| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is gltJ [H]
Identifier: 115351569
GI number: 115351569
Start: 1664612
End: 1665334
Strand: Direct
Name: gltJ [H]
Synonym: Bamb_1516
Alternate gene names: 115351569
Gene position: 1664612-1665334 (Clockwise)
Preceding gene: 115351568
Following gene: 115351570
Centisome position: 46.8
GC content: 69.71
Gene sequence:
>723_bases ATGCTCGGCTTGGCTCCCAAATATCTGTCCTGGCTCTGGCAGGGCTTCCTGCTCACGCTCGGCCTCGCGGCCGCGTCGGC GCTCGCCGCGACCGTCGGCGGGCTGCTGCTCGCCGTCATGCGGCATGCACGCGGCACAGCAGTGCGCACGGTGGCGGCCG GCTACGTCGTCGCATTCCGCAACACGCCGCTGCTCGTGCAATTGCTGTTCTGGTACTTCGGCGTCGCGTCGTTGCTGCCC GATACGTGGATCACGTGGCTGAACGCGCGTCATGAACTGAGCGCGGGCCCGCTCACGCTCGCGTGGCCGTCGTTCGAGTT CGTCGCCGGCTGGGTCGGCTTGAGCGCCTACACGGCCGCGTTCGTCGCCGAGGAATGCGAAGCCGGGCTGCGCGGCGTGC GCGGTGCGCAACACGACGCGGCCGCGGCGCTCGGCCTCACGCCGATGCAGTCGCTGCGCTACGTGGTGCTGCCGCAGGCC GTGCGCATCGCGCTGCCGTCGCTGTTCGGCCAATACATGAATCTCGTGAAGAACTCGTCGCTCGCGATGGCGATCGGTGT CGCCGAGCTGTCGTATGCGTCGCGGCAGGTCGAGACGGAGACGTTCAAGACCTTTGCCGCGTTCGGTGTCGCGACCGTGC TGTACGTCGCCGCGGTGGCCGCGATCGAGGCCGGCGCCTACGCGGCCACGCAATGGCGCGACCGGCTCGCGGCGGGGCGT TGA
Upstream 100 bases:
>100_bases CGCCGCGATCCGCCGCCGGCTGTGCCGGGATGCGCGGGTCGCGGCGCTTTGCGCTTGCTTCCATCTTCTTTCGCATTTTT CAGCGACCGCACACACCAGC
Downstream 100 bases:
>100_bases CGATGGACGTCTCACTGCTGCTCGACAACCTGCCGTACCTGCTCGTCGGTGCGTTCCCGGACGGTCCGCTCGGCGGCGCC GCGCTGTCGCTCGTGCTGGC
Product: polar amino acid ABC transporter inner membrane subunit
Products: ADP; phosphate; L-glutamate [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 240; Mature: 240
Protein sequence:
>240_residues MLGLAPKYLSWLWQGFLLTLGLAAASALAATVGGLLLAVMRHARGTAVRTVAAGYVVAFRNTPLLVQLLFWYFGVASLLP DTWITWLNARHELSAGPLTLAWPSFEFVAGWVGLSAYTAAFVAEECEAGLRGVRGAQHDAAAALGLTPMQSLRYVVLPQA VRIALPSLFGQYMNLVKNSSLAMAIGVAELSYASRQVETETFKTFAAFGVATVLYVAAVAAIEAGAYAATQWRDRLAAGR
Sequences:
>Translated_240_residues MLGLAPKYLSWLWQGFLLTLGLAAASALAATVGGLLLAVMRHARGTAVRTVAAGYVVAFRNTPLLVQLLFWYFGVASLLP DTWITWLNARHELSAGPLTLAWPSFEFVAGWVGLSAYTAAFVAEECEAGLRGVRGAQHDAAAALGLTPMQSLRYVVLPQA VRIALPSLFGQYMNLVKNSSLAMAIGVAELSYASRQVETETFKTFAAFGVATVLYVAAVAAIEAGAYAATQWRDRLAAGR >Mature_240_residues MLGLAPKYLSWLWQGFLLTLGLAAASALAATVGGLLLAVMRHARGTAVRTVAAGYVVAFRNTPLLVQLLFWYFGVASLLP DTWITWLNARHELSAGPLTLAWPSFEFVAGWVGLSAYTAAFVAEECEAGLRGVRGAQHDAAAALGLTPMQSLRYVVLPQA VRIALPSLFGQYMNLVKNSSLAMAIGVAELSYASRQVETETFKTFAAFGVATVLYVAAVAAIEAGAYAATQWRDRLAAGR
Specific function: Part of the binding-protein-dependent transport system for aspartate/glutamate; probably responsible for the translocation of the substrate across the membrane [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transmembrane type-1 domain [H]
Homologues:
Organism=Escherichia coli, GI1786874, Length=216, Percent_Identity=31.4814814814815, Blast_Score=114, Evalue=6e-27, Organism=Escherichia coli, GI1788226, Length=207, Percent_Identity=34.2995169082126, Blast_Score=102, Evalue=2e-23, Organism=Escherichia coli, GI48994930, Length=258, Percent_Identity=29.0697674418605, Blast_Score=99, Evalue=2e-22, Organism=Escherichia coli, GI1786873, Length=211, Percent_Identity=28.436018957346, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1788645, Length=204, Percent_Identity=29.4117647058824, Blast_Score=78, Evalue=5e-16, Organism=Escherichia coli, GI1787030, Length=205, Percent_Identity=28.780487804878, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1787087, Length=206, Percent_Identity=27.1844660194175, Blast_Score=68, Evalue=4e-13, Organism=Escherichia coli, GI87082239, Length=206, Percent_Identity=28.1553398058252, Blast_Score=65, Evalue=3e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010065 - InterPro: IPR000515 [H]
Pfam domain/function: PF00528 BPD_transp_1 [H]
EC number: NA
Molecular weight: Translated: 25584; Mature: 25584
Theoretical pI: Translated: 9.56; Mature: 9.56
Prosite motif: PS50928 ABC_TM1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLGLAPKYLSWLWQGFLLTLGLAAASALAATVGGLLLAVMRHARGTAVRTVAAGYVVAFR CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHEEEEEC NTPLLVQLLFWYFGVASLLPDTWITWLNARHELSAGPLTLAWPSFEFVAGWVGLSAYTAA CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHH FVAEECEAGLRGVRGAQHDAAAALGLTPMQSLRYVVLPQAVRIALPSLFGQYMNLVKNSS HHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC LAMAIGVAELSYASRQVETETFKTFAAFGVATVLYVAAVAAIEAGAYAATQWRDRLAAGR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCC >Mature Secondary Structure MLGLAPKYLSWLWQGFLLTLGLAAASALAATVGGLLLAVMRHARGTAVRTVAAGYVVAFR CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHEEEEEC NTPLLVQLLFWYFGVASLLPDTWITWLNARHELSAGPLTLAWPSFEFVAGWVGLSAYTAA CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHH FVAEECEAGLRGVRGAQHDAAAALGLTPMQSLRYVVLPQAVRIALPSLFGQYMNLVKNSS HHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC LAMAIGVAELSYASRQVETETFKTFAAFGVATVLYVAAVAAIEAGAYAATQWRDRLAAGR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; L-glutamate [Periplasm]; H2O [C]
Specific reaction: ATP + L-glutamate [Periplasm] + H2O = ADP + phosphate + L-glutamate [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 12471157 [H]