| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is 115351327
Identifier: 115351327
GI number: 115351327
Start: 1394920
End: 1395366
Strand: Direct
Name: 115351327
Synonym: Bamb_1274
Alternate gene names: NA
Gene position: 1394920-1395366 (Clockwise)
Preceding gene: 115351326
Following gene: 115351328
Centisome position: 39.22
GC content: 66.89
Gene sequence:
>447_bases ATGACGACCCTGACCGGCCGATGTAGCCCCGGGTGGATTCGCGCGCTTCTTTCCCAGCCATGGGTCGGCGCGCTGGTTCG GCTCGCGCTCGTTTCCGCGTTCCTGATCGGCGGGGTGAACAAGGCGATGCACTTCGGCGATGCGATCGCGGAGCAGGCGC ATTTCGGCCTGCACCCGCCCGCGCTGTGGGCGGCGCTGGCGATTGCGGTCGAGATCGGCGGCTCGCTGTGCGTGGTGTTT CGCCGCTTCACGTGGCTCGGCGCGGGCAGCCTCGGGATGCTGACGCTGGTCGCGATGGTCGTGGCGAACGATTTCTGGAA TCGCTCGGGCGCCGACCATTTCATGGCGCTGAACAGCTTTTTTGAGCATCTCGGGCTGATCGCGGCACTCGTGCTCGCGA CCATCGTCGACGATGCGCGGCAACTGGCCGACAACGGCCGCGTGTGA
Upstream 100 bases:
>100_bases CACGGCCACGCACATGCGAACGCATGGGGCCGCACGTTGCCGACGTCGGACGCGAAGGGCTTCTGGGGCGCGTTCGGCTG TTCGTGCTGGGCGGTCTGAC
Downstream 100 bases:
>100_bases CCGGGATTGCCCAAGCCGATCCATCCTCTGATCAAACAACAAGGACCTCCGTTATGAAAACCCTTCGTTCCGCGCTGCTG GCGCTGACGATTGCCTGCGG
Product: DoxX family protein
Products: NA
Alternate protein names: DoxX Family; Transmembrane Protein
Number of amino acids: Translated: 148; Mature: 147
Protein sequence:
>148_residues MTTLTGRCSPGWIRALLSQPWVGALVRLALVSAFLIGGVNKAMHFGDAIAEQAHFGLHPPALWAALAIAVEIGGSLCVVF RRFTWLGAGSLGMLTLVAMVVANDFWNRSGADHFMALNSFFEHLGLIAALVLATIVDDARQLADNGRV
Sequences:
>Translated_148_residues MTTLTGRCSPGWIRALLSQPWVGALVRLALVSAFLIGGVNKAMHFGDAIAEQAHFGLHPPALWAALAIAVEIGGSLCVVF RRFTWLGAGSLGMLTLVAMVVANDFWNRSGADHFMALNSFFEHLGLIAALVLATIVDDARQLADNGRV >Mature_147_residues TTLTGRCSPGWIRALLSQPWVGALVRLALVSAFLIGGVNKAMHFGDAIAEQAHFGLHPPALWAALAIAVEIGGSLCVVFR RFTWLGAGSLGMLTLVAMVVANDFWNRSGADHFMALNSFFEHLGLIAALVLATIVDDARQLADNGRV
Specific function: Unknown
COG id: COG2259
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15785; Mature: 15653
Theoretical pI: Translated: 7.64; Mature: 7.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTLTGRCSPGWIRALLSQPWVGALVRLALVSAFLIGGVNKAMHFGDAIAEQAHFGLHPP CCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH ALWAALAIAVEIGGSLCVVFRRFTWLGAGSLGMLTLVAMVVANDFWNRSGADHFMALNSF HHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH FEHLGLIAALVLATIVDDARQLADNGRV HHHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure TTLTGRCSPGWIRALLSQPWVGALVRLALVSAFLIGGVNKAMHFGDAIAEQAHFGLHPP CCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH ALWAALAIAVEIGGSLCVVFRRFTWLGAGSLGMLTLVAMVVANDFWNRSGADHFMALNSF HHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH FEHLGLIAALVLATIVDDARQLADNGRV HHHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA