| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is 115351200
Identifier: 115351200
GI number: 115351200
Start: 1256890
End: 1258536
Strand: Direct
Name: 115351200
Synonym: Bamb_1147
Alternate gene names: NA
Gene position: 1256890-1258536 (Clockwise)
Preceding gene: 115351199
Following gene: 115351201
Centisome position: 35.34
GC content: 68.73
Gene sequence:
>1647_bases ATGACGGGATGGAATCACGCGCGGCAAGCGCGCGACGCACGCCTCGCGGCCGGCGCGGCGTACGTGCAGGGCAAGCGGGT CGATGCGCGCGACACCGTCGCGTTGCTCGAAGCGGTGCTGCGGCCCGGCGACCGCGTTTGCCTCGAAGGCGACAACCAGA AACAGGCCGACCTGCTCGCGACGGCGCTCGCCGACGTCGACAGCGCGAAGATCCACGACCTGCACATGGTGCAGTCGGGC GTCGTGCTGCCCGAGCATCTCGACGTGTTCGAGCGCGGGATCGCGAAGCGTCTCGACTTCGCGTATTCGGGCCCGCAGTC GCAGCGGATCGCGAAGCTGCTGTTCGGCGGCAAGATCGCGCTCGGCGCGGTGCACACGTATCTCGAGCTGTTCGCTCGCT ACTTCATCGATCTCACGCCGCAGGTCGCGCTGATCGCGGCGGTCAGCGCCGATCGCGACGGCAACCTGTACACCGGCCCG AACACGGAAGACACGCCGACCGTCGTCGAGGCCACCGCGTTCAAGGACGGCATCGTGATCGCGCAGGTCGACCGCATCGT CGACAAGGTGCCGCGCGTCGACATTCCCGGCGACCGCGTGCATTTCGTCGTCGAGGCCGGCCGGCCGTTCTACGTCGAGC CGCTGTTCACGCGCGACCCGGCCGCGATCACCGAAACGCAGATCCTGACCGCGATGCTCGCGATCAAGGGCATCTACGAA CCGTACGGGATCAAGCGCCTGAACCACGGGATCGGCTTCAACACGGCCGCGATCGAGCTGCTTCTGCCCACCTACGGCGC GAAGCTCGGGCTCAAGGGCAAGGTCTGCACGCACTGGGCGCTCAATCCGCACCCGACGCTGATCCCCGCGATCGAGTCGG GCTGGGTCGAGCAGATTCACTGCTTCGGTTCCGAAGTGGGGATGGACGACTACATCCGCGCGCGCTCCGACGTGTGGTTC ACGGGCCCCGACGGGTCGCTGCGCTCGAACCGCGCGTTCTGCCAGACCGCGGGCCTCTATGCGTGCGACATGTTCATCGG CTCGACGCTGCAGATCGACCTGGCGGGCCATTCGTCGACGGTCACGGCCGAGCGGATCGCCGGCTTCGGCGGCGCGCCGA ACATGGGCAGCGACGCGCGCGGCCGGCGTCATCCGAGCGAGCCGTGGCTGAAGGCCGGCGCGCAAGCCGATCCCGACACG CCGGCGGCGCTCAGGCGCGGCCGCAAGCTGGTCGTGCAGATCGGCGAGACGTTCGGCGACAAGAACGTGCCGATGTTCGT CGAGAAGCTCGACGCGCTGAAGCTCGCCGACAAGCTGCAGCTCGACCTCGCGCCGATCATGGTCTACGGCGACGACGTCA CGCACATCGTCACCGAGGAAGGGATCGCGAACCTGCTGATGTGCCGCGACAAGGATGAGCGCGAGCACGCGATCCGCGGC GTGGCCGGGTATACCGAGGTCGGCCGCGGCCGCGACCGCAGGATGGTCGAGCGGCTGCGCGAGCGCGGCGTGATCCGGCG TCCGGAGGATCTCGGCATCGATCCGCTCGACGCCGACCGCCGCTGGCTCGCCGCGCGTTCGATCAAGGATCTCGTGCATT GGTCGGGCGGCCTCTATGCGCCGCCGGCCCGGTTCCGCAACTGGTGA
Upstream 100 bases:
>100_bases TCCATCGCGGCGCCCTCTGAGTCGCATTCTTCAACATCATCAATCGACGGCGGCGCCAGGCTTAGAATGCCGCTGGACCA TCGAAGCGGGAGAACTGTTC
Downstream 100 bases:
>100_bases GGAAGAGGGCATGGAACAGTTGAACTACCGCTTCACCGCGCGCGAGCGCGCGCAGGGCGAACGGGCCACGGCGCTCGTCG GCGTGGTCGCGTCCGGCAAT
Product: hypothetical protein
Products: NA
Alternate protein names: Alpha Subunit Of Malonate Decarboxylase; Malonate Decarboxylase Subunit Alpha; Malonate Decarboxylase Alpha-Subunit; Subunit Alpha Of Malonate Decarboxylase
Number of amino acids: Translated: 548; Mature: 547
Protein sequence:
>548_residues MTGWNHARQARDARLAAGAAYVQGKRVDARDTVALLEAVLRPGDRVCLEGDNQKQADLLATALADVDSAKIHDLHMVQSG VVLPEHLDVFERGIAKRLDFAYSGPQSQRIAKLLFGGKIALGAVHTYLELFARYFIDLTPQVALIAAVSADRDGNLYTGP NTEDTPTVVEATAFKDGIVIAQVDRIVDKVPRVDIPGDRVHFVVEAGRPFYVEPLFTRDPAAITETQILTAMLAIKGIYE PYGIKRLNHGIGFNTAAIELLLPTYGAKLGLKGKVCTHWALNPHPTLIPAIESGWVEQIHCFGSEVGMDDYIRARSDVWF TGPDGSLRSNRAFCQTAGLYACDMFIGSTLQIDLAGHSSTVTAERIAGFGGAPNMGSDARGRRHPSEPWLKAGAQADPDT PAALRRGRKLVVQIGETFGDKNVPMFVEKLDALKLADKLQLDLAPIMVYGDDVTHIVTEEGIANLLMCRDKDEREHAIRG VAGYTEVGRGRDRRMVERLRERGVIRRPEDLGIDPLDADRRWLAARSIKDLVHWSGGLYAPPARFRNW
Sequences:
>Translated_548_residues MTGWNHARQARDARLAAGAAYVQGKRVDARDTVALLEAVLRPGDRVCLEGDNQKQADLLATALADVDSAKIHDLHMVQSG VVLPEHLDVFERGIAKRLDFAYSGPQSQRIAKLLFGGKIALGAVHTYLELFARYFIDLTPQVALIAAVSADRDGNLYTGP NTEDTPTVVEATAFKDGIVIAQVDRIVDKVPRVDIPGDRVHFVVEAGRPFYVEPLFTRDPAAITETQILTAMLAIKGIYE PYGIKRLNHGIGFNTAAIELLLPTYGAKLGLKGKVCTHWALNPHPTLIPAIESGWVEQIHCFGSEVGMDDYIRARSDVWF TGPDGSLRSNRAFCQTAGLYACDMFIGSTLQIDLAGHSSTVTAERIAGFGGAPNMGSDARGRRHPSEPWLKAGAQADPDT PAALRRGRKLVVQIGETFGDKNVPMFVEKLDALKLADKLQLDLAPIMVYGDDVTHIVTEEGIANLLMCRDKDEREHAIRG VAGYTEVGRGRDRRMVERLRERGVIRRPEDLGIDPLDADRRWLAARSIKDLVHWSGGLYAPPARFRNW >Mature_547_residues TGWNHARQARDARLAAGAAYVQGKRVDARDTVALLEAVLRPGDRVCLEGDNQKQADLLATALADVDSAKIHDLHMVQSGV VLPEHLDVFERGIAKRLDFAYSGPQSQRIAKLLFGGKIALGAVHTYLELFARYFIDLTPQVALIAAVSADRDGNLYTGPN TEDTPTVVEATAFKDGIVIAQVDRIVDKVPRVDIPGDRVHFVVEAGRPFYVEPLFTRDPAAITETQILTAMLAIKGIYEP YGIKRLNHGIGFNTAAIELLLPTYGAKLGLKGKVCTHWALNPHPTLIPAIESGWVEQIHCFGSEVGMDDYIRARSDVWFT GPDGSLRSNRAFCQTAGLYACDMFIGSTLQIDLAGHSSTVTAERIAGFGGAPNMGSDARGRRHPSEPWLKAGAQADPDTP AALRRGRKLVVQIGETFGDKNVPMFVEKLDALKLADKLQLDLAPIMVYGDDVTHIVTEEGIANLLMCRDKDEREHAIRGV AGYTEVGRGRDRRMVERLRERGVIRRPEDLGIDPLDADRRWLAARSIKDLVHWSGGLYAPPARFRNW
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 60207; Mature: 60075
Theoretical pI: Translated: 6.92; Mature: 6.92
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTGWNHARQARDARLAAGAAYVQGKRVDARDTVALLEAVLRPGDRVCLEGDNQKQADLLA CCCCCHHHHHHHHHHHHCHHHHCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHH TALADVDSAKIHDLHMVQSGVVLPEHLDVFERGIAKRLDFAYSGPQSQRIAKLLFGGKIA HHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHH LGAVHTYLELFARYFIDLTPQVALIAAVSADRDGNLYTGPNTEDTPTVVEATAFKDGIVI HHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCEEECCCCCCCCCEEEEECCCCCEEE AQVDRIVDKVPRVDIPGDRVHFVVEAGRPFYVEPLFTRDPAAITETQILTAMLAIKGIYE EHHHHHHHHCCCCCCCCCCEEEEEECCCCEEECEECCCCCCHHHHHHHHHHHHHHHHCCC PYGIKRLNHGIGFNTAAIELLLPTYGAKLGLKGKVCTHWALNPHPTLIPAIESGWVEQIH CCCHHHHHCCCCCCHHHEEEEECCCCCCCCCCCCEEEEECCCCCCCEEECHHCCHHHHHH CFGSEVGMDDYIRARSDVWFTGPDGSLRSNRAFCQTAGLYACDMFIGSTLQIDLAGHSST HHCCCCCCHHHHHCCCCEEEECCCCCCCCCCHHHHHCCCEEEHHHHCCEEEEEECCCCCC VTAERIAGFGGAPNMGSDARGRRHPSEPWLKAGAQADPDTPAALRRGRKLVVQIGETFGD CCHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHCCCEEEEEEHHHCCC KNVPMFVEKLDALKLADKLQLDLAPIMVYGDDVTHIVTEEGIANLLMCRDKDEREHAIRG CCCCHHHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCHHHHHHHH VAGYTEVGRGRDRRMVERLRERGVIRRPEDLGIDPLDADRRWLAARSIKDLVHWSGGLYA HCCHHHHCCCCHHHHHHHHHHCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC PPARFRNW CCHHHCCC >Mature Secondary Structure TGWNHARQARDARLAAGAAYVQGKRVDARDTVALLEAVLRPGDRVCLEGDNQKQADLLA CCCCHHHHHHHHHHHHCHHHHCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHH TALADVDSAKIHDLHMVQSGVVLPEHLDVFERGIAKRLDFAYSGPQSQRIAKLLFGGKIA HHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHH LGAVHTYLELFARYFIDLTPQVALIAAVSADRDGNLYTGPNTEDTPTVVEATAFKDGIVI HHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCEEECCCCCCCCCEEEEECCCCCEEE AQVDRIVDKVPRVDIPGDRVHFVVEAGRPFYVEPLFTRDPAAITETQILTAMLAIKGIYE EHHHHHHHHCCCCCCCCCCEEEEEECCCCEEECEECCCCCCHHHHHHHHHHHHHHHHCCC PYGIKRLNHGIGFNTAAIELLLPTYGAKLGLKGKVCTHWALNPHPTLIPAIESGWVEQIH CCCHHHHHCCCCCCHHHEEEEECCCCCCCCCCCCEEEEECCCCCCCEEECHHCCHHHHHH CFGSEVGMDDYIRARSDVWFTGPDGSLRSNRAFCQTAGLYACDMFIGSTLQIDLAGHSST HHCCCCCCHHHHHCCCCEEEECCCCCCCCCCHHHHHCCCEEEHHHHCCEEEEEECCCCCC VTAERIAGFGGAPNMGSDARGRRHPSEPWLKAGAQADPDTPAALRRGRKLVVQIGETFGD CCHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHCCCEEEEEEHHHCCC KNVPMFVEKLDALKLADKLQLDLAPIMVYGDDVTHIVTEEGIANLLMCRDKDEREHAIRG CCCCHHHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCHHHHHHHH VAGYTEVGRGRDRRMVERLRERGVIRRPEDLGIDPLDADRRWLAARSIKDLVHWSGGLYA HCCHHHHCCCCHHHHHHHHHHCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC PPARFRNW CCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA