| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is bcsZ [H]
Identifier: 115351312
GI number: 115351312
Start: 1375059
End: 1376279
Strand: Direct
Name: bcsZ [H]
Synonym: Bamb_1259
Alternate gene names: 115351312
Gene position: 1375059-1376279 (Clockwise)
Preceding gene: 115351311
Following gene: 115351313
Centisome position: 38.66
GC content: 74.61
Gene sequence:
>1221_bases ATGGCGTGGGCATTCGCAAGGCGACGGGCAACGCGGCCGGCGCGGCGCGTCGGCACGACACTCGTGCTGGCGGTCGCGGC GGCGTGCGCGGCGACCGGCGCCGCCGGGCGCGCGCAGGCGGCGCAAAGCGGCGCGGCCGACGTGCAGTGCGGCGCGGCGT GGCCGCGCTGGGACGCGTTCAAGCGCGATTTCGTGTCGGCTGACGGCCGGGTGATCGACGTCGGCTCGGCCGATTCGCGC ACGGTATCGGAGGGGCAGGCGTATGGGCTGTTCTTCGCGCTGGTCGCGAACGACCGGCGCACGTTCGACACGATCCTCGC ATGGACCGAGAACAACCTCGCGCAGGGCGACCTGAGCGCCCGTCTGCCGGCGTGGCTGTGGGGCCGCGCGCCGGACGGCG CATGGCGCGTGCTCGACGCGAACGCGGCGTCGGACGCCGACCTGTGGATCGCATACACGCTCGTCGAAGCCGGCCGGCTG TGGCGCGAGCGCAGCTACACGGCGCGCGGCGCGCTGCTCGCGAAGCGCGTGCTCGACGACGAGACGGCCAGCGTGCCGGG CCTCGGCCTCACGCTGCTGCCCGGGCCGACCGGCTTCAAGCTGGCCAACGGTCAATGGCGCGTGAACCCGAGCTATTCGC CGCCGCAGGTGATCCGCGGGCTCGCCACGCGCCTGCCCGACGATCGGCGCTGGGCCGCGCTCGCGGCCAGCACTGGCCGC GTGCTGCTCGACACCGCGCCGAAGGGCTTCTCGCCGGACTGGGCGCTGTATCGCGCGGGCGCCGGCTTCGGACCCGATCC GCAAACCCGCGCGGAAAGCGCGTACAACGCGATCCGCGTGTATCTGTGGGCCGGCATGCTCGATCGCGCCGATCCGCTCG CCGCGCCGCTGCTCGCGCGGTTTGCACCGTTTGCCGACTACATCGCCGCGCATGGCGCGCCGCCGGAGAAGGTCGACACG ACGACCGGCGTCGCGGGCCCGAACGACGGCAACGGCGGCTTCTCCGCGGCGGCCGTGCCGTTCCTCGACGCGCGCGGCCA GCGTGCGCTCGCCGATGCGCAGGCCGCGCGGGTCGATACGCTCGCGCGCCAGTCGGCGCCCGGCTACTACACGAGCGTGC TGACGCTGTTCGGCCTCGGCTGGCGCGAGGGCCGCTACCGGTTCGGCGCGGACGGCTCGCTCGACGCGCGCTGGGAGGGG CATCCATGCGCGGCCCGATGA
Upstream 100 bases:
>100_bases CGTGCTCGGCGTGGTCGGCGTCGCCGCGGGGCTGCTGCTCGCGCTCGGCGTGTTCAGCGTGCTGCAGAGAATCGCCGCGC GTCGACGGGGGATGTAACGG
Downstream 100 bases:
>100_bases AGCGCACCGCACCGCGCGTCGCGGGGTTCGCGTGGCTCGCGTCGTCGGTCTGCGCGGCGGCGCCGGCCGCGGCTGCTGCC ACCACCGCCGCCGCGGTTGC
Product: endo-1,4-D-glucanase
Products: NA
Alternate protein names: Carboxymethylcellulase; CMCase; Cellulase; Endo-1,4-beta-glucanase [H]
Number of amino acids: Translated: 406; Mature: 405
Protein sequence:
>406_residues MAWAFARRRATRPARRVGTTLVLAVAAACAATGAAGRAQAAQSGAADVQCGAAWPRWDAFKRDFVSADGRVIDVGSADSR TVSEGQAYGLFFALVANDRRTFDTILAWTENNLAQGDLSARLPAWLWGRAPDGAWRVLDANAASDADLWIAYTLVEAGRL WRERSYTARGALLAKRVLDDETASVPGLGLTLLPGPTGFKLANGQWRVNPSYSPPQVIRGLATRLPDDRRWAALAASTGR VLLDTAPKGFSPDWALYRAGAGFGPDPQTRAESAYNAIRVYLWAGMLDRADPLAAPLLARFAPFADYIAAHGAPPEKVDT TTGVAGPNDGNGGFSAAAVPFLDARGQRALADAQAARVDTLARQSAPGYYTSVLTLFGLGWREGRYRFGADGSLDARWEG HPCAAR
Sequences:
>Translated_406_residues MAWAFARRRATRPARRVGTTLVLAVAAACAATGAAGRAQAAQSGAADVQCGAAWPRWDAFKRDFVSADGRVIDVGSADSR TVSEGQAYGLFFALVANDRRTFDTILAWTENNLAQGDLSARLPAWLWGRAPDGAWRVLDANAASDADLWIAYTLVEAGRL WRERSYTARGALLAKRVLDDETASVPGLGLTLLPGPTGFKLANGQWRVNPSYSPPQVIRGLATRLPDDRRWAALAASTGR VLLDTAPKGFSPDWALYRAGAGFGPDPQTRAESAYNAIRVYLWAGMLDRADPLAAPLLARFAPFADYIAAHGAPPEKVDT TTGVAGPNDGNGGFSAAAVPFLDARGQRALADAQAARVDTLARQSAPGYYTSVLTLFGLGWREGRYRFGADGSLDARWEG HPCAAR >Mature_405_residues AWAFARRRATRPARRVGTTLVLAVAAACAATGAAGRAQAAQSGAADVQCGAAWPRWDAFKRDFVSADGRVIDVGSADSRT VSEGQAYGLFFALVANDRRTFDTILAWTENNLAQGDLSARLPAWLWGRAPDGAWRVLDANAASDADLWIAYTLVEAGRLW RERSYTARGALLAKRVLDDETASVPGLGLTLLPGPTGFKLANGQWRVNPSYSPPQVIRGLATRLPDDRRWAALAASTGRV LLDTAPKGFSPDWALYRAGAGFGPDPQTRAESAYNAIRVYLWAGMLDRADPLAAPLLARFAPFADYIAAHGAPPEKVDTT TGVAGPNDGNGGFSAAAVPFLDARGQRALADAQAARVDTLARQSAPGYYTSVLTLFGLGWREGRYRFGADGSLDARWEGH PCAAR
Specific function: Hydrolyzes carboxymethylcellulose [H]
COG id: COG3405
COG function: function code G; Endoglucanase Y
Gene ontology:
Cell location: Secreted [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 8 (cellulase D) family [H]
Homologues:
Organism=Escherichia coli, GI1789951, Length=363, Percent_Identity=49.5867768595041, Blast_Score=334, Evalue=5e-93,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008928 - InterPro: IPR012341 - InterPro: IPR002037 - InterPro: IPR019834 [H]
Pfam domain/function: PF01270 Glyco_hydro_8 [H]
EC number: =3.2.1.4 [H]
Molecular weight: Translated: 43292; Mature: 43161
Theoretical pI: Translated: 9.65; Mature: 9.65
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 0.2 %Met (Mature Protein) 1.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAWAFARRRATRPARRVGTTLVLAVAAACAATGAAGRAQAAQSGAADVQCGAAWPRWDAF CCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCEEECCCCCCHHHH KRDFVSADGRVIDVGSADSRTVSEGQAYGLFFALVANDRRTFDTILAWTENNLAQGDLSA HHHHHCCCCCEEECCCCCCCCCCCCCCEEEEEEEEECCCCCEEHHEEECCCCCCCCCHHH RLPAWLWGRAPDGAWRVLDANAASDADLWIAYTLVEAGRLWRERSYTARGALLAKRVLDD CCCHHEECCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCC ETASVPGLGLTLLPGPTGFKLANGQWRVNPSYSPPQVIRGLATRLPDDRRWAALAASTGR CCCCCCCCCEEECCCCCCCEECCCEEEECCCCCCHHHHHHHHHHCCCCCCEEEEECCCCC VLLDTAPKGFSPDWALYRAGAGFGPDPQTRAESAYNAIRVYLWAGMLDRADPLAAPLLAR EEEECCCCCCCCCHHEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH FAPFADYIAAHGAPPEKVDTTTGVAGPNDGNGGFSAAAVPFLDARGQRALADAQAARVDT HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCHHHCCCCHHHHHHHHHHHHH LARQSAPGYYTSVLTLFGLGWREGRYRFGADGSLDARWEGHPCAAR HHHHCCCCHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCC >Mature Secondary Structure AWAFARRRATRPARRVGTTLVLAVAAACAATGAAGRAQAAQSGAADVQCGAAWPRWDAF CCHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCEEECCCCCCHHHH KRDFVSADGRVIDVGSADSRTVSEGQAYGLFFALVANDRRTFDTILAWTENNLAQGDLSA HHHHHCCCCCEEECCCCCCCCCCCCCCEEEEEEEEECCCCCEEHHEEECCCCCCCCCHHH RLPAWLWGRAPDGAWRVLDANAASDADLWIAYTLVEAGRLWRERSYTARGALLAKRVLDD CCCHHEECCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCC ETASVPGLGLTLLPGPTGFKLANGQWRVNPSYSPPQVIRGLATRLPDDRRWAALAASTGR CCCCCCCCCEEECCCCCCCEECCCEEEECCCCCCHHHHHHHHHHCCCCCCEEEEECCCCC VLLDTAPKGFSPDWALYRAGAGFGPDPQTRAESAYNAIRVYLWAGMLDRADPLAAPLLAR EEEECCCCCCCCCHHEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH FAPFADYIAAHGAPPEKVDTTTGVAGPNDGNGGFSAAAVPFLDARGQRALADAQAARVDT HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCHHHCCCCHHHHHHHHHHHHH LARQSAPGYYTSVLTLFGLGWREGRYRFGADGSLDARWEGHPCAAR HHHHCCCCHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]