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The map label for this gene is dapA [H]

Identifier: 115351398

GI number: 115351398

Start: 1479120

End: 1480067

Strand: Direct

Name: dapA [H]

Synonym: Bamb_1345

Alternate gene names: 115351398

Gene position: 1479120-1480067 (Clockwise)

Preceding gene: 115351397

Following gene: 115351400

Centisome position: 41.59

GC content: 65.72

Gene sequence:

>948_bases
ATGCAACACCATCAGCAGTCGAGCGCGACCATCGAGGGGATCGTACCGGTGATGCTGACGCCGTTCGACGACGCCGGGGC
CATCGATTACGCGGGGCTCGAGCGACTCATCGAATGGTATCTGGCGCACGGTGCGGATGCGCTGTTCGCGGTCGCGCAAT
CGAGCGAGATGCAATTCCTGAGTCTGGCCGAACGGGCGGAACTCGCGCGTTTCGTGGTCGAGCGCGTGGCCGGGCGCGTG
CCTGTCGTCGCGTCCGGGCACATCAGCGACGATCTCGATGCGCAGGTCGCCGAGCTGCGCGTGGCCGCGGAATCGGGCGC
GCAGGGCGTCGTGCTCGTGACCAATCGGCTCGACCCGCAGCGCAAAGGCAGCGCCGCGTTTCTCGACCATCTTCACAAGC
TGCTTGCGCGCCTGCCGTCGGATTTGCCGCTCGGCTTGTATGAATGCCCGGCGCCTTACCGCCGATTGCTGTCCGACGAC
GAACTGCGTGCGTGCATCGACACCGGCCGCTTCGTGATGCTCAAGGACGTGAGTTGCGATCTGGAGACGGTGAAGCGGCG
CGTGGCGCTCGCCGCGGGATCGCCGCTGAAGATCCTGAATGCGAACGCCGCGATCGCGTGGGATGCGATGAAGGCGGGTT
CCGCCGGGTTCAACGGTGTGTTTACCAACTTTCATCCGGATCTGTATCGATGGCTGCGCACGCGGGGCGACTCGGATCCG
GCGCTCGCCGACGAGTTGTCGACGTTCCTGGTGGTCTCGGCCGTGTCGGAAGCACTGGGCTATCCGGCGCTGGCGAAGAT
CTATCACCAGCGGATCGGCACGTTCGCATCGATTCGCTGCCGCGCGATCGACTACGACGTGCGCGAGCGGTTCTGGGCGC
TCGATGCGGTGCTCGACAAGATCGTGTCCGGTACCGAGCACTTCCGTCGGCGGATCGCGGCGCGCTGA

Upstream 100 bases:

>100_bases
CCGATTCCCGAGCAGGCCGCGAGCACCGCGTCCGGCGCGCTGCCCGCCTGAGCGCCGCGCCTCCATCACGCATTCAAGAA
AGCAAGGAAAGGAGAAACAG

Downstream 100 bases:

>100_bases
CCGGTCCGGTCCGGCGTGCCGTGCATGAGTCGCACGCTGGATGGCGGGCAGGGCAGCGTCGACTGTCGAACGGGCGAAAA
AAAACGCCGCGCGAGGCGGC

Product: dihydrodipicolinate synthetase

Products: NA

Alternate protein names: DHDPS; Vegetative protein 81; VEG81 [H]

Number of amino acids: Translated: 315; Mature: 315

Protein sequence:

>315_residues
MQHHQQSSATIEGIVPVMLTPFDDAGAIDYAGLERLIEWYLAHGADALFAVAQSSEMQFLSLAERAELARFVVERVAGRV
PVVASGHISDDLDAQVAELRVAAESGAQGVVLVTNRLDPQRKGSAAFLDHLHKLLARLPSDLPLGLYECPAPYRRLLSDD
ELRACIDTGRFVMLKDVSCDLETVKRRVALAAGSPLKILNANAAIAWDAMKAGSAGFNGVFTNFHPDLYRWLRTRGDSDP
ALADELSTFLVVSAVSEALGYPALAKIYHQRIGTFASIRCRAIDYDVRERFWALDAVLDKIVSGTEHFRRRIAAR

Sequences:

>Translated_315_residues
MQHHQQSSATIEGIVPVMLTPFDDAGAIDYAGLERLIEWYLAHGADALFAVAQSSEMQFLSLAERAELARFVVERVAGRV
PVVASGHISDDLDAQVAELRVAAESGAQGVVLVTNRLDPQRKGSAAFLDHLHKLLARLPSDLPLGLYECPAPYRRLLSDD
ELRACIDTGRFVMLKDVSCDLETVKRRVALAAGSPLKILNANAAIAWDAMKAGSAGFNGVFTNFHPDLYRWLRTRGDSDP
ALADELSTFLVVSAVSEALGYPALAKIYHQRIGTFASIRCRAIDYDVRERFWALDAVLDKIVSGTEHFRRRIAAR
>Mature_315_residues
MQHHQQSSATIEGIVPVMLTPFDDAGAIDYAGLERLIEWYLAHGADALFAVAQSSEMQFLSLAERAELARFVVERVAGRV
PVVASGHISDDLDAQVAELRVAAESGAQGVVLVTNRLDPQRKGSAAFLDHLHKLLARLPSDLPLGLYECPAPYRRLLSDD
ELRACIDTGRFVMLKDVSCDLETVKRRVALAAGSPLKILNANAAIAWDAMKAGSAGFNGVFTNFHPDLYRWLRTRGDSDP
ALADELSTFLVVSAVSEALGYPALAKIYHQRIGTFASIRCRAIDYDVRERFWALDAVLDKIVSGTEHFRRRIAAR

Specific function: Important in N-acetylneuraminate lyase reaction [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DHDPS family [H]

Homologues:

Organism=Escherichia coli, GI1789620, Length=186, Percent_Identity=27.4193548387097, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR005263
- InterPro:   IPR002220
- InterPro:   IPR020625
- InterPro:   IPR020624 [H]

Pfam domain/function: PF00701 DHDPS [H]

EC number: =4.2.1.52 [H]

Molecular weight: Translated: 34600; Mature: 34600

Theoretical pI: Translated: 6.42; Mature: 6.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQHHQQSSATIEGIVPVMLTPFDDAGAIDYAGLERLIEWYLAHGADALFAVAQSSEMQFL
CCCCCCCCCHHHCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHH
SLAERAELARFVVERVAGRVPVVASGHISDDLDAQVAELRVAAESGAQGVVLVTNRLDPQ
HHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCC
RKGSAAFLDHLHKLLARLPSDLPLGLYECPAPYRRLLSDDELRACIDTGRFVMLKDVSCD
CCCCHHHHHHHHHHHHHCCCCCCCCHHCCCHHHHHHCCCHHHHHHHHCCCEEEEEECCCC
LETVKRRVALAAGSPLKILNANAAIAWDAMKAGSAGFNGVFTNFHPDLYRWLRTRGDSDP
HHHHHHHHHHHCCCCEEEEECCCEEEEHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCC
ALADELSTFLVVSAVSEALGYPALAKIYHQRIGTFASIRCRAIDYDVRERFWALDAVLDK
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHEEEEEECHHHHHHHHHHHHHHHH
IVSGTEHFRRRIAAR
HHCCHHHHHHHHCCC
>Mature Secondary Structure
MQHHQQSSATIEGIVPVMLTPFDDAGAIDYAGLERLIEWYLAHGADALFAVAQSSEMQFL
CCCCCCCCCHHHCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHH
SLAERAELARFVVERVAGRVPVVASGHISDDLDAQVAELRVAAESGAQGVVLVTNRLDPQ
HHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCC
RKGSAAFLDHLHKLLARLPSDLPLGLYECPAPYRRLLSDDELRACIDTGRFVMLKDVSCD
CCCCHHHHHHHHHHHHHCCCCCCCCHHCCCHHHHHHCCCHHHHHHHHCCCEEEEEECCCC
LETVKRRVALAAGSPLKILNANAAIAWDAMKAGSAGFNGVFTNFHPDLYRWLRTRGDSDP
HHHHHHHHHHHCCCCEEEEECCCEEEEHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCC
ALADELSTFLVVSAVSEALGYPALAKIYHQRIGTFASIRCRAIDYDVRERFWALDAVLDK
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHEEEEEECHHHHHHHHHHHHHHHH
IVSGTEHFRRRIAAR
HHCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8098035; 9384377; 9298659 [H]