| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is 115351302
Identifier: 115351302
GI number: 115351302
Start: 1364616
End: 1365440
Strand: Direct
Name: 115351302
Synonym: Bamb_1249
Alternate gene names: NA
Gene position: 1364616-1365440 (Clockwise)
Preceding gene: 115351301
Following gene: 115351305
Centisome position: 38.37
GC content: 67.76
Gene sequence:
>825_bases ATGGACATCCGGAACGTGAAATCGCGTATCAAGCTGCCCGCGGCGACCCTCGCCGCACTGTCCGCCGTCGCGGCACTCAC CGCGCTCGTCGCGCCATCACCGGCCAATGCCGCCGAGCCGGCGCATCCCGAGCGTCAACTGCAAAAGTTCATCCACGACA CCTACGGCAACTGGCGCGCCGATCGCAAGGGCTGGCAGTCGGACGCCGGTGATTTCATTTACGCGTCGTGCGGATCGCTG CGCGTCGCGACGGCCGACGGCCCGCGCACGCTGCTCGCGATGTGCGGCGAGACCGAGGACGCCGTGCAGAACGGCATGCC GGGGATGGATTCCGATGCGACGCCGGGCACCATCGACCTGTACGTGCTTCGTCCTTCGCAGGACGGCGCGACGCTCGAAC CGGCGCTGAAGAAGACGGGCATCGTGTCCGGCGGCCGCGGCGAGCCGGGCACGGTAAGCATCCAGCGGCTTGGGCCGCAT CTGTTCGGTTTCGTTCTCGGCAACAGCGACTCGCGGCAAGGCTATACGCAAAGCATGCGCTCGATCTGGCTGCCGTACGG AGACGCGCTGGTGCCGGCGGCGGCGCGCATCGACGAAGCGCTCGACAATGCGGAATCGAACGAATGCGCGAACGATCCCG CGCGCTGCGAGGCACGCCGCTTCGCGATCGCGCCGGACACGAGCGTCAACGATAGCGTCTATCCGCTGATCGTCACCGAG ACCGGCACGCGCGGCAATCGCGCGATTCACGCGCGCCATACGGTGAAGTTCGACGCGGCGCGCGGCCGCTACATCGTGCC GAAGGCCGTGCGCGACGGGTATTGA
Upstream 100 bases:
>100_bases CGACGGCTGGGTGCCGACAGCGCGGCTGAAGCGCGACGGTACCGGCATCGCGCCGCGGCAACCGTGATCGCCGGCCTGAC TCACCCAATCGAACTCCGAC
Downstream 100 bases:
>100_bases GCGGCCCGTGCGGGGTACCGCAGAACCGCGGATCCGGGCGGCATCGCGCCGCCCGCCCGTCACACGTACACGTAGCGCAC GAGGTGGAAGAACACCGGCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 274; Mature: 274
Protein sequence:
>274_residues MDIRNVKSRIKLPAATLAALSAVAALTALVAPSPANAAEPAHPERQLQKFIHDTYGNWRADRKGWQSDAGDFIYASCGSL RVATADGPRTLLAMCGETEDAVQNGMPGMDSDATPGTIDLYVLRPSQDGATLEPALKKTGIVSGGRGEPGTVSIQRLGPH LFGFVLGNSDSRQGYTQSMRSIWLPYGDALVPAAARIDEALDNAESNECANDPARCEARRFAIAPDTSVNDSVYPLIVTE TGTRGNRAIHARHTVKFDAARGRYIVPKAVRDGY
Sequences:
>Translated_274_residues MDIRNVKSRIKLPAATLAALSAVAALTALVAPSPANAAEPAHPERQLQKFIHDTYGNWRADRKGWQSDAGDFIYASCGSL RVATADGPRTLLAMCGETEDAVQNGMPGMDSDATPGTIDLYVLRPSQDGATLEPALKKTGIVSGGRGEPGTVSIQRLGPH LFGFVLGNSDSRQGYTQSMRSIWLPYGDALVPAAARIDEALDNAESNECANDPARCEARRFAIAPDTSVNDSVYPLIVTE TGTRGNRAIHARHTVKFDAARGRYIVPKAVRDGY >Mature_274_residues MDIRNVKSRIKLPAATLAALSAVAALTALVAPSPANAAEPAHPERQLQKFIHDTYGNWRADRKGWQSDAGDFIYASCGSL RVATADGPRTLLAMCGETEDAVQNGMPGMDSDATPGTIDLYVLRPSQDGATLEPALKKTGIVSGGRGEPGTVSIQRLGPH LFGFVLGNSDSRQGYTQSMRSIWLPYGDALVPAAARIDEALDNAESNECANDPARCEARRFAIAPDTSVNDSVYPLIVTE TGTRGNRAIHARHTVKFDAARGRYIVPKAVRDGY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29278; Mature: 29278
Theoretical pI: Translated: 7.03; Mature: 7.03
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDIRNVKSRIKLPAATLAALSAVAALTALVAPSPANAAEPAHPERQLQKFIHDTYGNWRA CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCC DRKGWQSDAGDFIYASCGSLRVATADGPRTLLAMCGETEDAVQNGMPGMDSDATPGTIDL CCCCCCCCCCCEEEEECCCEEEEECCCCHHHHHHCCCCHHHHHCCCCCCCCCCCCCEEEE YVLRPSQDGATLEPALKKTGIVSGGRGEPGTVSIQRLGPHLFGFVLGNSDSRQGYTQSMR EEEECCCCCCCCCHHHHHCCCCCCCCCCCCEEEHHHHCCCEEEEEECCCCCCCHHHHHHH SIWLPYGDALVPAAARIDEALDNAESNECANDPARCEARRFAIAPDTSVNDSVYPLIVTE HHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHEEEECCCCCCCCCEEEEEEEE TGTRGNRAIHARHTVKFDAARGRYIVPKAVRDGY CCCCCCEEEEEEEEEEEECCCCCEECCHHHCCCC >Mature Secondary Structure MDIRNVKSRIKLPAATLAALSAVAALTALVAPSPANAAEPAHPERQLQKFIHDTYGNWRA CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCC DRKGWQSDAGDFIYASCGSLRVATADGPRTLLAMCGETEDAVQNGMPGMDSDATPGTIDL CCCCCCCCCCCEEEEECCCEEEEECCCCHHHHHHCCCCHHHHHCCCCCCCCCCCCCEEEE YVLRPSQDGATLEPALKKTGIVSGGRGEPGTVSIQRLGPHLFGFVLGNSDSRQGYTQSMR EEEECCCCCCCCCHHHHHCCCCCCCCCCCCEEEHHHHCCCEEEEEECCCCCCCHHHHHHH SIWLPYGDALVPAAARIDEALDNAESNECANDPARCEARRFAIAPDTSVNDSVYPLIVTE HHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHEEEECCCCCCCCCEEEEEEEE TGTRGNRAIHARHTVKFDAARGRYIVPKAVRDGY CCCCCCEEEEEEEEEEEECCCCCEECCHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA