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The map label for this gene is tcp [H]

Identifier: 115351300

GI number: 115351300

Start: 1361857

End: 1363686

Strand: Direct

Name: tcp [H]

Synonym: Bamb_1247

Alternate gene names: 115351300

Gene position: 1361857-1363686 (Clockwise)

Preceding gene: 115351299

Following gene: 115351301

Centisome position: 38.29

GC content: 69.78

Gene sequence:

>1830_bases
ATGCTGTCATCAATTCGCGCCCGGATCGTGGCGACCTGCGTCGCTATCGTCGTCACGGCGCTCGCCGTCACCGGCGGCCT
CGTGTACCAGGTCGTCAAGCGACACAACGACGAAACCATCGACCGGAACCTCCAGTCCGTCCTGGCCGGCCACGCGCTGG
CGCTCGACGAGTGGGTCGCCGGCCGCGCGCAGCAGACCCAGGCGCTGGCGGATACGCTGGCGGTCGGCGAAGGCGATCCG
CTGCCGGCACTCACGCTGCTCGGCAAGTCGGGCGGGTTCCAGGTGCTGACGCTCGGCCTGCCGGACCACACGGCCTTCTC
GAACATCCCGCTCGCGCCCGGTTACGATCCGACCGCGCGCCCGTGGTACAAGCAGGCGGTTGAGGCCGGCCGGCTCGTCG
TCACCGCGCTGTATCAGGACGCGTCGACCGGCAAGCCGGCGTTTGCATTCGCGGTGCCGATCATGCGCGGCGGCACGCTG
AAGGGCGTGCTGGCGGCGAGTCTCTACATGGAACGCGCGAGCGCGATCGTCGCGTCGATGCACCCGACGCCGGCGAGTTT
CGCGTTTCTCGTCGACCGCGGCGGGCGCCTCATCGCGGGCGCGAAGACCGACCTGATCATGAAACCGGCCGTGCAGTTGT
CGCCGGAACTGACGCCCGAGCACCTCGCGAGCCTGCAGAGCGCGAGCGAGCCGGTGGCGATCGCGGTGGACGGCGTGACC
AAGCTGTTGCGCGCGCAACCGATCGCCGGTACCGACTGGTCGCTCGTGATGGCGCTCGACCGGTCGGACGTGACGGCCGG
CATGCGGGCCGTCGCGACGACGACGCTCGTGGCCATCGTCATCGTGGCCTGTATCGCGGCCGCGCTCGTCGGCGCGCTGA
CGAACGCGGCATTCAAGCGCGTGCTGCTGGTGCGCGATGCGCTGACCGACGTCGCCAGCGGGAGCGGCGACCTGACCAAG
CGGCTGCGGGCGGACGGCAACGACGAGGCCGCGCAGATCGCGCGCGCGTTCAACCTGTTTGCGGAAAAGATTTCGGCGAT
CCTGCTGCAGATCCGCGGGTTCAGCGAATCCGTGAGCGTGGCGAGCGCGGAGATCGCGCAGGGCAATCAGGACCTGTCGG
GCCGCACCGAGCATGCGGCGTCGAGCCTCCAGGAAACCGCGGCGGCGCTCGAGGAGATTGCCGGCACGGCGCGCAACTCG
GCCGACGCGGCGACGCAGGTAAACCGCCTCGCGGAATCGGCGTCGGGCGTGGCGATGCGCGGCGGCGAGGTGGTGAGCCA
GGTGGTCGCGACGATGGGCGAGATCACGGCGGCGTCGAACGAAATCTCGAACATCATCGGCGTGATCGACGGCATCGCGT
TCCAGACCAACATCCTCGCATTGAATGCGGCCGTCGAGGCGGCACGCGCGAACGAGCACGGGCGAGGCTTCGCGGTCGTC
GCGGGCGAGGTGCGCACGCTCGCGCAGCGCAGCGCGCAGGCCGCCAAGGAAATCAAGCAACTGATCCAGGCGTCCGTCGA
CAAGATCGAGGGCGGGTCGGGGCTCGTGCACACGGCGGGCGCCACGATGGACGAGATCGTCGAGGGCGTGCGCGGCATCA
CGAGCGTGATCGCCGAAATGACGGTGGCGGCGAACGAGCAGAGCACCGGCCTCGCGCAGGTGAACCAGGCGGTGTCGCAG
CTCGATCATTCGACGCAGCAGAACGCGGCGCTCGTCGAGGAGTCCGCCGCGGCCGCGGCGCTGTTGCGCGAGCAGGCGGC
GCAGCTCGCGCAAATAGTGGGCGAATTCAAGCTGGCGCAGCCGCAAACGGCCGATACCGCGCGGGTGTGA

Upstream 100 bases:

>100_bases
GACCAGTCTAACCTCAAGTTGCCGCACGGCCGGTCGTTAAATCCGTTTGCGTACTCATTAACTGTCCGATAACAACGCGC
AACCGGAGATCGTCGTCATC

Downstream 100 bases:

>100_bases
CGCGGCGCGCGCCGGGCGAGTGCGATGCGCACTTGCGATGCCGCGCCGTGCGTGTACGCTACGGCCTCGCGGGCATCGCC
CGCGCGTGCGGCAGGGGCCG

Product: methyl-accepting chemotaxis sensory transducer

Products: NA

Alternate protein names: Citrate chemoreceptor protein [H]

Number of amino acids: Translated: 609; Mature: 609

Protein sequence:

>609_residues
MLSSIRARIVATCVAIVVTALAVTGGLVYQVVKRHNDETIDRNLQSVLAGHALALDEWVAGRAQQTQALADTLAVGEGDP
LPALTLLGKSGGFQVLTLGLPDHTAFSNIPLAPGYDPTARPWYKQAVEAGRLVVTALYQDASTGKPAFAFAVPIMRGGTL
KGVLAASLYMERASAIVASMHPTPASFAFLVDRGGRLIAGAKTDLIMKPAVQLSPELTPEHLASLQSASEPVAIAVDGVT
KLLRAQPIAGTDWSLVMALDRSDVTAGMRAVATTTLVAIVIVACIAAALVGALTNAAFKRVLLVRDALTDVASGSGDLTK
RLRADGNDEAAQIARAFNLFAEKISAILLQIRGFSESVSVASAEIAQGNQDLSGRTEHAASSLQETAAALEEIAGTARNS
ADAATQVNRLAESASGVAMRGGEVVSQVVATMGEITAASNEISNIIGVIDGIAFQTNILALNAAVEAARANEHGRGFAVV
AGEVRTLAQRSAQAAKEIKQLIQASVDKIEGGSGLVHTAGATMDEIVEGVRGITSVIAEMTVAANEQSTGLAQVNQAVSQ
LDHSTQQNAALVEESAAAAALLREQAAQLAQIVGEFKLAQPQTADTARV

Sequences:

>Translated_609_residues
MLSSIRARIVATCVAIVVTALAVTGGLVYQVVKRHNDETIDRNLQSVLAGHALALDEWVAGRAQQTQALADTLAVGEGDP
LPALTLLGKSGGFQVLTLGLPDHTAFSNIPLAPGYDPTARPWYKQAVEAGRLVVTALYQDASTGKPAFAFAVPIMRGGTL
KGVLAASLYMERASAIVASMHPTPASFAFLVDRGGRLIAGAKTDLIMKPAVQLSPELTPEHLASLQSASEPVAIAVDGVT
KLLRAQPIAGTDWSLVMALDRSDVTAGMRAVATTTLVAIVIVACIAAALVGALTNAAFKRVLLVRDALTDVASGSGDLTK
RLRADGNDEAAQIARAFNLFAEKISAILLQIRGFSESVSVASAEIAQGNQDLSGRTEHAASSLQETAAALEEIAGTARNS
ADAATQVNRLAESASGVAMRGGEVVSQVVATMGEITAASNEISNIIGVIDGIAFQTNILALNAAVEAARANEHGRGFAVV
AGEVRTLAQRSAQAAKEIKQLIQASVDKIEGGSGLVHTAGATMDEIVEGVRGITSVIAEMTVAANEQSTGLAQVNQAVSQ
LDHSTQQNAALVEESAAAAALLREQAAQLAQIVGEFKLAQPQTADTARV
>Mature_609_residues
MLSSIRARIVATCVAIVVTALAVTGGLVYQVVKRHNDETIDRNLQSVLAGHALALDEWVAGRAQQTQALADTLAVGEGDP
LPALTLLGKSGGFQVLTLGLPDHTAFSNIPLAPGYDPTARPWYKQAVEAGRLVVTALYQDASTGKPAFAFAVPIMRGGTL
KGVLAASLYMERASAIVASMHPTPASFAFLVDRGGRLIAGAKTDLIMKPAVQLSPELTPEHLASLQSASEPVAIAVDGVT
KLLRAQPIAGTDWSLVMALDRSDVTAGMRAVATTTLVAIVIVACIAAALVGALTNAAFKRVLLVRDALTDVASGSGDLTK
RLRADGNDEAAQIARAFNLFAEKISAILLQIRGFSESVSVASAEIAQGNQDLSGRTEHAASSLQETAAALEEIAGTARNS
ADAATQVNRLAESASGVAMRGGEVVSQVVATMGEITAASNEISNIIGVIDGIAFQTNILALNAAVEAARANEHGRGFAVV
AGEVRTLAQRSAQAAKEIKQLIQASVDKIEGGSGLVHTAGATMDEIVEGVRGITSVIAEMTVAANEQSTGLAQVNQAVSQ
LDHSTQQNAALVEESAAAAALLREQAAQLAQIVGEFKLAQPQTADTARV

Specific function: Acts as a receptor for citrate and mediates taxis away from phenol. Also mediates an attractant response to metal-citrate complexes [H]

COG id: COG0840

COG function: function code NT; Methyl-accepting chemotaxis protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 methyl-accepting transducer domain [H]

Homologues:

Organism=Escherichia coli, GI1788195, Length=294, Percent_Identity=53.0612244897959, Blast_Score=254, Evalue=1e-68,
Organism=Escherichia coli, GI2367378, Length=335, Percent_Identity=50.1492537313433, Blast_Score=250, Evalue=1e-67,
Organism=Escherichia coli, GI1787690, Length=330, Percent_Identity=46.3636363636364, Blast_Score=247, Evalue=1e-66,
Organism=Escherichia coli, GI1788194, Length=289, Percent_Identity=48.7889273356401, Blast_Score=237, Evalue=2e-63,
Organism=Escherichia coli, GI1789453, Length=322, Percent_Identity=38.1987577639752, Blast_Score=202, Evalue=6e-53,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004090
- InterPro:   IPR003122
- InterPro:   IPR004091
- InterPro:   IPR004089
- InterPro:   IPR003660 [H]

Pfam domain/function: PF00672 HAMP; PF00015 MCPsignal; PF02203 TarH [H]

EC number: NA

Molecular weight: Translated: 62855; Mature: 62855

Theoretical pI: Translated: 5.12; Mature: 5.12

Prosite motif: PS50885 HAMP ; PS50111 CHEMOTAXIS_TRANSDUC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSSIRARIVATCVAIVVTALAVTGGLVYQVVKRHNDETIDRNLQSVLAGHALALDEWVA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHC
GRAQQTQALADTLAVGEGDPLPALTLLGKSGGFQVLTLGLPDHTAFSNIPLAPGYDPTAR
CCHHHHHHHHHHHHCCCCCCCCHHHEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCC
PWYKQAVEAGRLVVTALYQDASTGKPAFAFAVPIMRGGTLKGVLAASLYMERASAIVASM
HHHHHHHHCCCEEEEEEHHCCCCCCCCCEEEHHHHCCCCHHHHHHHHHHHHHHHHHHHHC
HPTPASFAFLVDRGGRLIAGAKTDLIMKPAVQLSPELTPEHLASLQSASEPVAIAVDGVT
CCCCCHHEEEEECCCEEEECCCCCCEECCCHHCCCCCCHHHHHHHHCCCCCEEEEHHHHH
KLLRAQPIAGTDWSLVMALDRSDVTAGMRAVATTTLVAIVIVACIAAALVGALTNAAFKR
HHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLLVRDALTDVASGSGDLTKRLRADGNDEAAQIARAFNLFAEKISAILLQIRGFSESVSV
HHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
ASAEIAQGNQDLSGRTEHAASSLQETAAALEEIAGTARNSADAATQVNRLAESASGVAMR
HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEC
GGEVVSQVVATMGEITAASNEISNIIGVIDGIAFQTNILALNAAVEAARANEHGRGFAVV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHCCCCCCEEEEE
AGEVRTLAQRSAQAAKEIKQLIQASVDKIEGGSGLVHTAGATMDEIVEGVRGITSVIAEM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHH
TVAANEQSTGLAQVNQAVSQLDHSTQQNAALVEESAAAAALLREQAAQLAQIVGEFKLAQ
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PQTADTARV
CCCCCCCCC
>Mature Secondary Structure
MLSSIRARIVATCVAIVVTALAVTGGLVYQVVKRHNDETIDRNLQSVLAGHALALDEWVA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHC
GRAQQTQALADTLAVGEGDPLPALTLLGKSGGFQVLTLGLPDHTAFSNIPLAPGYDPTAR
CCHHHHHHHHHHHHCCCCCCCCHHHEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCC
PWYKQAVEAGRLVVTALYQDASTGKPAFAFAVPIMRGGTLKGVLAASLYMERASAIVASM
HHHHHHHHCCCEEEEEEHHCCCCCCCCCEEEHHHHCCCCHHHHHHHHHHHHHHHHHHHHC
HPTPASFAFLVDRGGRLIAGAKTDLIMKPAVQLSPELTPEHLASLQSASEPVAIAVDGVT
CCCCCHHEEEEECCCEEEECCCCCCEECCCHHCCCCCCHHHHHHHHCCCCCEEEEHHHHH
KLLRAQPIAGTDWSLVMALDRSDVTAGMRAVATTTLVAIVIVACIAAALVGALTNAAFKR
HHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLLVRDALTDVASGSGDLTKRLRADGNDEAAQIARAFNLFAEKISAILLQIRGFSESVSV
HHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
ASAEIAQGNQDLSGRTEHAASSLQETAAALEEIAGTARNSADAATQVNRLAESASGVAMR
HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEC
GGEVVSQVVATMGEITAASNEISNIIGVIDGIAFQTNILALNAAVEAARANEHGRGFAVV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHCCCCCCEEEEE
AGEVRTLAQRSAQAAKEIKQLIQASVDKIEGGSGLVHTAGATMDEIVEGVRGITSVIAEM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHH
TVAANEQSTGLAQVNQAVSQLDHSTQQNAALVEESAAAAALLREQAAQLAQIVGEFKLAQ
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PQTADTARV
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8419927; 11677609 [H]