| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is bcsB [H]
Identifier: 115351311
GI number: 115351311
Start: 1372740
End: 1375055
Strand: Direct
Name: bcsB [H]
Synonym: Bamb_1258
Alternate gene names: 115351311
Gene position: 1372740-1375055 (Clockwise)
Preceding gene: 115351308
Following gene: 115351312
Centisome position: 38.6
GC content: 72.41
Gene sequence:
>2316_bases ATGAAGCCGGCCGTTTCGCTGTTCGTCCTGTCGGTGGCCACGTTCGGCGCGCTCCATGCAGCCGCGCTGTCGGCCGCACC GATGCCGGCGGTGCCTGCTGCCGCGTCGGCGTCCGCCGGGACTCCGGCCGCGCCGTCGCCCGCCAGCGGCGCGGCCGTGC CGAATGCCGCCAGCGTGGCGTCCGCCGGGCTGCCGACGACGACCGTGCACCTGCCGTTCGCGTCGCTCGGCGCATTCGAT CCGGTGCGCCTGCGCGGCGCCGACGACGCGCGCACGATCAACGCGGGCGTGCGGCTCGATCGCGTGGTGACCGGCGCGCG GCTGCGTCTGACCTACGCGTATTCGCCGTCGCTGGTGTTTCCCATGTCGCACCTGAAGGTGTCGATGAACGGCGAGGTGA TCGCGACGGTCCCGTTCGACGCGAAGCGCGCGGGCCGCACGGTCACGCAGGACATCCCGATCGATCCGCGCTACTTCTCC GATTTCAACCAGATCGGCCTGCGCCTGATCGCGCATTACACGCTCGACCATTGCGAGGACCCGTCGAACTCGGCGTTGTG GGCCGACGTGAGCCCAACGAGCGAGCTGATCCTCGACGAATCGCCGCTGCGCCTGCCGAACGACCTCGCGCTGCTGCCCG CGCCGTTCTTCGACCGGCGCGACAACGGGCTGCTGCGGCTGCCGTTCGTGCTGCCGGCATCGCCCGATTCGGCGACGCTG CGCAGCGCCGGCGTGCTCGCGTCGTGGTTCGGCGCGCAGGCCGACTACCGGCAGGCGCGCTTCCCGGTCGCGGCGACGCT GCCGGCCGACGATCAGGCGGTGGTGGTCGGCACGGCCGCGAACCTGCCGGCCGGCCTCGCGCTGCCGTCGGTCAACGGCC CGCTGCTCGCGGTGGCCGACAACCCGGCCGCGCCGGGCCGCAAGCTGCTGGTCGTGACGGGCCGCACGGCGGCCGAAGTC GACGACGCGGTCGCGGCGCTGGTGCTCGGCCGTGCGGCGCTGTCGGGCCCGGCGGCCACTGTCGCGCACGTCGATCTCGG CGCGCCCCGCAAACCGTACGACGCGCCGCGCTGGCTGCCGGTGAACCGGCCGATCACCTTCCGCGAGCTCGTGTCGGACC CGCGCGAGCTCGAAGTGCGCGGCACGACGCCCGACGCGATCCGCCTGAACCTGCGCGTGCCGGCCGATCTCCATTCGTGG AACGGCTCGGGCGTGCCGATCACGCTGCGCTACCGCTATACGGCGCCGACGGTGCAGGACGACTCGACGCTCGCCGTCGA GATCAACGAACAGCTCGTGAAGTCGTACCGGCTCGGGCCGGCCCATGCGGAAGACGCGCGCGGGCGCATGCAGCTGCCGC TGCTCGCGGTGCCGGAAGGGCGCGTGACGAGCGATGTCGACATCCCGGCGTTTCGCGTCGGCAGCGGCAATCAGCTGCAG TTCCGCTTCACGCTCGATTCGCAGAAGACGGGGCTCTGCTCGAGCACCGCGACCGAGCCGCAGCGCGCGGCGATCGATCC CGATTCGACGATCGACTTCTCGCACTTCGTCCACTACGCGCAGTTGCCGAACCTCGCGTTCTTCGCGAACAGCGGCTTCC CGTTCACGCGCTTCGCCGACCTGTCGCAGACGGCCGTCGTGATCCCGGACCGGCCATCGCCGCAGGAGCTCGAAGCCTAT CTGACGATGCTCGGCCACATGGGCCAGTGGACCGGCTTCCCGGCGCTGCGCGTGGAGGTTGCGCGGCCCGGCGACGTCGC CGCGCTGGCAGGGCGCAAGGACCTGCTCGTGATCGACGGCTCGCCCGCGTCGCCGCTGCTGTCGCACTGGCGCGCCGCGC TGCCGCTGACGATCGACCAGCAGGGCGGCACGGGCGCGACGCGGGTCGCCTTCTCGGTGAAGGAACGCTGGCGCAACGGC