| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
Click here to switch to the map view.
The map label for this gene is yjjL [H]
Identifier: 115351397
GI number: 115351397
Start: 1477751
End: 1479070
Strand: Direct
Name: yjjL [H]
Synonym: Bamb_1344
Alternate gene names: 115351397
Gene position: 1477751-1479070 (Clockwise)
Preceding gene: 115351396
Following gene: 115351398
Centisome position: 41.55
GC content: 68.41
Gene sequence:
>1320_bases ATGAACGAGAATCATGCAGTTCCGACGGCGCCCCCACGCATCCGGCGCGGACAACGTATCGCGCTCGCGCTGCTGATGGT GAGCGGGATCGTCAACTATCTCGACCGCGGCACGCTGGCCGTCGCGAGTTCGGCCATCCGGAACGATCTGGGTCTGTCGC TCTCCGAAATGGGCTTGCTGCTGTCGGCATTTTCGTGGAGCTATGCGTTATGCCAGTTCCCGGTCGGCGGACTCGTCGAT CGCATCGGGCCGCGCCGTTTGCTGGGCGTCGGGCTGATCGTCTGGTCGCTCGCGCAGGCGTCGGGCGGCATCGTCTCCAC CTTCGGCTGGTTCATCGTCGCGCGTATCGTGCTCGGCATCGGCGAGGCGCCGCAGTTCCCGTCGGCGGCGCGGGTCGTGA GCAACTGGTTTCCGCTGCGCGCGCGCGGGACGCCGACCGGCATCTTCAACGCGGCATCGCCGCTCGGCACCGCGCTCGCG CCGTTGCTGCTGGCGGTGCTCGTCGCGTCGTTCAACTGGCGCTGGGCGTTCGTCGCGACCGGGGCGCTCGGCCTCGTCGT CGCCGTCGTCTGGTTCGCCCTGTACCGCGATCCGGCGCGTGCGCAACTGACGGCAGCCGAACGTGCGTATCTCGACGCCG ATGCGCAGACCGCCGTCGCGATGCCGAAGCTGACCTTCGCCGACTGGCGCAGCCTGTTCTCGCACGGCACGACCTGGGGC ATGCTGATCGGATTCTTCGGTTCCGTGTATCTGAACTGGGTCTACCTGACCTGGTTGCCGGGGTACCTGACGATGGAGCG TCACATGAGCCTCATTCGCACCGGGTTCGCGGCGTCGGTGCCGTTCCTGTGCGGATTCGTCGGCTCGCTGGTCGCCGGCT GGCTGTCGGATGTGGTCACGCGCCGCAGCCGCTCGCCGGTCGTGAGCCGGCGCAACGCGGTGGTCGTCGCGATGCTCGGG ATGGTCGCATTCACGATTCCGGCCGCGCTCGTGCAGAGCAACACGGTCGCGCTCGCGTGCATTTCGGTGGTGATCTTTCT CGCCAATGCGGCATCGGCGTGTTCGTGGGCGCTCGCGACGGCGGCCGCGCCGCCGAGCCGCATCGCATCGCTCGGCGCGA TCCAGAATTTCGGCGGTTTCATCGGCGGGGCGCTCGCGCCTATCCTGACGGGTGTGATCGCGCAGAAGTGGTCGTTCGTG CCCGCGCTGCTGACGGCGGCGGCAATCGCATTCGCCGGTGCGATGGCCTACCTGCTGCTGGTTCGCAAGCCGATTCCCGA GCAGGCCGCGAGCACCGCGTCCGGCGCGCTGCCCGCCTGA
Upstream 100 bases:
>100_bases TCCGACACGCGAAGAAGTGGAGCGTGCGGCCGTATAGATTCCGCGACGACGGAACGGGCAGCAGCCCGGCCAACCATTCA GGACAATGGAGACAGACGCA
Downstream 100 bases:
>100_bases GCGCCGCGCCTCCATCACGCATTCAAGAAAGCAAGGAAAGGAGAAACAGATGCAACACCATCAGCAGTCGAGCGCGACCA TCGAGGGGATCGTACCGGTG
Product: major facilitator transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 439; Mature: 439
Protein sequence:
>439_residues MNENHAVPTAPPRIRRGQRIALALLMVSGIVNYLDRGTLAVASSAIRNDLGLSLSEMGLLLSAFSWSYALCQFPVGGLVD RIGPRRLLGVGLIVWSLAQASGGIVSTFGWFIVARIVLGIGEAPQFPSAARVVSNWFPLRARGTPTGIFNAASPLGTALA PLLLAVLVASFNWRWAFVATGALGLVVAVVWFALYRDPARAQLTAAERAYLDADAQTAVAMPKLTFADWRSLFSHGTTWG MLIGFFGSVYLNWVYLTWLPGYLTMERHMSLIRTGFAASVPFLCGFVGSLVAGWLSDVVTRRSRSPVVSRRNAVVVAMLG MVAFTIPAALVQSNTVALACISVVIFLANAASACSWALATAAAPPSRIASLGAIQNFGGFIGGALAPILTGVIAQKWSFV PALLTAAAIAFAGAMAYLLLVRKPIPEQAASTASGALPA
Sequences:
>Translated_439_residues MNENHAVPTAPPRIRRGQRIALALLMVSGIVNYLDRGTLAVASSAIRNDLGLSLSEMGLLLSAFSWSYALCQFPVGGLVD RIGPRRLLGVGLIVWSLAQASGGIVSTFGWFIVARIVLGIGEAPQFPSAARVVSNWFPLRARGTPTGIFNAASPLGTALA PLLLAVLVASFNWRWAFVATGALGLVVAVVWFALYRDPARAQLTAAERAYLDADAQTAVAMPKLTFADWRSLFSHGTTWG MLIGFFGSVYLNWVYLTWLPGYLTMERHMSLIRTGFAASVPFLCGFVGSLVAGWLSDVVTRRSRSPVVSRRNAVVVAMLG MVAFTIPAALVQSNTVALACISVVIFLANAASACSWALATAAAPPSRIASLGAIQNFGGFIGGALAPILTGVIAQKWSFV PALLTAAAIAFAGAMAYLLLVRKPIPEQAASTASGALPA >Mature_439_residues MNENHAVPTAPPRIRRGQRIALALLMVSGIVNYLDRGTLAVASSAIRNDLGLSLSEMGLLLSAFSWSYALCQFPVGGLVD RIGPRRLLGVGLIVWSLAQASGGIVSTFGWFIVARIVLGIGEAPQFPSAARVVSNWFPLRARGTPTGIFNAASPLGTALA PLLLAVLVASFNWRWAFVATGALGLVVAVVWFALYRDPARAQLTAAERAYLDADAQTAVAMPKLTFADWRSLFSHGTTWG MLIGFFGSVYLNWVYLTWLPGYLTMERHMSLIRTGFAASVPFLCGFVGSLVAGWLSDVVTRRSRSPVVSRRNAVVVAMLG MVAFTIPAALVQSNTVALACISVVIFLANAASACSWALATAAAPPSRIASLGAIQNFGGFIGGALAPILTGVIAQKWSFV PALLTAAAIAFAGAMAYLLLVRKPIPEQAASTASGALPA
Specific function: Responsible for the transport of L-galactonate from the periplasm across the inner membrane (Probable). Is essential for growth on L-galactonate as the sole carbon source [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily. Phthalate permease family [H]
Homologues:
Organism=Homo sapiens, GI6912666, Length=392, Percent_Identity=22.7040816326531, Blast_Score=91, Evalue=2e-18, Organism=Homo sapiens, GI154800443, Length=443, Percent_Identity=23.9277652370203, Blast_Score=86, Evalue=5e-17, Organism=Homo sapiens, GI9966811, Length=428, Percent_Identity=22.6635514018692, Blast_Score=83, Evalue=5e-16, Organism=Homo sapiens, GI148743791, Length=266, Percent_Identity=22.5563909774436, Blast_Score=81, Evalue=2e-15, Organism=Homo sapiens, GI5031955, Length=318, Percent_Identity=21.6981132075472, Blast_Score=80, Evalue=5e-15, Organism=Homo sapiens, GI256219598, Length=395, Percent_Identity=24.3037974683544, Blast_Score=79, Evalue=7e-15, Organism=Homo sapiens, GI4503847, Length=395, Percent_Identity=24.3037974683544, Blast_Score=79, Evalue=7e-15, Organism=Homo sapiens, GI256219483, Length=395, Percent_Identity=24.3037974683544, Blast_Score=79, Evalue=7e-15, Organism=Homo sapiens, GI9945322, Length=442, Percent_Identity=23.5294117647059, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI4885441, Length=392, Percent_Identity=23.7244897959184, Blast_Score=74, Evalue=4e-13, Organism=Homo sapiens, GI154350196, Length=286, Percent_Identity=23.7762237762238, Blast_Score=73, Evalue=4e-13, Organism=Homo sapiens, GI256219543, Length=417, Percent_Identity=22.3021582733813, Blast_Score=71, Evalue=2e-12, Organism=Homo sapiens, GI185136021, Length=183, Percent_Identity=29.5081967213115, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI21322234, Length=375, Percent_Identity=22.1333333333333, Blast_Score=67, Evalue=4e-11, Organism=Escherichia coli, GI2367379, Length=416, Percent_Identity=42.7884615384615, Blast_Score=344, Evalue=6e-96, Organism=Escherichia coli, GI87082320, Length=424, Percent_Identity=32.5471698113208, Blast_Score=256, Evalue=2e-69, Organism=Escherichia coli, GI1789515, Length=426, Percent_Identity=31.6901408450704, Blast_Score=210, Evalue=1e-55, Organism=Escherichia coli, GI1789152, Length=439, Percent_Identity=31.2072892938497, Blast_Score=202, Evalue=4e-53, Organism=Escherichia coli, GI2367193, Length=432, Percent_Identity=23.6111111111111, Blast_Score=108, Evalue=5e-25, Organism=Escherichia coli, GI1788573, Length=364, Percent_Identity=26.6483516483516, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI87082071, Length=396, Percent_Identity=25.5050505050505, Blast_Score=82, Evalue=6e-17, Organism=Escherichia coli, GI87082310, Length=312, Percent_Identity=23.3974358974359, Blast_Score=72, Evalue=8e-14, Organism=Caenorhabditis elegans, GI25141316, Length=339, Percent_Identity=23.3038348082596, Blast_Score=85, Evalue=7e-17, Organism=Caenorhabditis elegans, GI25141318, Length=336, Percent_Identity=23.5119047619048, Blast_Score=84, Evalue=1e-16, Organism=Caenorhabditis elegans, GI25141341, Length=357, Percent_Identity=23.5294117647059, Blast_Score=84, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17535049, Length=436, Percent_Identity=24.5412844036697, Blast_Score=82, Evalue=6e-16, Organism=Caenorhabditis elegans, GI86561091, Length=290, Percent_Identity=23.7931034482759, Blast_Score=82, Evalue=8e-16, Organism=Caenorhabditis elegans, GI17560030, Length=367, Percent_Identity=23.433242506812, Blast_Score=81, Evalue=1e-15, Organism=Caenorhabditis elegans, GI193205400, Length=274, Percent_Identity=25.1824817518248, Blast_Score=78, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17554148, Length=289, Percent_Identity=26.2975778546713, Blast_Score=75, Evalue=6e-14, Organism=Caenorhabditis elegans, GI115533556, Length=408, Percent_Identity=24.0196078431373, Blast_Score=74, Evalue=2e-13, Organism=Caenorhabditis elegans, GI115533554, Length=426, Percent_Identity=23.4741784037559, Blast_Score=72, Evalue=5e-13, Organism=Caenorhabditis elegans, GI32565916, Length=256, Percent_Identity=22.65625, Blast_Score=72, Evalue=8e-13, Organism=Caenorhabditis elegans, GI32565914, Length=262, Percent_Identity=22.9007633587786, Blast_Score=71, Evalue=1e-12, Organism=Caenorhabditis elegans, GI71997452, Length=386, Percent_Identity=21.7616580310881, Blast_Score=68, Evalue=9e-12, Organism=Caenorhabditis elegans, GI17557872, Length=260, Percent_Identity=26.9230769230769, Blast_Score=67, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17563054, Length=270, Percent_Identity=24.0740740740741, Blast_Score=66, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17562692, Length=225, Percent_Identity=25.7777777777778, Blast_Score=65, Evalue=6e-11, Organism=Caenorhabditis elegans, GI17554962, Length=306, Percent_Identity=21.5686274509804, Blast_Score=65, Evalue=1e-10, Organism=Drosophila melanogaster, GI24583789, Length=368, Percent_Identity=24.4565217391304, Blast_Score=111, Evalue=1e-24, Organism=Drosophila melanogaster, GI17864456, Length=405, Percent_Identity=27.1604938271605, Blast_Score=101, Evalue=1e-21, Organism=Drosophila melanogaster, GI24654039, Length=405, Percent_Identity=27.1604938271605, Blast_Score=101, Evalue=1e-21, Organism=Drosophila melanogaster, GI24654041, Length=197, Percent_Identity=32.994923857868, Blast_Score=98, Evalue=1e-20, Organism=Drosophila melanogaster, GI24654037, Length=197, Percent_Identity=32.994923857868, Blast_Score=98, Evalue=1e-20, Organism=Drosophila melanogaster, GI24654044, Length=197, Percent_Identity=32.994923857868, Blast_Score=97, Evalue=2e-20, Organism=Drosophila melanogaster, GI24639764, Length=427, Percent_Identity=23.8875878220141, Blast_Score=93, Evalue=4e-19, Organism=Drosophila melanogaster, GI24584153, Length=357, Percent_Identity=22.96918767507, Blast_Score=91, Evalue=1e-18, Organism=Drosophila melanogaster, GI24648416, Length=475, Percent_Identity=23.3684210526316, Blast_Score=88, Evalue=1e-17, Organism=Drosophila melanogaster, GI21356189, Length=475, Percent_Identity=23.3684210526316, Blast_Score=88, Evalue=1e-17, Organism=Drosophila melanogaster, GI28573299, Length=397, Percent_Identity=23.6775818639798, Blast_Score=84, Evalue=2e-16, Organism=Drosophila melanogaster, GI20130167, Length=409, Percent_Identity=23.2273838630807, Blast_Score=83, Evalue=3e-16, Organism=Drosophila melanogaster, GI28573708, Length=410, Percent_Identity=22.1951219512195, Blast_Score=79, Evalue=6e-15, Organism=Drosophila melanogaster, GI28573707, Length=410, Percent_Identity=22.1951219512195, Blast_Score=79, Evalue=6e-15, Organism=Drosophila melanogaster, GI24656866, Length=437, Percent_Identity=24.9427917620137, Blast_Score=78, Evalue=1e-14, Organism=Drosophila melanogaster, GI45550478, Length=437, Percent_Identity=24.9427917620137, Blast_Score=78, Evalue=1e-14, Organism=Drosophila melanogaster, GI24656861, Length=437, Percent_Identity=24.9427917620137, Blast_Score=78, Evalue=1e-14, Organism=Drosophila melanogaster, GI24658658, Length=458, Percent_Identity=23.3624454148472, Blast_Score=77, Evalue=2e-14, Organism=Drosophila melanogaster, GI24655271, Length=434, Percent_Identity=23.7327188940092, Blast_Score=75, Evalue=8e-14, Organism=Drosophila melanogaster, GI24580790, Length=267, Percent_Identity=22.4719101123595, Blast_Score=75, Evalue=1e-13, Organism=Drosophila melanogaster, GI20130135, Length=434, Percent_Identity=23.7327188940092, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI24641682, Length=408, Percent_Identity=23.5294117647059, Blast_Score=74, Evalue=2e-13, Organism=Drosophila melanogaster, GI19920686, Length=420, Percent_Identity=24.5238095238095, Blast_Score=72, Evalue=9e-13, Organism=Drosophila melanogaster, GI45550364, Length=445, Percent_Identity=25.3932584269663, Blast_Score=72, Evalue=9e-13, Organism=Drosophila melanogaster, GI45550460, Length=448, Percent_Identity=24.5535714285714, Blast_Score=71, Evalue=1e-12, Organism=Drosophila melanogaster, GI24654215, Length=352, Percent_Identity=23.5795454545455, Blast_Score=71, Evalue=2e-12, Organism=Drosophila melanogaster, GI19922400, Length=351, Percent_Identity=23.6467236467236, Blast_Score=71, Evalue=2e-12, Organism=Drosophila melanogaster, GI24655255, Length=409, Percent_Identity=23.7163814180929, Blast_Score=70, Evalue=3e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 46234; Mature: 46234
Theoretical pI: Translated: 11.23; Mature: 11.23
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNENHAVPTAPPRIRRGQRIALALLMVSGIVNYLDRGTLAVASSAIRNDLGLSLSEMGLL CCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHH LSAFSWSYALCQFPVGGLVDRIGPRRLLGVGLIVWSLAQASGGIVSTFGWFIVARIVLGI HHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC GEAPQFPSAARVVSNWFPLRARGTPTGIFNAASPLGTALAPLLLAVLVASFNWRWAFVAT CCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEHHHH GALGLVVAVVWFALYRDPARAQLTAAERAYLDADAQTAVAMPKLTFADWRSLFSHGTTWG HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHCCCHHH MLIGFFGSVYLNWVYLTWLPGYLTMERHMSLIRTGFAASVPFLCGFVGSLVAGWLSDVVT HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RRSRSPVVSRRNAVVVAMLGMVAFTIPAALVQSNTVALACISVVIFLANAASACSWALAT HCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH AAAPPSRIASLGAIQNFGGFIGGALAPILTGVIAQKWSFVPALLTAAAIAFAGAMAYLLL CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VRKPIPEQAASTASGALPA HHCCCCHHHHCCCCCCCCC >Mature Secondary Structure MNENHAVPTAPPRIRRGQRIALALLMVSGIVNYLDRGTLAVASSAIRNDLGLSLSEMGLL CCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHH LSAFSWSYALCQFPVGGLVDRIGPRRLLGVGLIVWSLAQASGGIVSTFGWFIVARIVLGI HHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC GEAPQFPSAARVVSNWFPLRARGTPTGIFNAASPLGTALAPLLLAVLVASFNWRWAFVAT CCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEHHHH GALGLVVAVVWFALYRDPARAQLTAAERAYLDADAQTAVAMPKLTFADWRSLFSHGTTWG HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHCCCHHH MLIGFFGSVYLNWVYLTWLPGYLTMERHMSLIRTGFAASVPFLCGFVGSLVAGWLSDVVT HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RRSRSPVVSRRNAVVVAMLGMVAFTIPAALVQSNTVALACISVVIFLANAASACSWALAT HCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH AAAPPSRIASLGAIQNFGGFIGGALAPILTGVIAQKWSFVPALLTAAAIAFAGAMAYLLL CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VRKPIPEQAASTASGALPA HHCCCCHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7610040; 9278503 [H]