| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is glnH [H]
Identifier: 115351568
GI number: 115351568
Start: 1663676
End: 1664491
Strand: Direct
Name: glnH [H]
Synonym: Bamb_1515
Alternate gene names: 115351568
Gene position: 1663676-1664491 (Clockwise)
Preceding gene: 115351567
Following gene: 115351569
Centisome position: 46.78
GC content: 64.95
Gene sequence:
>816_bases ATGAAAATCCACACTCTCGCCACGTGGCTCGTCGGGGCCGCACTCGTCACGGCAGGCACGGTCGCGCACGCGGACCGGCT CGACGACATCAGGAAGGCCGGCGTGCTGCGCGTCGCGACCTTCGACAGCAATCCGCCGTTCGGCTATGTCGACGCCAAGA GCAATCACATCGTCGGCCTCGACGTCGATTACGCGAAGGCGCTCGCCGACAAGCTCGGCGTAAAGTTGCAACTGCAACCG ACCAATCCCGCGAACCGCATTCCGTTCCTGACGTCCGGCAAGGTCGACCTCGTGCTTGCGAACTTCACGATCACCGACGA GCGCGCGAAGCAGGTCGACTTCAGCATCCCGTACTTCTCGTCGGGCCAGCAGTTTCTCGCGAAGAAGGGCGTGCTGAAAT CGGCCGACCAGTTGAACGGCCTGCGCGTCGGCGCGGACAAGGGCACGACGAACGAGATCACGCTGCGCGAGAAGTATCCG AAGGCGACGATCGTCGCGTACGACGACACGCCGTTCGCGTTCGCCGCGCTGCGTGCCGGCAACGTGCAGGCGATCACGCA GGACGGACCGAAACTGATCGGCCTGCTCGCGAACGTGCCCGACAAGCAGAACTACGAGATTCCGGCGTTCACGATCTCGA ACGACTACATGGGCGTCGGCGTGCCGAAGGGCGAGACGCGCCTGCTCGGCTTCGTGAACGACACGCTGAAGGGGCTCGAG GCGAACGGCCGCGCGGGACAGATCTACGACGCGTGGTTCGGGCCGGCGACGAAGACGCCGCTCACGCGCATCTTCCGGAT CGGCGACCGGACCTGA
Upstream 100 bases:
>100_bases TACGTTAGCGGCTTCGCGACGACACACCACGTCGCGATGTTCCTCGAACCGGGCCGCCGCGCGATCCGCGGCGGCCTTCA TAACAAATCAGGTCGTGCTC
Downstream 100 bases:
>100_bases GTCGCGCGCCGCGCCGCATGCGCCGCGATCCGCCGCCGGCTGTGCCGGGATGCGCGGGTCGCGGCGCTTTGCGCTTGCTT CCATCTTCTTTCGCATTTTT
Product: extracellular solute-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 271; Mature: 271
Protein sequence:
>271_residues MKIHTLATWLVGAALVTAGTVAHADRLDDIRKAGVLRVATFDSNPPFGYVDAKSNHIVGLDVDYAKALADKLGVKLQLQP TNPANRIPFLTSGKVDLVLANFTITDERAKQVDFSIPYFSSGQQFLAKKGVLKSADQLNGLRVGADKGTTNEITLREKYP KATIVAYDDTPFAFAALRAGNVQAITQDGPKLIGLLANVPDKQNYEIPAFTISNDYMGVGVPKGETRLLGFVNDTLKGLE ANGRAGQIYDAWFGPATKTPLTRIFRIGDRT
Sequences:
>Translated_271_residues MKIHTLATWLVGAALVTAGTVAHADRLDDIRKAGVLRVATFDSNPPFGYVDAKSNHIVGLDVDYAKALADKLGVKLQLQP TNPANRIPFLTSGKVDLVLANFTITDERAKQVDFSIPYFSSGQQFLAKKGVLKSADQLNGLRVGADKGTTNEITLREKYP KATIVAYDDTPFAFAALRAGNVQAITQDGPKLIGLLANVPDKQNYEIPAFTISNDYMGVGVPKGETRLLGFVNDTLKGLE ANGRAGQIYDAWFGPATKTPLTRIFRIGDRT >Mature_271_residues MKIHTLATWLVGAALVTAGTVAHADRLDDIRKAGVLRVATFDSNPPFGYVDAKSNHIVGLDVDYAKALADKLGVKLQLQP TNPANRIPFLTSGKVDLVLANFTITDERAKQVDFSIPYFSSGQQFLAKKGVLKSADQLNGLRVGADKGTTNEITLREKYP KATIVAYDDTPFAFAALRAGNVQAITQDGPKLIGLLANVPDKQNYEIPAFTISNDYMGVGVPKGETRLLGFVNDTLKGLE ANGRAGQIYDAWFGPATKTPLTRIFRIGDRT
Specific function: Part of the ABC transporter complex glnHMPQ involved in glutamine transport [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Lipid-anchor (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 3 family [H]
Homologues:
Organism=Escherichia coli, GI1788228, Length=251, Percent_Identity=34.2629482071713, Blast_Score=126, Evalue=2e-30, Organism=Escherichia coli, GI1787088, Length=235, Percent_Identity=33.6170212765957, Blast_Score=115, Evalue=3e-27, Organism=Escherichia coli, GI1787085, Length=219, Percent_Identity=30.5936073059361, Blast_Score=102, Evalue=4e-23, Organism=Escherichia coli, GI1787031, Length=230, Percent_Identity=32.6086956521739, Blast_Score=96, Evalue=2e-21, Organism=Escherichia coli, GI1786876, Length=257, Percent_Identity=29.9610894941634, Blast_Score=95, Evalue=5e-21, Organism=Escherichia coli, GI1788649, Length=227, Percent_Identity=25.1101321585903, Blast_Score=78, Evalue=6e-16, Organism=Escherichia coli, GI1788648, Length=228, Percent_Identity=23.6842105263158, Blast_Score=67, Evalue=1e-12,
Paralogues:
None
Copy number: 1920 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1060 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 80 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015683 - InterPro: IPR001638 - InterPro: IPR018313 [H]
Pfam domain/function: PF00497 SBP_bac_3 [H]
EC number: NA
Molecular weight: Translated: 29294; Mature: 29294
Theoretical pI: Translated: 9.75; Mature: 9.75
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 0.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 0.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKIHTLATWLVGAALVTAGTVAHADRLDDIRKAGVLRVATFDSNPPFGYVDAKSNHIVGL CEEHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCEEEEEEECCCCCEEEEECCCCEEEEE DVDYAKALADKLGVKLQLQPTNPANRIPFLTSGKVDLVLANFTITDERAKQVDFSIPYFS CHHHHHHHHHHHCCEEEEECCCCCCCCCEEECCCEEEEEEEEEECCCHHHEEEEECCCCC SGQQFLAKKGVLKSADQLNGLRVGADKGTTNEITLREKYPKATIVAYDDTPFAFAALRAG CCHHHHHHHCHHHCHHHCCCEEEECCCCCCCEEEEEECCCCEEEEEECCCCEEEEEEECC NVQAITQDGPKLIGLLANVPDKQNYEIPAFTISNDYMGVGVPKGETRLLGFVNDTLKGLE CEEEEECCCCEEEHHHHCCCCCCCCCCCEEEECCCEEEECCCCCCEEEEEEHHHHHHCCC ANGRAGQIYDAWFGPATKTPLTRIFRIGDRT CCCCCCEEEEEECCCCCCCHHHHHEECCCCC >Mature Secondary Structure MKIHTLATWLVGAALVTAGTVAHADRLDDIRKAGVLRVATFDSNPPFGYVDAKSNHIVGL CEEHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCEEEEEEECCCCCEEEEECCCCEEEEE DVDYAKALADKLGVKLQLQPTNPANRIPFLTSGKVDLVLANFTITDERAKQVDFSIPYFS CHHHHHHHHHHHCCEEEEECCCCCCCCCEEECCCEEEEEEEEEECCCHHHEEEEECCCCC SGQQFLAKKGVLKSADQLNGLRVGADKGTTNEITLREKYPKATIVAYDDTPFAFAALRAG CCHHHHHHHCHHHCHHHCCCEEEECCCCCCCEEEEEECCCCEEEEEECCCCEEEEEEECC NVQAITQDGPKLIGLLANVPDKQNYEIPAFTISNDYMGVGVPKGETRLLGFVNDTLKGLE CEEEEECCCCEEEHHHHCCCCCCCCCCCEEEECCCEEEECCCCCCEEEEEEHHHHHHCCC ANGRAGQIYDAWFGPATKTPLTRIFRIGDRT CCCCCCEEEEEECCCCCCCHHHHHEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 7551042; 9384377 [H]