| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is aarA [H]
Identifier: 115351567
GI number: 115351567
Start: 1661576
End: 1663495
Strand: Direct
Name: aarA [H]
Synonym: Bamb_1514
Alternate gene names: 115351567
Gene position: 1661576-1663495 (Clockwise)
Preceding gene: 115351566
Following gene: 115351568
Centisome position: 46.72
GC content: 67.66
Gene sequence:
>1920_bases ATGAGAGAACAACATTCTTCCAGGCCGTGGTTGACCATTCTGCTGGCCGTCGTCAATACCGTGATATTCGTGCTGATGTG GCGACAGGCGTCGTACGGTTCGCTGTCCAACCCGCTGCTGCTCGACTGGGGCGCGAACTTCGCGCCGTACACGCTCACCG GGCAGCCGTGGCGGCTGCTGACCAGCGCGTTCCTGCACGGCAGCTGGGTCCATCTCGCGCTGAACATGTACATGCTGGTG GTGCTCGGCACCGTGCTCGAACGCGCGGGCGGCACGCTGCGGTTCGGCGTCGCGTATCTTTTGTCCGCGCTCGGCGGCTC GCTGCTGAGCGCGCTCTGGCATGGCTATCACGAAGTCGGCAGCACCACCTTTGCGTTCGGCGTCGCGCTGGCGTCCAGCG GGATCCGGCCGGTCGTGAGTGTCGGTGCGTCGGGCGCACTGATGGGACTGGCGGGCGCGGCCGCGGCATTCGCGCTGCAA CGCCGACGCGACAGCGCAGGCGATGCGCCGGTTGCCATCAACCTCGGCGCGCTCGGGCAAGTGATCGCGATCAACCTGGG CTCGGGCTTCCTCATCTCCGGCATCGATCAGGCCGCGCATCTCGGCGGTGTGGTCGTCGGCTTCATCGCCGGTTGGCTGA TGTACGGGGCCGGCCGCTCGATGCGCGTCGCCGTGCCGCTCGTGTTCGCGGTGCTCGGCAGCGCGGCGATGTTGTTCGCC GCGCAGCGGGCCGGCAGCGAGGAACTGCAAGGCTGGCGTGACGCGACCCGCCGCGACGTCGAGCGCGACGCCGCGAAGCG CCACGCGCAACAGCAGGCGGCCGCGATTGCCGAGCAGATCCGCGACGACGAGCAACACCGTCCGGCGCCCGTGTCGGCCG AGCAGGCGGCAGGCACCGTCGTACCCGTCGGCAAGTGGCCATACGCGATGGTGCTGGGCGCATCGGGCAAACGCCTGTAC GTGACCGACAACGACCGGAACACGCTCGTCGTCGTCGACGTCGAGCGGCACGAGGTCGTGCGCACGATCACAGGCGAGCC GTTCGCGACGGGGCTCGACGGCTGCCCGGGGAACATGTGCCGCGGCCGCGGCGCGAGCGGCGTGTACGTGAGCCCCGACG AGCGCTACGCGTATGTTGCGTCGATGCGCGAGAACGGCCTCGCGCGCATCGACCTGAACAGCGGTGCGATCGTCGATGGC GTGACGCTCGGACGCTTTCCGCGCGCAATCGTTGCGTCCGCATCCAACGATAGGCTGTACGTGCTGAACAGCGTCGACGA CACGATTTCGGTCGTCAGTCTCGCGCACTGGCCGCAGGTCATCGCGACGCTGCGGCTCGGCGATCACGATGCATCGGGCG TCGAGTTCGGCCGTGCGCTGTCGATGTGGCTGTCGCCCGACGACCGGCGGCTGTATGCATACGCGATGCAGAAGGGCGCG ATCGTCGCGTTCGATACGGCGACGAACGCGCAGGTAGAGACCTATCCGGTCGATGCGGATTTCATCCAGGCTCAGCCTGG CGAGAAGGGCGCGGGCATCTGGGTCTACAACAAGTCGTCGGTTCAGTGGCGGGATGCGTCGAGCCTTGCCGTACGCGACA GTTATCCGGTCTGCCAGGAGTCGATGCACAGCTTCGACGGCAGCGGTGACGGCTCGCTGATCGCCGTGACCGGCTATGAC GACAAGCCGATGCGCGTGATCAAGACCGCCACGCGTCGTACCGTCGGCGAGTTTCCGGTCGCGGGCGGCGTGTCGCAGGT GATCTTCGCGCCGGATCACAAGACGCTGTTCGCGCTCGGCGCAGCCGGCACGCTGTCGTTCCTGCGCATGGACCGTTCGC TCGATTACCTGCAGGACGGCGGTGACGGCGAGTTCCTGTGCGCGGCGTCCGTGGCCGCCACCGACGACGATAGCGAATGA
Upstream 100 bases:
>100_bases CGGTTCGCCGATCGGCCTCGTCACACGCTCGTTGCTTGCGGGACGCGAAATATAATGGCGCTCGCGCGGCTCACGCGCGA TAACCCATACCAAGATCCCG
Downstream 100 bases:
>100_bases CCGCGAGCGCGGGTGCGCGTCATCACAAAACCCGCAGAGCAAAGCACCATTTGTTGGTTCGAAATCGCCGCACGCGCTGA TACGTTAGCGGCTTCGCGAC
Product: rhomboid family protein
Products: NA
Alternate protein names: Intramembrane serine protease [H]
Number of amino acids: Translated: 639; Mature: 639
