| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is 115351242
Identifier: 115351242
GI number: 115351242
Start: 1301631
End: 1302203
Strand: Direct
Name: 115351242
Synonym: Bamb_1189
Alternate gene names: NA
Gene position: 1301631-1302203 (Clockwise)
Preceding gene: 115351241
Following gene: 115351244
Centisome position: 36.6
GC content: 57.07
Gene sequence:
>573_bases ATGTCATTTTTGAGCCTGAGCAAGTGGACCTATAACACCGGGGCAGGTGGTGGCCTGAGTGTTGAGATCGTTATGGCAAC GGGCGGCACGATCGTGCTGACTGACCCTGAGAAGCGCGATCGGAGCTTCTACTACGGTGGCGTTGGCATCGGAATCGGCG CAGGCTTTAAGATCCCGAAAATCAAATTGCCGAAGTTCTCGATACCGGAAATCAAGTTGCCGCCGATCCGGGGCCGCAGC GTCGGGGCGGCGGGCTCCACGTTGGACTTCCCGAGTTACGGCAGCATCTACATGACGAGCGCATTTCGCGGTACAGAGCT GTCACGATCGGATTTTCAGGGTGGAACGATTTATGTCGACGGGTCTCTGTCAGCGCTTTACGGCTGGGCGGGTGATGCAA TGTTGCTTGGCATGAACCCCGCATTGATGGCAGCCGGGCTATCAAACCCCGGCTTCAGCTGGTTGCTCACGCGAGCAATT TCCGAGGCGCCAGCTGTATTGTTCATGCGTGGGCAGACAGTGGGTTTCCAAGCTGGAGGCAGTATCGGGATTCTTGCCGG GTATGTTCACTGA
Upstream 100 bases:
>100_bases GGGGAATGTGGTCTTTTTCGCTGTCTTCGGATTGGGCTTCATCGTTTGTGGGTTGATCAACCTTCCGTCACGACAATAAC CAGATCACTGGGGCGCGGGC
Downstream 100 bases:
>100_bases GCTAGACCAGTGGTTGCGTTCCAGCGCGCGGCGTGCATCGCAAAAGCTCTTTGCCGCTCTCGGCCGACAACACGACCAGT TGAACGTAGCTGTTTGAATG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 190; Mature: 189
Protein sequence:
>190_residues MSFLSLSKWTYNTGAGGGLSVEIVMATGGTIVLTDPEKRDRSFYYGGVGIGIGAGFKIPKIKLPKFSIPEIKLPPIRGRS VGAAGSTLDFPSYGSIYMTSAFRGTELSRSDFQGGTIYVDGSLSALYGWAGDAMLLGMNPALMAAGLSNPGFSWLLTRAI SEAPAVLFMRGQTVGFQAGGSIGILAGYVH
Sequences:
>Translated_190_residues MSFLSLSKWTYNTGAGGGLSVEIVMATGGTIVLTDPEKRDRSFYYGGVGIGIGAGFKIPKIKLPKFSIPEIKLPPIRGRS VGAAGSTLDFPSYGSIYMTSAFRGTELSRSDFQGGTIYVDGSLSALYGWAGDAMLLGMNPALMAAGLSNPGFSWLLTRAI SEAPAVLFMRGQTVGFQAGGSIGILAGYVH >Mature_189_residues SFLSLSKWTYNTGAGGGLSVEIVMATGGTIVLTDPEKRDRSFYYGGVGIGIGAGFKIPKIKLPKFSIPEIKLPPIRGRSV GAAGSTLDFPSYGSIYMTSAFRGTELSRSDFQGGTIYVDGSLSALYGWAGDAMLLGMNPALMAAGLSNPGFSWLLTRAIS EAPAVLFMRGQTVGFQAGGSIGILAGYVH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19847; Mature: 19716
Theoretical pI: Translated: 9.75; Mature: 9.75
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSFLSLSKWTYNTGAGGGLSVEIVMATGGTIVLTDPEKRDRSFYYGGVGIGIGAGFKIPK CCCEECCCEEECCCCCCCEEEEEEEECCCEEEEECCCCCCCCEEECCEEEECCCCCCCCE IKLPKFSIPEIKLPPIRGRSVGAAGSTLDFPSYGSIYMTSAFRGTELSRSDFQGGTIYVD EECCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEEC GSLSALYGWAGDAMLLGMNPALMAAGLSNPGFSWLLTRAISEAPAVLFMRGQTVGFQAGG CCCEEEEECCCCEEEEECCHHHEEECCCCCCHHHHHHHHHCCCCEEEEEECCEEEEECCC SIGILAGYVH CEEEEEEECC >Mature Secondary Structure SFLSLSKWTYNTGAGGGLSVEIVMATGGTIVLTDPEKRDRSFYYGGVGIGIGAGFKIPK CCEECCCEEECCCCCCCEEEEEEEECCCEEEEECCCCCCCCEEECCEEEECCCCCCCCE IKLPKFSIPEIKLPPIRGRSVGAAGSTLDFPSYGSIYMTSAFRGTELSRSDFQGGTIYVD EECCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEEC GSLSALYGWAGDAMLLGMNPALMAAGLSNPGFSWLLTRAISEAPAVLFMRGQTVGFQAGG CCCEEEEECCCCEEEEECCHHHEEECCCCCCHHHHHHHHHCCCCEEEEEECCEEEEECCC SIGILAGYVH CEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA