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The map label for this gene is yhcM [H]

Identifier: 115351446

GI number: 115351446

Start: 1535823

End: 1536920

Strand: Direct

Name: yhcM [H]

Synonym: Bamb_1393

Alternate gene names: 115351446

Gene position: 1535823-1536920 (Clockwise)

Preceding gene: 115351445

Following gene: 115351447

Centisome position: 43.18

GC content: 63.48

Gene sequence:

>1098_bases
ATGAACGTCACCGAATACTACACGCGCGAATTGACCACGCGCGGCTATCAGTCCGATCCCGCGCAGCGCGCGGCCGTCGA
CCGCCTGCAGCACTGCTTCGACGAGTGGGTCGACTACAAGGCGCGCCGCTCGAACGCGTTCAAGAAGCTCATCAATCATC
CGGACCTGCCGCGTGGTGTCTACATGTGGGGCGGCGTCGGCCGCGGCAAGAGCTTCCTGATGGACAGCTTTTACGCGGTG
GTGCCCGTGCAGCGCAAGACGCGCCTGCACTTCCACGAATTCATGCGCGAAGTGCACCGCGAACTCGAGGAGCTGAAAGG
GCAGGCCGATCCGCTCGACGAACTCGCGCGACGCATCGCGAAGCGCTACCGGCTGATCTGCTTCGACGAATTCCACGTGT
CGGACATCGCGGACGCGATGATCCTGTACCGGCTGCTCGATCGCCTGTTCAACAACGGCGTGCAGTTCGTGATGACGTCC
AACTACGATCCCGACGACCTGTATCCCGATGGCCTGCATCGCGACCGCATGCTGCCGGCGATCGCGCTGATCAAGGAAAA
GCTCGCCGTGCTGAACGTCGACGCGGGCGTCGACTATCGCCAGCGCACGCTCGCGCAGGTGCGGATGTATCACACGCCGC
TCGGCGCGGACGCCGATCGCGAACTGCGTCATGCATTCGCGAAGCTCGCCGCGGTGCCCGACGAAAGCCCGATCCTGCAT
ATCGAGAAGCGTGAACTGAAGGCGTTGCGCAAGGCCGACGGGGTCGTCTGGTTCGATTTCGCGACGCTCTGCGGCGGCCC
GCGTTCGCAGAACGACTATCTCGAGCTGGCGAGCCGTTTTCACGCGATCGTGCTGTCCGAAGTGCCGCAGATGTCGCCGC
GCATGGCATCGGAGGCGCGGCGCTTCACGTGGCTCATCGACGTGCTGTACGACCACAAGGTCAAGCTGCTGATGTCGGCG
GCGGTGCCGGCGGAGCAACTGTACATCGAAGGGCCGATGGCGAACGAGTTCGCGCGCACGGTGTCGCGGATCGTCGAGAT
GCAGTCGAAGGAATACATTGAAACGCCGCGTCGCATCGTCGATACTTCGCTGACCTGA

Upstream 100 bases:

>100_bases
AGTGCGGTATAGCGGCGGCCGGCCTTTGGTCGGCGTAGCCGTCTCATGACGAAGGCGGGCGGGAGTTTCCCGCTCGCCTT
CGTTTTTTCCGGTTTGCCCG

Downstream 100 bases:

>100_bases
GCGTAGTTTTCGATAAATGACGGGCTTTAAACGTCAATTCCGGTCAAATTATCGCGATCCCCGGGTATTTTCGGACTTGT
CTTATATTCATCGTTGAAGT

Product: AFG1 family ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 365; Mature: 365

Protein sequence:

>365_residues
MNVTEYYTRELTTRGYQSDPAQRAAVDRLQHCFDEWVDYKARRSNAFKKLINHPDLPRGVYMWGGVGRGKSFLMDSFYAV
VPVQRKTRLHFHEFMREVHRELEELKGQADPLDELARRIAKRYRLICFDEFHVSDIADAMILYRLLDRLFNNGVQFVMTS
NYDPDDLYPDGLHRDRMLPAIALIKEKLAVLNVDAGVDYRQRTLAQVRMYHTPLGADADRELRHAFAKLAAVPDESPILH
IEKRELKALRKADGVVWFDFATLCGGPRSQNDYLELASRFHAIVLSEVPQMSPRMASEARRFTWLIDVLYDHKVKLLMSA
AVPAEQLYIEGPMANEFARTVSRIVEMQSKEYIETPRRIVDTSLT

Sequences:

>Translated_365_residues
MNVTEYYTRELTTRGYQSDPAQRAAVDRLQHCFDEWVDYKARRSNAFKKLINHPDLPRGVYMWGGVGRGKSFLMDSFYAV
VPVQRKTRLHFHEFMREVHRELEELKGQADPLDELARRIAKRYRLICFDEFHVSDIADAMILYRLLDRLFNNGVQFVMTS
NYDPDDLYPDGLHRDRMLPAIALIKEKLAVLNVDAGVDYRQRTLAQVRMYHTPLGADADRELRHAFAKLAAVPDESPILH
IEKRELKALRKADGVVWFDFATLCGGPRSQNDYLELASRFHAIVLSEVPQMSPRMASEARRFTWLIDVLYDHKVKLLMSA
AVPAEQLYIEGPMANEFARTVSRIVEMQSKEYIETPRRIVDTSLT
>Mature_365_residues
MNVTEYYTRELTTRGYQSDPAQRAAVDRLQHCFDEWVDYKARRSNAFKKLINHPDLPRGVYMWGGVGRGKSFLMDSFYAV
VPVQRKTRLHFHEFMREVHRELEELKGQADPLDELARRIAKRYRLICFDEFHVSDIADAMILYRLLDRLFNNGVQFVMTS
NYDPDDLYPDGLHRDRMLPAIALIKEKLAVLNVDAGVDYRQRTLAQVRMYHTPLGADADRELRHAFAKLAAVPDESPILH
IEKRELKALRKADGVVWFDFATLCGGPRSQNDYLELASRFHAIVLSEVPQMSPRMASEARRFTWLIDVLYDHKVKLLMSA
AVPAEQLYIEGPMANEFARTVSRIVEMQSKEYIETPRRIVDTSLT

Specific function: Unknown

COG id: COG1485

COG function: function code R; Predicted ATPase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AFG1 ATPase family [H]

Homologues:

Organism=Homo sapiens, GI21918872, Length=385, Percent_Identity=36.1038961038961, Blast_Score=232, Evalue=4e-61,
Organism=Escherichia coli, GI1789627, Length=363, Percent_Identity=43.801652892562, Blast_Score=287, Evalue=8e-79,
Organism=Caenorhabditis elegans, GI17505769, Length=343, Percent_Identity=34.9854227405248, Blast_Score=206, Evalue=1e-53,
Organism=Saccharomyces cerevisiae, GI6320783, Length=317, Percent_Identity=35.0157728706625, Blast_Score=174, Evalue=2e-44,
Organism=Drosophila melanogaster, GI20129913, Length=349, Percent_Identity=34.0974212034384, Blast_Score=189, Evalue=4e-48,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005654 [H]

Pfam domain/function: PF03969 AFG1_ATPase [H]

EC number: NA

Molecular weight: Translated: 42355; Mature: 42355

Theoretical pI: Translated: 7.74; Mature: 7.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVTEYYTRELTTRGYQSDPAQRAAVDRLQHCFDEWVDYKARRSNAFKKLINHPDLPRGV
CCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCE
YMWGGVGRGKSFLMDSFYAVVPVQRKTRLHFHEFMREVHRELEELKGQADPLDELARRIA
EEECCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
KRYRLICFDEFHVSDIADAMILYRLLDRLFNNGVQFVMTSNYDPDDLYPDGLHRDRMLPA
HHHHHHEEEHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHH
IALIKEKLAVLNVDAGVDYRQRTLAQVRMYHTPLGADADRELRHAFAKLAAVPDESPILH
HHHHHHHHHHEECCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEE
IEKRELKALRKADGVVWFDFATLCGGPRSQNDYLELASRFHAIVLSEVPQMSPRMASEAR
ECHHHHHHHHHHCCEEEEEHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
RFTWLIDVLYDHKVKLLMSAAVPAEQLYIEGPMANEFARTVSRIVEMQSKEYIETPRRIV
HHHHHHHHHHHHHHHHHHHHCCCHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
DTSLT
HCCCC
>Mature Secondary Structure
MNVTEYYTRELTTRGYQSDPAQRAAVDRLQHCFDEWVDYKARRSNAFKKLINHPDLPRGV
CCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCE
YMWGGVGRGKSFLMDSFYAVVPVQRKTRLHFHEFMREVHRELEELKGQADPLDELARRIA
EEECCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
KRYRLICFDEFHVSDIADAMILYRLLDRLFNNGVQFVMTSNYDPDDLYPDGLHRDRMLPA
HHHHHHEEEHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHH
IALIKEKLAVLNVDAGVDYRQRTLAQVRMYHTPLGADADRELRHAFAKLAAVPDESPILH
HHHHHHHHHHEECCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEE
IEKRELKALRKADGVVWFDFATLCGGPRSQNDYLELASRFHAIVLSEVPQMSPRMASEAR
ECHHHHHHHHHHCCEEEEEHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
RFTWLIDVLYDHKVKLLMSAAVPAEQLYIEGPMANEFARTVSRIVEMQSKEYIETPRRIV
HHHHHHHHHHHHHHHHHHHHCCCHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
DTSLT
HCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]