ATCGGCATGGCCGACGGCGGCGCGCATATCGAGCAGACGGGCTCGCTCGCCGCGCTCGCCGGCTTCGAGCTGCCGGGCAG CCACGGCCGCAGCGTCGTCGCGCTGACGGCGACCGACCAGACGCGCCTGGCCGATCTGCTCGACGTATTCGAGAAGCCGG GCCTCGTGTCGCAGCTGCAGGGCGACCTCGCGCTGGTGCGGCCGGGGCAGGTGGACAGCCTCCGTGTGGGCGAGCCGTAC GTGGTCGGCTTCGTGCCGTGGTATGCGCGCGTCTGGACGCAGGCGGCGCGGCATCCGGTCGTGCTCGGCGTGGTCGGCGT CGCCGCGGGGCTGCTGCTCGCGCTCGGCGTGTTCAGCGTGCTGCAGAGAATCGCCGCGCGTCGACGGGGGATGTAA
Upstream 100 bases:
>100_bases GGGAAGCAGTGGGGATGTGCACTCGCGGGCAGAGCTGCTGTGCGCGCGTCGGTCGCGACGCGCTTGATAACCGGACGATC ACGACGATGCGGAGCCGCGC
Downstream 100 bases:
>100_bases CGGATGGCGTGGGCATTCGCAAGGCGACGGGCAACGCGGCCGGCGCGGCGCGTCGGCACGACACTCGTGCTGGCGGTCGC GGCGGCGTGCGCGGCGACCG
Product: cellulose synthase regulator protein
Products: NA
Alternate protein names: Cellulose synthase regulatory subunit [H]
Number of amino acids: Translated: 771; Mature: 771
Protein sequence:
>771_residues MKPAVSLFVLSVATFGALHAAALSAAPMPAVPAAASASAGTPAAPSPASGAAVPNAASVASAGLPTTTVHLPFASLGAFD PVRLRGADDARTINAGVRLDRVVTGARLRLTYAYSPSLVFPMSHLKVSMNGEVIATVPFDAKRAGRTVTQDIPIDPRYFS DFNQIGLRLIAHYTLDHCEDPSNSALWADVSPTSELILDESPLRLPNDLALLPAPFFDRRDNGLLRLPFVLPASPDSATL RSAGVLASWFGAQADYRQARFPVAATLPADDQAVVVGTAANLPAGLALPSVNGPLLAVADNPAAPGRKLLVVTGRTAAEV DDAVAALVLGRAALSGPAATVAHVDLGAPRKPYDAPRWLPVNRPITFRELVSDPRELEVRGTTPDAIRLNLRVPADLHSW NGSGVPITLRYRYTAPTVQDDSTLAVEINEQLVKSYRLGPAHAEDARGRMQLPLLAVPEGRVTSDVDIPAFRVGSGNQLQ FRFTLDSQKTGLCSSTATEPQRAAIDPDSTIDFSHFVHYAQLPNLAFFANSGFPFTRFADLSQTAVVIPDRPSPQELEAY LTMLGHMGQWTGFPALRVEVARPGDVAALAGRKDLLVIDGSPASPLLSHWRAALPLTIDQQGGTGATRVAFSVKERWRNG IGMADGGAHIEQTGSLAALAGFELPGSHGRSVVALTATDQTRLADLLDVFEKPGLVSQLQGDLALVRPGQVDSLRVGEPY VVGFVPWYARVWTQAARHPVVLGVVGVAAGLLLALGVFSVLQRIAARRRGM
Sequences:
>Translated_771_residues MKPAVSLFVLSVATFGALHAAALSAAPMPAVPAAASASAGTPAAPSPASGAAVPNAASVASAGLPTTTVHLPFASLGAFD PVRLRGADDARTINAGVRLDRVVTGARLRLTYAYSPSLVFPMSHLKVSMNGEVIATVPFDAKRAGRTVTQDIPIDPRYFS DFNQIGLRLIAHYTLDHCEDPSNSALWADVSPTSELILDESPLRLPNDLALLPAPFFDRRDNGLLRLPFVLPASPDSATL RSAGVLASWFGAQADYRQARFPVAATLPADDQAVVVGTAANLPAGLALPSVNGPLLAVADNPAAPGRKLLVVTGRTAAEV DDAVAALVLGRAALSGPAATVAHVDLGAPRKPYDAPRWLPVNRPITFRELVSDPRELEVRGTTPDAIRLNLRVPADLHSW NGSGVPITLRYRYTAPTVQDDSTLAVEINEQLVKSYRLGPAHAEDARGRMQLPLLAVPEGRVTSDVDIPAFRVGSGNQLQ FRFTLDSQKTGLCSSTATEPQRAAIDPDSTIDFSHFVHYAQLPNLAFFANSGFPFTRFADLSQTAVVIPDRPSPQELEAY LTMLGHMGQWTGFPALRVEVARPGDVAALAGRKDLLVIDGSPASPLLSHWRAALPLTIDQQGGTGATRVAFSVKERWRNG IGMADGGAHIEQTGSLAALAGFELPGSHGRSVVALTATDQTRLADLLDVFEKPGLVSQLQGDLALVRPGQVDSLRVGEPY