| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is 115351199
Identifier: 115351199
GI number: 115351199
Start: 1255943
End: 1256710
Strand: Direct
Name: 115351199
Synonym: Bamb_1146
Alternate gene names: NA
Gene position: 1255943-1256710 (Clockwise)
Preceding gene: 115351198
Following gene: 115351200
Centisome position: 35.31
GC content: 70.44
Gene sequence:
>768_bases ATGTTGCAGATGCTCGAAAAAACCGTCGCCCACAACGGGCTCGTCGCGTCGTTCGCGCTGGTCGGCCTGATCATGTGGCT GTCGTCGATCGCGTCGCGCAAGCTCACGTACGGCCGCGTACACGGCTCCGCGATCGCGATCGTGATCGGCCTCGTGCTCG CCTATGTCGGCGGCGCGTTCACCGGCGGCGAGAAGGGGCTCGCCGACGTGCGGCTGTTCGCCGGTGTCGGCCTGATGGGC GGCGCGATGCTGCGCGATTTCGCGATCGTCGCGACCGCGTTCGAAGTGCAGCCGACCGAGGCGCGCAAGGCCGGCCTCGT CGGCGTGGTGTCGCTGCTGCTCGGCACCGTGCTGCCGTTCATCGTCGGCGCGAGCATCGCGCGCGCGTTCGGCTACACCG ATGCGGTCAGCATGACGACGATCGGCGCGGGCGCCGTCACCTACATCGTGGGGCCCGTCACGGGCGCGGCGATCGGCGCG AGCTCCGACGTGATCGCGCTCAGCATCGCGACTGGGCTGGTCAAGGCGATCATCGTGATGGTCGGCACGCCGGTCGCGGC CAACTTCATGGGCCTGAAGACGCCGCGCTCCGCGATGATCTTCGGGGGCCTCGCCGGCACCGTGAGCGGCGTGAGCGCGG GCCTCGCCGCGACCGACCGCCGGCTCGTGCCGTATGGCGCGCTGGTCGCGACGTTCCATACGGGCGTCGGCTGCCTGCTC GGCCCGTCGCTGCTGTTCTTCACGACGCGCGCGCTGGTCGGCGCATAG
Upstream 100 bases:
>100_bases GGATCTGCGCATGCTGCATCGCGGTACTCGTGCGCACCGGGCGCGACGACACGGCCTTCGCGGGCGTGCCGCAATTCGAA GAACAGTGAAGGAGGCCGCC
Downstream 100 bases:
>100_bases CCGCCGCTGACGATTCGGGCGGCCCGCGCTCGGGCGGCCCGCGCGTGCGGCCGGTGTGTGCGGTTTCCGCCGCGCCGAAT CCATCGCGGCGCCCTCTGAG
Product: malonate transporter subunit MadM
Products: NA
Alternate protein names: Malonate/Sodium Symporter MadM Subunit; Malonate Transporter; Malonate Transporter Subunit MadM; MalonateSodium Symporter Subunit MadM; Malonate Transporter-Like Membrane Protein; Facilitator Superfamily Transporter; Malonate Transporter M Subunit; Signal Transduction Histidine Kinase LytS
Number of amino acids: Translated: 255; Mature: 255
Protein sequence:
>255_residues MLQMLEKTVAHNGLVASFALVGLIMWLSSIASRKLTYGRVHGSAIAIVIGLVLAYVGGAFTGGEKGLADVRLFAGVGLMG GAMLRDFAIVATAFEVQPTEARKAGLVGVVSLLLGTVLPFIVGASIARAFGYTDAVSMTTIGAGAVTYIVGPVTGAAIGA SSDVIALSIATGLVKAIIVMVGTPVAANFMGLKTPRSAMIFGGLAGTVSGVSAGLAATDRRLVPYGALVATFHTGVGCLL GPSLLFFTTRALVGA
Sequences:
>Translated_255_residues MLQMLEKTVAHNGLVASFALVGLIMWLSSIASRKLTYGRVHGSAIAIVIGLVLAYVGGAFTGGEKGLADVRLFAGVGLMG GAMLRDFAIVATAFEVQPTEARKAGLVGVVSLLLGTVLPFIVGASIARAFGYTDAVSMTTIGAGAVTYIVGPVTGAAIGA SSDVIALSIATGLVKAIIVMVGTPVAANFMGLKTPRSAMIFGGLAGTVSGVSAGLAATDRRLVPYGALVATFHTGVGCLL GPSLLFFTTRALVGA >Mature_255_residues MLQMLEKTVAHNGLVASFALVGLIMWLSSIASRKLTYGRVHGSAIAIVIGLVLAYVGGAFTGGEKGLADVRLFAGVGLMG GAMLRDFAIVATAFEVQPTEARKAGLVGVVSLLLGTVLPFIVGASIARAFGYTDAVSMTTIGAGAVTYIVGPVTGAAIGA SSDVIALSIATGLVKAIIVMVGTPVAANFMGLKTPRSAMIFGGLAGTVSGVSAGLAATDRRLVPYGALVATFHTGVGCLL GPSLLFFTTRALVGA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25559; Mature: 25559
Theoretical pI: Translated: 10.38; Mature: 10.38
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLQMLEKTVAHNGLVASFALVGLIMWLSSIASRKLTYGRVHGSAIAIVIGLVLAYVGGAF CHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHCHHHHHHHHHHHHHHHCCCC TGGEKGLADVRLFAGVGLMGGAMLRDFAIVATAFEVQPTEARKAGLVGVVSLLLGTVLPF CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHH IVGASIARAFGYTDAVSMTTIGAGAVTYIVGPVTGAAIGASSDVIALSIATGLVKAIIVM HHHHHHHHHHCCCCHHHHHHCCCCHHHHEECCCCCHHCCCCCCCHHHHHHHHHHHHHHHH VGTPVAANFMGLKTPRSAMIFGGLAGTVSGVSAGLAATDRRLVPYGALVATFHTGVGCLL HCCCHHHHHHCCCCCCHHHEECCHHHHHHHHHHCHHHCCCCCCCHHHHHHHHHHCHHHHH GPSLLFFTTRALVGA HHHHHHHHHHHHHCC >Mature Secondary Structure MLQMLEKTVAHNGLVASFALVGLIMWLSSIASRKLTYGRVHGSAIAIVIGLVLAYVGGAF CHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHCHHHHHHHHHHHHHHHCCCC TGGEKGLADVRLFAGVGLMGGAMLRDFAIVATAFEVQPTEARKAGLVGVVSLLLGTVLPF CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHH IVGASIARAFGYTDAVSMTTIGAGAVTYIVGPVTGAAIGASSDVIALSIATGLVKAIIVM HHHHHHHHHHCCCCHHHHHHCCCCHHHHEECCCCCHHCCCCCCCHHHHHHHHHHHHHHHH VGTPVAANFMGLKTPRSAMIFGGLAGTVSGVSAGLAATDRRLVPYGALVATFHTGVGCLL HCCCHHHHHHCCCCCCHHHEECCHHHHHHHHHHCHHHCCCCCCCHHHHHHHHHHCHHHHH GPSLLFFTTRALVGA HHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA