| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is gloB [H]
Identifier: 115351217
GI number: 115351217
Start: 1271606
End: 1272388
Strand: Direct
Name: gloB [H]
Synonym: Bamb_1164
Alternate gene names: 115351217
Gene position: 1271606-1272388 (Clockwise)
Preceding gene: 115351213
Following gene: 115351218
Centisome position: 35.75
GC content: 69.35
Gene sequence:
>783_bases GTGCCGGCATTCGAAGACAACTACATCTGGCTCGTGTCGGACGGCCGCGATGCGATCGCCGTCGATCCGGGTGAAGCCGC GCCGGTACGCCGTGTTCTTGCGGAACGCGGCTGGCGGTTGACCGCTATTTTACTCACGCACCACCACGCCGACCATGTCG GCGGTGTCGCCGCACTGCGAGATAGCCAACCGGACGATGCGCCGCTCGTGGTTTACGGCCCCGCAGCCGAGGCGATCGGC GTGGTCACCCGGCCGCTCGCGGGCGGCGATCGCGTGATGCTCGACGCACCGGCGCTCGCATTCGACGTGCTCGACGTGCC CGGTCACACGCGCGGCCACATCGCGTATTTTCAGGCGGCCGGCGTAGGCGCGGCCACGCCGCACGTGTTCTGCGGCGACA CGCTGTTCTCGTGCGGCTGCGGCCGCCTGTTCGAAGGCACGCCCGCGCAGATGCTCGCGTCGCTCGACGCGCTCGCGGCG CTGCCCGGCGACACGCGCGTGCATTGCGCACACGAATACACACTGTCGAACATCCGCTTCGCGCTCGCGTGCGAACCGGG CAATGCGGCGCTCGCCGCGTGGCGCGACGACGCGCAGGCGCTGCGCGCGCGCGGCGTGCCGACGCTGCCCACCACGATCG CGCACGAACGTGCGGTCAACCCGTTCATGCGCGCGGACAGCGCGGCGATCCATGCGACGCTCGAAGCCGAGCTGCACGAA ACGGTGCCGGATCGTCTGGCGGCATTCACGCTGATGCGCGAGTGGAAAAATCGTTTCCGATGA
Upstream 100 bases:
>100_bases AGCGGCCGGGCGGCGAGTCGGTCCAGGCGGGCCAGTCTATAATTTGTGGATCGGACATAACGTTGATTGCGCGCCCATGA ACGAGCTGGAATACGTGCCG
Downstream 100 bases:
>100_bases CGCATTCCGGAGGACTCCAAACCTCAGGTGGCGCCTGTAAAAATTGCTCCAAATGTAGGATTTCGCTGAGTTTTCGGTGT TTTTATTGACGTGAAGCACG
Product: hydroxyacylglutathione hydrolase
Products: NA
Alternate protein names: Glyoxalase II; Glx II [H]
Number of amino acids: Translated: 260; Mature: 259
Protein sequence:
>260_residues MPAFEDNYIWLVSDGRDAIAVDPGEAAPVRRVLAERGWRLTAILLTHHHADHVGGVAALRDSQPDDAPLVVYGPAAEAIG VVTRPLAGGDRVMLDAPALAFDVLDVPGHTRGHIAYFQAAGVGAATPHVFCGDTLFSCGCGRLFEGTPAQMLASLDALAA LPGDTRVHCAHEYTLSNIRFALACEPGNAALAAWRDDAQALRARGVPTLPTTIAHERAVNPFMRADSAAIHATLEAELHE TVPDRLAAFTLMREWKNRFR
Sequences:
>Translated_260_residues MPAFEDNYIWLVSDGRDAIAVDPGEAAPVRRVLAERGWRLTAILLTHHHADHVGGVAALRDSQPDDAPLVVYGPAAEAIG VVTRPLAGGDRVMLDAPALAFDVLDVPGHTRGHIAYFQAAGVGAATPHVFCGDTLFSCGCGRLFEGTPAQMLASLDALAA LPGDTRVHCAHEYTLSNIRFALACEPGNAALAAWRDDAQALRARGVPTLPTTIAHERAVNPFMRADSAAIHATLEAELHE TVPDRLAAFTLMREWKNRFR >Mature_259_residues PAFEDNYIWLVSDGRDAIAVDPGEAAPVRRVLAERGWRLTAILLTHHHADHVGGVAALRDSQPDDAPLVVYGPAAEAIGV VTRPLAGGDRVMLDAPALAFDVLDVPGHTRGHIAYFQAAGVGAATPHVFCGDTLFSCGCGRLFEGTPAQMLASLDALAAL PGDTRVHCAHEYTLSNIRFALACEPGNAALAAWRDDAQALRARGVPTLPTTIAHERAVNPFMRADSAAIHATLEAELHET VPDRLAAFTLMREWKNRFR
Specific function: Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid [H]
COG id: COG0491
COG function: function code R; Zn-dependent hydrolases, including glyoxylases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the metallo-beta-lactamase superfamily. Glyoxalase II family [H]
Homologues:
Organism=Homo sapiens, GI94538320, Length=266, Percent_Identity=38.3458646616541, Blast_Score=167, Evalue=1e-41, Organism=Homo sapiens, GI94538322, Length=266, Percent_Identity=38.3458646616541, Blast_Score=166, Evalue=2e-41, Organism=Homo sapiens, GI14150041, Length=226, Percent_Identity=40.2654867256637, Blast_Score=145, Evalue=3e-35, Organism=Homo sapiens, GI116642887, Length=236, Percent_Identity=36.864406779661, Blast_Score=135, Evalue=4e-32, Organism=Homo sapiens, GI21703352, Length=236, Percent_Identity=36.864406779661, Blast_Score=134, Evalue=6e-32, Organism=Homo sapiens, GI46361987, Length=190, Percent_Identity=41.0526315789474, Blast_Score=122, Evalue=3e-28, Organism=Escherichia coli, GI1786406, Length=261, Percent_Identity=43.2950191570881, Blast_Score=195, Evalue=2e-51, Organism=Caenorhabditis elegans, GI17536925, Length=261, Percent_Identity=35.632183908046, Blast_Score=143, Evalue=1e-34, Organism=Saccharomyces cerevisiae, GI6320478, Length=270, Percent_Identity=30, Blast_Score=94, Evalue=2e-20, Organism=Saccharomyces cerevisiae, GI6324614, Length=237, Percent_Identity=29.957805907173, Blast_Score=88, Evalue=1e-18, Organism=Drosophila melanogaster, GI24667711, Length=235, Percent_Identity=40.4255319148936, Blast_Score=166, Evalue=1e-41, Organism=Drosophila melanogaster, GI21356335, Length=234, Percent_Identity=40.5982905982906, Blast_Score=166, Evalue=2e-41, Organism=Drosophila melanogaster, GI24667703, Length=234, Percent_Identity=40.5982905982906, Blast_Score=165, Evalue=2e-41,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001279 - InterPro: IPR017782 [H]
Pfam domain/function: PF00753 Lactamase_B [H]
EC number: =3.1.2.6 [H]
Molecular weight: Translated: 27835; Mature: 27704
Theoretical pI: Translated: 6.07; Mature: 6.07
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPAFEDNYIWLVSDGRDAIAVDPGEAAPVRRVLAERGWRLTAILLTHHHADHVGGVAALR CCCCCCCEEEEEECCCCEEEECCCCCHHHHHHHHHCCCEEEEEEEEECCCHHHCCEEEEC DSQPDDAPLVVYGPAAEAIGVVTRPLAGGDRVMLDAPALAFDVLDVPGHTRGHIAYFQAA CCCCCCCCEEEECCCHHHHHHHCCCCCCCCEEEEECCCEEEEEEECCCCCCCEEEEEEEC GVGAATPHVFCGDTLFSCGCGRLFEGTPAQMLASLDALAALPGDTRVHCAHEYTLSNIRF CCCCCCCCEEECCHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEEEECCEEE ALACEPGNAALAAWRDDAQALRARGVPTLPTTIAHERAVNPFMRADSAAIHATLEAELHE EEEECCCCCEEEEECHHHHHHHHCCCCCCCHHHHHHHHCCHHHHCCCCEEEEEEHHHHHH TVPDRLAAFTLMREWKNRFR HHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure PAFEDNYIWLVSDGRDAIAVDPGEAAPVRRVLAERGWRLTAILLTHHHADHVGGVAALR CCCCCCEEEEEECCCCEEEECCCCCHHHHHHHHHCCCEEEEEEEEECCCHHHCCEEEEC DSQPDDAPLVVYGPAAEAIGVVTRPLAGGDRVMLDAPALAFDVLDVPGHTRGHIAYFQAA CCCCCCCCEEEECCCHHHHHHHCCCCCCCCEEEEECCCEEEEEEECCCCCCCEEEEEEEC GVGAATPHVFCGDTLFSCGCGRLFEGTPAQMLASLDALAALPGDTRVHCAHEYTLSNIRF CCCCCCCCEEECCHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEEEECCEEE ALACEPGNAALAAWRDDAQALRARGVPTLPTTIAHERAVNPFMRADSAAIHATLEAELHE EEEECCCCCEEEEECHHHHHHHHCCCCCCCHHHHHHHHCCHHHHCCCCEEEEEEHHHHHH TVPDRLAAFTLMREWKNRFR HHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA