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The map label for this gene is ynbD [H]

Identifier: 115351307

GI number: 115351307

Start: 1369989

End: 1371392

Strand: Direct

Name: ynbD [H]

Synonym: Bamb_1254

Alternate gene names: 115351307

Gene position: 1369989-1371392 (Clockwise)

Preceding gene: 115351306

Following gene: 115351308

Centisome position: 38.52

GC content: 73.08

Gene sequence:

>1404_bases
GTGAGCGCGCTCGGCGGTGGCGCGGGCGGCGGTCTGGCCGAGCCGGCGGCCGGCGCGCGCGATGCGTCGTTCGCGCTGCG
CGTCGGCTGGCTCGCGGCGATGGGCGCGGTGTTCTTCTCGACCTACGGCTTCGCGAACTGGCTCGCCGCGCGCCGCGCCG
AGGTGCCGACCTTCGCGTTCGGCTGGGAGCACGCGATTCCGTTCGTGCCGTGGACCATCGTGCCGTACTGGTCGATCGAC
CTGCTGTACGCGCTGTCGTTCTTCTTCTGGACTCGCCGCGACGATCTGCTCGATCACGTGAAGCGGCTGTTGACCGTGCA
GCTGATCTCGGTCGCGTGCTTCATCGCATGGCCGCTGCGCTTCGGCTTCGAGCGGCCCGATGCGGGCGGCGCGGCCGGCG
CGCTGTTCACGCTGCTGATGGGATTCGACAAGCCGTTCAACCAGGCGCCGTCGCTGCACATCGGCCTGCTCGTCGTGTTG
TGGGCCGTCTATGCGAAGCATCTGCGCGGCACCGCCGCGCGCATCGTGCTGCATGCGTGGTTCGCGGCGATCGGCGTGTC
GGTGCTGACGACTTATCAGCATCACATGATCGACGTGCCGACCGGCGCGGCCGTCGGTTGTTTCGCGTTGTTCCTGTTTC
CATTGCGTGACGCCGCGGGGCGGTTGCCGGGTGCAGCCGCTTTCCCGTCCGCCGCCGGCCGCGCGCTGGCGCGCCGCTAC
GCGCTCGGCGCGGCGCTGGTCGCGCTCGCGGCGCTTTACTGCGTGCCGCGTGCGCCGTGCGCGGCGCTGGCGGCCGGGTG
GGGTGCGCTGGCGCTCGCGTGCGTTGCGTCGATCTATTGGCGCGGCGCGCCCGGCGCGTTCCAGAAGGACGATGCGGGCC
GCTTGCCGGTGTCCGTCCGCTGGCTGCTCGCGCCGACGATCGCCGGGGCGTTCGTCAATTCGCGGTTATGGACGTTCCGG
CAGCCGGCGGCGGTGCGGATCGACGAGCGCGTGTGGATCGGCCGCACGCCGACCACGCGTGACGTGCGGCGCCACGGCTT
CACGGCGCTCGTCGACCTGACGGCCGAGATGCCGCGCTGGGCCGCGACCGACGCGTCTCTCGCGTATGTGGCGGTGCCGC
AACTCGACCTCGTCGCGCCCACGCCCGCGCAGCTCGCGGCGGCCGTCGCGGCACTCGAACGCCTGCATGCGGAAGGGCGC
GACGTGCTGGTCTGCTGCGCGCTCGGCTACGGGCGCAGCGTGTTGTGCGCGGCCGCGTGGGTCGCCGCGCGGCGCGGGCT
GGGCGATGCGCGCGACGCGCTCGCGGCGGTACGGGCGGTGCGGCCGCGCGCGGTATGGTCGGACGACGGCGTGGCCGTGC
TGCAGGACTGGATCGACCGCCGCCGCGTGACGGGAGGGCCGTGA

Upstream 100 bases:

>100_bases
TGGACGAGCTCGTCGCGCGCGCCGGTTTCCGCAAGCTCGACCAGCGCATCGACGAGATGGGCATCTTCACGGTGAGCCTC
GCGCAGCGGGTCGACGCGTC

Downstream 100 bases:

>100_bases
TGCGCGACCCGTCCGCACCGTTCCGGATCGCCGCCGCGCGCGGTGCGCTCGATGCGGGCGCGTGGGCGATCGCGGCCGCG
TTGGCCGCGGCCGGCGCCGG

Product: dual specificity protein phosphatase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 467; Mature: 466

Protein sequence:

>467_residues
MSALGGGAGGGLAEPAAGARDASFALRVGWLAAMGAVFFSTYGFANWLAARRAEVPTFAFGWEHAIPFVPWTIVPYWSID
LLYALSFFFWTRRDDLLDHVKRLLTVQLISVACFIAWPLRFGFERPDAGGAAGALFTLLMGFDKPFNQAPSLHIGLLVVL
WAVYAKHLRGTAARIVLHAWFAAIGVSVLTTYQHHMIDVPTGAAVGCFALFLFPLRDAAGRLPGAAAFPSAAGRALARRY
ALGAALVALAALYCVPRAPCAALAAGWGALALACVASIYWRGAPGAFQKDDAGRLPVSVRWLLAPTIAGAFVNSRLWTFR
QPAAVRIDERVWIGRTPTTRDVRRHGFTALVDLTAEMPRWAATDASLAYVAVPQLDLVAPTPAQLAAAVAALERLHAEGR
DVLVCCALGYGRSVLCAAAWVAARRGLGDARDALAAVRAVRPRAVWSDDGVAVLQDWIDRRRVTGGP

Sequences:

>Translated_467_residues
MSALGGGAGGGLAEPAAGARDASFALRVGWLAAMGAVFFSTYGFANWLAARRAEVPTFAFGWEHAIPFVPWTIVPYWSID
LLYALSFFFWTRRDDLLDHVKRLLTVQLISVACFIAWPLRFGFERPDAGGAAGALFTLLMGFDKPFNQAPSLHIGLLVVL
WAVYAKHLRGTAARIVLHAWFAAIGVSVLTTYQHHMIDVPTGAAVGCFALFLFPLRDAAGRLPGAAAFPSAAGRALARRY
ALGAALVALAALYCVPRAPCAALAAGWGALALACVASIYWRGAPGAFQKDDAGRLPVSVRWLLAPTIAGAFVNSRLWTFR
QPAAVRIDERVWIGRTPTTRDVRRHGFTALVDLTAEMPRWAATDASLAYVAVPQLDLVAPTPAQLAAAVAALERLHAEGR
DVLVCCALGYGRSVLCAAAWVAARRGLGDARDALAAVRAVRPRAVWSDDGVAVLQDWIDRRRVTGGP
>Mature_466_residues
SALGGGAGGGLAEPAAGARDASFALRVGWLAAMGAVFFSTYGFANWLAARRAEVPTFAFGWEHAIPFVPWTIVPYWSIDL
LYALSFFFWTRRDDLLDHVKRLLTVQLISVACFIAWPLRFGFERPDAGGAAGALFTLLMGFDKPFNQAPSLHIGLLVVLW
AVYAKHLRGTAARIVLHAWFAAIGVSVLTTYQHHMIDVPTGAAVGCFALFLFPLRDAAGRLPGAAAFPSAAGRALARRYA
LGAALVALAALYCVPRAPCAALAAGWGALALACVASIYWRGAPGAFQKDDAGRLPVSVRWLLAPTIAGAFVNSRLWTFRQ
PAAVRIDERVWIGRTPTTRDVRRHGFTALVDLTAEMPRWAATDASLAYVAVPQLDLVAPTPAQLAAAVAALERLHAEGRD
VLVCCALGYGRSVLCAAAWVAARRGLGDARDALAAVRAVRPRAVWSDDGVAVLQDWIDRRRVTGGP

Specific function: Unknown

COG id: COG0671

COG function: function code I; Membrane-associated phospholipid phosphatase

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the protein-tyrosine phosphatase family [H]

Homologues:

Organism=Escherichia coli, GI1787679, Length=445, Percent_Identity=35.9550561797753, Blast_Score=238, Evalue=9e-64,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000387
- InterPro:   IPR000340
- InterPro:   IPR020422
- InterPro:   IPR000326
- InterPro:   IPR016130 [H]

Pfam domain/function: PF00782 DSPc; PF01569 PAP2 [H]

EC number: NA

Molecular weight: Translated: 49965; Mature: 49834

Theoretical pI: Translated: 10.02; Mature: 10.02

Prosite motif: PS50056 TYR_PHOSPHATASE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHCCCCHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SALGGGAGGGLAEPAAGARDASFALRVGWLAAMGAVFFSTYGFANWLAARRAEVPTFAF
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEC
GWEHAIPFVPWTIVPYWSIDLLYALSFFFWTRRDDLLDHVKRLLTVQLISVACFIAWPLR
CHHHCCCCCCCEECCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FGFERPDAGGAAGALFTLLMGFDKPFNQAPSLHIGLLVVLWAVYAKHLRGTAARIVLHAW
HCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
FAAIGVSVLTTYQHHMIDVPTGAAVGCFALFLFPLRDAAGRLPGAAAFPSAAGRALARRY
HHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
ALGAALVALAALYCVPRAPCAALAAGWGALALACVASIYWRGAPGAFQKDDAGRLPVSVR
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEH
WLLAPTIAGAFVNSRLWTFRQPAAVRIDERVWIGRTPTTRDVRRHGFTALVDLTAEMPRW
HHHHHHHHHHHHHCCCCEECCCCCEEECCEEEECCCCCHHHHHHCCCHHEEHHHHHCCCC
AATDASLAYVAVPQLDLVAPTPAQLAAAVAALERLHAEGRDVLVCCALGYGRSVLCAAAW
CCCCCCEEEEEECCEECCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHH
VAARRGLGDARDALAAVRAVRPRAVWSDDGVAVLQDWIDRRRVTGGP
HHHHCCCCHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]