VVGFVPWYARVWTQAARHPVVLGVVGVAAGLLLALGVFSVLQRIAARRRGM >Mature_771_residues MKPAVSLFVLSVATFGALHAAALSAAPMPAVPAAASASAGTPAAPSPASGAAVPNAASVASAGLPTTTVHLPFASLGAFD PVRLRGADDARTINAGVRLDRVVTGARLRLTYAYSPSLVFPMSHLKVSMNGEVIATVPFDAKRAGRTVTQDIPIDPRYFS DFNQIGLRLIAHYTLDHCEDPSNSALWADVSPTSELILDESPLRLPNDLALLPAPFFDRRDNGLLRLPFVLPASPDSATL RSAGVLASWFGAQADYRQARFPVAATLPADDQAVVVGTAANLPAGLALPSVNGPLLAVADNPAAPGRKLLVVTGRTAAEV DDAVAALVLGRAALSGPAATVAHVDLGAPRKPYDAPRWLPVNRPITFRELVSDPRELEVRGTTPDAIRLNLRVPADLHSW NGSGVPITLRYRYTAPTVQDDSTLAVEINEQLVKSYRLGPAHAEDARGRMQLPLLAVPEGRVTSDVDIPAFRVGSGNQLQ FRFTLDSQKTGLCSSTATEPQRAAIDPDSTIDFSHFVHYAQLPNLAFFANSGFPFTRFADLSQTAVVIPDRPSPQELEAY LTMLGHMGQWTGFPALRVEVARPGDVAALAGRKDLLVIDGSPASPLLSHWRAALPLTIDQQGGTGATRVAFSVKERWRNG IGMADGGAHIEQTGSLAALAGFELPGSHGRSVVALTATDQTRLADLLDVFEKPGLVSQLQGDLALVRPGQVDSLRVGEPY VVGFVPWYARVWTQAARHPVVLGVVGVAAGLLLALGVFSVLQRIAARRRGM
Specific function: Binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP) [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Single-pass type I membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the AcsB/BcsB family [H]
Homologues:
Organism=Escherichia coli, GI1789952, Length=746, Percent_Identity=34.5844504021448, Blast_Score=407, Evalue=1e-114,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003920 - InterPro: IPR018513 [H]
Pfam domain/function: PF03170 BcsB [H]
EC number: NA
Molecular weight: Translated: 81510; Mature: 81510
Theoretical pI: Translated: 7.28; Mature: 7.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKPAVSLFVLSVATFGALHAAALSAAPMPAVPAAASASAGTPAAPSPASGAAVPNAASVA CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH SAGLPTTTVHLPFASLGAFDPVRLRGADDARTINAGVRLDRVVTGARLRLTYAYSPSLVF HCCCCEEEEECCHHHHCCCCCEEEECCCCCEEEECCCEEEEEECCCEEEEEEEECCCEEE PMSHLKVSMNGEVIATVPFDAKRAGRTVTQDIPIDPRYFSDFNQIGLRLIAHYTLDHCED EHHHEEEEECCCEEEECCCCHHHCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC PSNSALWADVSPTSELILDESPLRLPNDLALLPAPFFDRRDNGLLRLPFVLPASPDSATL CCCCEEEEECCCCHHEEECCCCCCCCCCCEEECCCCCCCCCCCEEEEEEEEECCCCCHHH RSAGVLASWFGAQADYRQARFPVAATLPADDQAVVVGTAANLPAGLALPSVNGPLLAVAD HHCCHHHHHHCCCCCHHHHCCCEEEECCCCCCEEEEEECCCCCCCEECCCCCCCEEEEEC NPAAPGRKLLVVTGRTAAEVDDAVAALVLGRAALSGPAATVAHVDLGAPRKPYDAPRWLP CCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCEEE VNRPITFRELVSDPRELEVRGTTPDAIRLNLRVPADLHSWNGSGVPITLRYRYTAPTVQD CCCCEEHHHHHCCCCEEEEECCCCCEEEEEEECCCCCCCCCCCCCEEEEEEEEECCCCCC DSTLAVEINEQLVKSYRLGPAHAEDARGRMQLPLLAVPEGRVTSDVDIPAFRVGSGNQLQ CCEEEEEECHHHHHHHCCCCCCCCCCCCCEECCEEECCCCCCCCCCCCCEEEECCCCEEE FRFTLDSQKTGLCSSTATEPQRAAIDPDSTIDFSHFVHYAQLPNLAFFANSGFPFTRFAD EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCEECC LSQTAVVIPDRPSPQELEAYLTMLGHMGQWTGFPALRVEVARPGDVAALAGRKDLLVIDG CCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCEEEECCCCEEEEECC SPASPLLSHWRAALPLTIDQQGGTGATRVAFSVKERWRNGIGMADGGAHIEQTGSLAALA CCCCHHHHHHHHHCCEEEECCCCCCHHHEEEEHHHHHHCCCCCCCCCCCHHCCCCEEEEE GFELPGSHGRSVVALTATDQTRLADLLDVFEKPGLVSQLQGDLALVRPGQVDSLRVGEPY CCCCCCCCCCEEEEEEECCHHHHHHHHHHHHCCCHHHHHCCCEEEECCCCCCEEECCCCE VVGFVPWYARVWTQAARHPVVLGVVGVAAGLLLALGVFSVLQRIAARRRGM EEEEHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MKPAVSLFVLSVATFGALHAAALSAAPMPAVPAAASASAGTPAAPSPASGAAVPNAASVA CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH SAGLPTTTVHLPFASLGAFDPVRLRGADDARTINAGVRLDRVVTGARLRLTYAYSPSLVF HCCCCEEEEECCHHHHCCCCCEEEECCCCCEEEECCCEEEEEECCCEEEEEEEECCCEEE PMSHLKVSMNGEVIATVPFDAKRAGRTVTQDIPIDPRYFSDFNQIGLRLIAHYTLDHCED EHHHEEEEECCCEEEECCCCHHHCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC PSNSALWADVSPTSELILDESPLRLPNDLALLPAPFFDRRDNGLLRLPFVLPASPDSATL CCCCEEEEECCCCHHEEECCCCCCCCCCCEEECCCCCCCCCCCEEEEEEEEECCCCCHHH RSAGVLASWFGAQADYRQARFPVAATLPADDQAVVVGTAANLPAGLALPSVNGPLLAVAD HHCCHHHHHHCCCCCHHHHCCCEEEECCCCCCEEEEEECCCCCCCEECCCCCCCEEEEEC NPAAPGRKLLVVTGRTAAEVDDAVAALVLGRAALSGPAATVAHVDLGAPRKPYDAPRWLP CCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCEEE VNRPITFRELVSDPRELEVRGTTPDAIRLNLRVPADLHSWNGSGVPITLRYRYTAPTVQD CCCCEEHHHHHCCCCEEEEECCCCCEEEEEEECCCCCCCCCCCCCEEEEEEEEECCCCCC DSTLAVEINEQLVKSYRLGPAHAEDARGRMQLPLLAVPEGRVTSDVDIPAFRVGSGNQLQ CCEEEEEECHHHHHHHCCCCCCCCCCCCCEECCEEECCCCCCCCCCCCCEEEECCCCEEE FRFTLDSQKTGLCSSTATEPQRAAIDPDSTIDFSHFVHYAQLPNLAFFANSGFPFTRFAD EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCEECC LSQTAVVIPDRPSPQELEAYLTMLGHMGQWTGFPALRVEVARPGDVAALAGRKDLLVIDG CCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCEEEECCCCEEEEECC SPASPLLSHWRAALPLTIDQQGGTGATRVAFSVKERWRNGIGMADGGAHIEQTGSLAALA CCCCHHHHHHHHHCCEEEECCCCCCHHHEEEEHHHHHHCCCCCCCCCCCHHCCCCEEEEE GFELPGSHGRSVVALTATDQTRLADLLDVFEKPGLVSQLQGDLALVRPGQVDSLRVGEPY CCCCCCCCCCEEEEEEECCHHHHHHHHHHHHCCCHHHHHCCCEEEECCCCCCEEECCCCE VVGFVPWYARVWTQAARHPVVLGVVGVAAGLLLALGVFSVLQRIAARRRGM EEEEHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 12024217 [H]