLAHAVHAGIVAAGDGQWQAGLSLGLTRWQTVRYVLLPQAIRIMTPSFVNQ
WVALVKDTSLAYIVGVPELSFVATQVNNRLMVYPAPIFLFVAALYLVLCTSLDGAARWLLSRRPRAARIAQAAAERTEPV
R

Specific function: Probably part of the binding-protein-dependent transport system yecCS for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=235, Percent_Identity=32.3404255319149, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI1786873, Length=200, Percent_Identity=30, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1787030, Length=210, Percent_Identity=30.952380952381, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI87082239, Length=209, Percent_Identity=31.5789473684211, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI48994930, Length=87, Percent_Identity=39.0804597701149, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788646, Length=211, Percent_Identity=25.5924170616114, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1787087, Length=120, Percent_Identity=30.8333333333333, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1786874, Length=170, Percent_Identity=27.0588235294118, Blast_Score=61, Evalue=5e-11,
Organism=Escherichia coli, GI1787086, Length=165, Percent_Identity=29.0909090909091, Blast_Score=61, Evalue=7e-11,
Organism=Escherichia coli, GI1788645, Length=210, Percent_Identity=27.1428571428571, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 25613; Mature: 25613

Theoretical pI: Translated: 9.73; Mature: 9.73

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVSLLLDNLPYLLVGAFPDGPLGGAALSLVLAIASAVASAGLGVALGVAMALARGPLRV
CCHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHH
LLLAFIGFFRAIPVLMLIFWTYFLLPMLLHVDVPGLATVVCALALIGGAYLAHAVHAGIV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCEE
AAGDGQWQAGLSLGLTRWQTVRYVLLPQAIRIMTPSFVNQWVALVKDTSLAYIVGVPELS
ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCEEEEEECCCHH
FVATQVNNRLMVYPAPIFLFVAALYLVLCTSLDGAARWLLSRRPRAARIAQAAAERTEPV
HHHHHHCCEEEEECCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHCCCC
R
C
>Mature Secondary Structure
MDVSLLLDNLPYLLVGAFPDGPLGGAALSLVLAIASAVASAGLGVALGVAMALARGPLRV
CCHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHH
LLLAFIGFFRAIPVLMLIFWTYFLLPMLLHVDVPGLATVVCALALIGGAYLAHAVHAGIV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCEE
AAGDGQWQAGLSLGLTRWQTVRYVLLPQAIRIMTPSFVNQWVALVKDTSLAYIVGVPELS
ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCEEEEEECCCHH
FVATQVNNRLMVYPAPIFLFVAALYLVLCTSLDGAARWLLSRRPRAARIAQAAAERTEPV
HHHHHHCCEEEEECCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHCCCC
R
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]