Protein sequence:
>639_residues MREQHSSRPWLTILLAVVNTVIFVLMWRQASYGSLSNPLLLDWGANFAPYTLTGQPWRLLTSAFLHGSWVHLALNMYMLV VLGTVLERAGGTLRFGVAYLLSALGGSLLSALWHGYHEVGSTTFAFGVALASSGIRPVVSVGASGALMGLAGAAAAFALQ RRRDSAGDAPVAINLGALGQVIAINLGSGFLISGIDQAAHLGGVVVGFIAGWLMYGAGRSMRVAVPLVFAVLGSAAMLFA AQRAGSEELQGWRDATRRDVERDAAKRHAQQQAAAIAEQIRDDEQHRPAPVSAEQAAGTVVPVGKWPYAMVLGASGKRLY VTDNDRNTLVVVDVERHEVVRTITGEPFATGLDGCPGNMCRGRGASGVYVSPDERYAYVASMRENGLARIDLNSGAIVDG VTLGRFPRAIVASASNDRLYVLNSVDDTISVVSLAHWPQVIATLRLGDHDASGVEFGRALSMWLSPDDRRLYAYAMQKGA IVAFDTATNAQVETYPVDADFIQAQPGEKGAGIWVYNKSSVQWRDASSLAVRDSYPVCQESMHSFDGSGDGSLIAVTGYD DKPMRVIKTATRRTVGEFPVAGGVSQVIFAPDHKTLFALGAAGTLSFLRMDRSLDYLQDGGDGEFLCAASVAATDDDSE
Sequences:
>Translated_639_residues MREQHSSRPWLTILLAVVNTVIFVLMWRQASYGSLSNPLLLDWGANFAPYTLTGQPWRLLTSAFLHGSWVHLALNMYMLV VLGTVLERAGGTLRFGVAYLLSALGGSLLSALWHGYHEVGSTTFAFGVALASSGIRPVVSVGASGALMGLAGAAAAFALQ RRRDSAGDAPVAINLGALGQVIAINLGSGFLISGIDQAAHLGGVVVGFIAGWLMYGAGRSMRVAVPLVFAVLGSAAMLFA AQRAGSEELQGWRDATRRDVERDAAKRHAQQQAAAIAEQIRDDEQHRPAPVSAEQAAGTVVPVGKWPYAMVLGASGKRLY VTDNDRNTLVVVDVERHEVVRTITGEPFATGLDGCPGNMCRGRGASGVYVSPDERYAYVASMRENGLARIDLNSGAIVDG VTLGRFPRAIVASASNDRLYVLNSVDDTISVVSLAHWPQVIATLRLGDHDASGVEFGRALSMWLSPDDRRLYAYAMQKGA IVAFDTATNAQVETYPVDADFIQAQPGEKGAGIWVYNKSSVQWRDASSLAVRDSYPVCQESMHSFDGSGDGSLIAVTGYD DKPMRVIKTATRRTVGEFPVAGGVSQVIFAPDHKTLFALGAAGTLSFLRMDRSLDYLQDGGDGEFLCAASVAATDDDSE >Mature_639_residues MREQHSSRPWLTILLAVVNTVIFVLMWRQASYGSLSNPLLLDWGANFAPYTLTGQPWRLLTSAFLHGSWVHLALNMYMLV VLGTVLERAGGTLRFGVAYLLSALGGSLLSALWHGYHEVGSTTFAFGVALASSGIRPVVSVGASGALMGLAGAAAAFALQ RRRDSAGDAPVAINLGALGQVIAINLGSGFLISGIDQAAHLGGVVVGFIAGWLMYGAGRSMRVAVPLVFAVLGSAAMLFA AQRAGSEELQGWRDATRRDVERDAAKRHAQQQAAAIAEQIRDDEQHRPAPVSAEQAAGTVVPVGKWPYAMVLGASGKRLY VTDNDRNTLVVVDVERHEVVRTITGEPFATGLDGCPGNMCRGRGASGVYVSPDERYAYVASMRENGLARIDLNSGAIVDG VTLGRFPRAIVASASNDRLYVLNSVDDTISVVSLAHWPQVIATLRLGDHDASGVEFGRALSMWLSPDDRRLYAYAMQKGA IVAFDTATNAQVETYPVDADFIQAQPGEKGAGIWVYNKSSVQWRDASSLAVRDSYPVCQESMHSFDGSGDGSLIAVTGYD DKPMRVIKTATRRTVGEFPVAGGVSQVIFAPDHKTLFALGAAGTLSFLRMDRSLDYLQDGGDGEFLCAASVAATDDDSE
Specific function: Rhomboid serine protease that catalyzes intramembrane proteolysis. Mediates quorum-sensing and the subsequent regulation of target genes via activation of the Tat protein export system. Catalyzes the proteolytic activation of tatA by removal of its N- ter
COG id: COG0705
COG function: function code R; Uncharacterized membrane protein (homolog of Drosophila rhomboid)
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase S54 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002610 - InterPro: IPR022764 [H]
Pfam domain/function: PF01694 Rhomboid [H]
EC number: =3.4.21.105 [H]
Molecular weight: Translated: 68048; Mature: 68048
Theoretical pI: Translated: 6.20; Mature: 6.20
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MREQHSSRPWLTILLAVVNTVIFVLMWRQASYGSLSNPLLLDWGANFAPYTLTGQPWRLL CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCEEECCCCHHHH TSAFLHGSWVHLALNMYMLVVLGTVLERAGGTLRFGVAYLLSALGGSLLSALWHGYHEVG HHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHC STTFAFGVALASSGIRPVVSVGASGALMGLAGAAAAFALQRRRDSAGDAPVAINLGALGQ CHHHHHHHHHHCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCE VIAINLGSGFLISGIDQAAHLGGVVVGFIAGWLMYGAGRSMRVAVPLVFAVLGSAAMLFA EEEEECCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHH AQRAGSEELQGWRDATRRDVERDAAKRHAQQQAAAIAEQIRDDEQHRPAPVSAEQAAGTV HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCHHHCCCCE VPVGKWPYAMVLGASGKRLYVTDNDRNTLVVVDVERHEVVRTITGEPFATGLDGCPGNMC EECCCCCEEEEECCCCCEEEEEECCCCEEEEEECHHHHHHHHHCCCCCCCCCCCCCCCCC RGRGASGVYVSPDERYAYVASMRENGLARIDLNSGAIVDGVTLGRFPRAIVASASNDRLY CCCCCCCCEECCCCCEEEEEHHHHCCEEEEECCCCCEECCEECCCCCHHHEECCCCCEEE VLNSVDDTISVVSLAHWPQVIATLRLGDHDASGVEFGRALSMWLSPDDRRLYAYAMQKGA EEECCCCHHHHHHHHHHHHHHHEEECCCCCCCCHHHHHHHEEEECCCCCEEEEEEECCCC IVAFDTATNAQVETYPVDADFIQAQPGEKGAGIWVYNKSSVQWRDASSLAVRDSYPVCQE EEEEECCCCCEEEEEECCCHHEECCCCCCCCEEEEECCCCCEECCCCCEEEECCCCHHHH SMHSFDGSGDGSLIAVTGYDDKPMRVIKTATRRTVGEFPVAGGVSQVIFAPDHKTLFALG HHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCEEEEEC AAGTLSFLRMDRSLDYLQDGGDGEFLCAASVAATDDDSE CCHHHHHHHHHCCHHHHHCCCCCCEEEEEEEECCCCCCC >Mature Secondary Structure MREQHSSRPWLTILLAVVNTVIFVLMWRQASYGSLSNPLLLDWGANFAPYTLTGQPWRLL CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCEEECCCCHHHH TSAFLHGSWVHLALNMYMLVVLGTVLERAGGTLRFGVAYLLSALGGSLLSALWHGYHEVG HHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHC STTFAFGVALASSGIRPVVSVGASGALMGLAGAAAAFALQRRRDSAGDAPVAINLGALGQ CHHHHHHHHHHCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCE VIAINLGSGFLISGIDQAAHLGGVVVGFIAGWLMYGAGRSMRVAVPLVFAVLGSAAMLFA EEEEECCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHH AQRAGSEELQGWRDATRRDVERDAAKRHAQQQAAAIAEQIRDDEQHRPAPVSAEQAAGTV HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCHHHCCCCE VPVGKWPYAMVLGASGKRLYVTDNDRNTLVVVDVERHEVVRTITGEPFATGLDGCPGNMC EECCCCCEEEEECCCCCEEEEEECCCCEEEEEECHHHHHHHHHCCCCCCCCCCCCCCCCC RGRGASGVYVSPDERYAYVASMRENGLARIDLNSGAIVDGVTLGRFPRAIVASASNDRLY CCCCCCCCEECCCCCEEEEEHHHHCCEEEEECCCCCEECCEECCCCCHHHEECCCCCEEE VLNSVDDTISVVSLAHWPQVIATLRLGDHDASGVEFGRALSMWLSPDDRRLYAYAMQKGA EEECCCCHHHHHHHHHHHHHHHEEECCCCCCCCHHHHHHHEEEECCCCCEEEEEEECCCC IVAFDTATNAQVETYPVDADFIQAQPGEKGAGIWVYNKSSVQWRDASSLAVRDSYPVCQE EEEEECCCCCEEEEEECCCHHEECCCCCCCCEEEEECCCCCEECCCCCEEEECCCCHHHH SMHSFDGSGDGSLIAVTGYDDKPMRVIKTATRRTVGEFPVAGGVSQVIFAPDHKTLFALG HHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCEEEEEC AAGTLSFLRMDRSLDYLQDGGDGEFLCAASVAATDDDSE CCHHHHHHHHHCCHHHHHCCCCCCEEEEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8051030 [H]