Click here to switch to the map view.

The map label for this gene is alkR [H]

Identifier: 115351131

GI number: 115351131

Start: 1171782

End: 1172744

Strand: Direct

Name: alkR [H]

Synonym: Bamb_1077

Alternate gene names: 115351131

Gene position: 1171782-1172744 (Clockwise)

Preceding gene: 115351130

Following gene: 115351141

Centisome position: 32.95

GC content: 69.89

Gene sequence:

>963_bases
ATGACGACCGATCTTCTCAGCGACGTGCTGACCGACCTGCGGGCCGATGCGGTCGTCACCGGGCGCTTCACGCTGAGTGC
GCCGTGGGCGATCCGCAAGCCGGCCGTCGCGGGCGCACCGTTTCGCACCTGTGCCGGCAGCCCGTTCTTCCTGGCGGTTG
CGGGAGCCGCGCCCGTACACGTCGAGCCGGGCGACTTCGTGCTGCTGCCGCACGGCGACGAACACGTGATGGCATCGTCG
CTCGACGAGCCGCCGGTGCTGTTCGATACGCTGATGGCGGACAAGGGCATCCGGCCGCGCTTCGACACGCCGCTCGAATT
CGTCGCGGGCGGCGGCGGCGCGACGAGCGACCTCTATACCGGGATCGTCATTTATCGCGACATCGTGCGCAGCCCGCTGT
TCTCCGTGCTGCCGCCGCTGATTCACGTCCGCGCGAACGACGCGGCCGTCGCGCCGTGGCTCGCGAGCACGCTGCAGAGC
TTCATCGAGGAATCGATGGCGTGCCAGCCCGGCTGGGCCGTGGCCGCGACGCGTCTGGCCGACGTGCTGTTCGTGCAGCT
GTTGCGTGCGCACCTGCAGTCGTCGGCGAATCACACGGGCTGGCTGCGCGGCCTGACCGATGCGCAGATCGGCCGCGCGA
TGGCGCTGATGCACCGCGACCCGCGCCGCGACTGGCAGCTCGCGAGTCTCGCGGCCGAGGCCGGCATGTCGCGCTCGCGC
TTTTGCGCGCGTTTCGCCGAACTGGTCGGCGAGACGCCGATCGGTCACCTGACCGCCTACCGGATGTACCTGGCGAGCGG
CGAGCTCGCGCACGGCAAGCTGCGGCTGATCGAGATCGCCGAGCGGGTCGGCTACACGTCGGAAAAGGCGTTCGCGCGCG
CATTCCATCGCTGGTCGGGGATGGCGCCGCGCCGCTATGCGCGCAACGCGCAGGATCTGTACGACCTCGCACGACATGGA
TGA

Upstream 100 bases:

>100_bases
GCCGGCGGCACCGTCGGCGCCGGCCAGAACCAGGTCGGCGTGATGGCGGGCATCCAGCAGCGCTTCTGAGCGGGCGGCGC
GCACCACGGAGACTCCGACA

Downstream 100 bases:

>100_bases
CGGCGCGTCGCGCTATCGGGTGCCCGCGCTTGCCCGCGGGCTTGCGATTCCTGCAGCGGTCGCGCGCGGGCAGCCGTACG
CTACCGATACGGAGCGGAGC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 320; Mature: 319

Protein sequence:

>320_residues
MTTDLLSDVLTDLRADAVVTGRFTLSAPWAIRKPAVAGAPFRTCAGSPFFLAVAGAAPVHVEPGDFVLLPHGDEHVMASS
LDEPPVLFDTLMADKGIRPRFDTPLEFVAGGGGATSDLYTGIVIYRDIVRSPLFSVLPPLIHVRANDAAVAPWLASTLQS
FIEESMACQPGWAVAATRLADVLFVQLLRAHLQSSANHTGWLRGLTDAQIGRAMALMHRDPRRDWQLASLAAEAGMSRSR
FCARFAELVGETPIGHLTAYRMYLASGELAHGKLRLIEIAERVGYTSEKAFARAFHRWSGMAPRRYARNAQDLYDLARHG

Sequences:

>Translated_320_residues
MTTDLLSDVLTDLRADAVVTGRFTLSAPWAIRKPAVAGAPFRTCAGSPFFLAVAGAAPVHVEPGDFVLLPHGDEHVMASS
LDEPPVLFDTLMADKGIRPRFDTPLEFVAGGGGATSDLYTGIVIYRDIVRSPLFSVLPPLIHVRANDAAVAPWLASTLQS
FIEESMACQPGWAVAATRLADVLFVQLLRAHLQSSANHTGWLRGLTDAQIGRAMALMHRDPRRDWQLASLAAEAGMSRSR
FCARFAELVGETPIGHLTAYRMYLASGELAHGKLRLIEIAERVGYTSEKAFARAFHRWSGMAPRRYARNAQDLYDLARHG
>Mature_319_residues
TTDLLSDVLTDLRADAVVTGRFTLSAPWAIRKPAVAGAPFRTCAGSPFFLAVAGAAPVHVEPGDFVLLPHGDEHVMASSL
DEPPVLFDTLMADKGIRPRFDTPLEFVAGGGGATSDLYTGIVIYRDIVRSPLFSVLPPLIHVRANDAAVAPWLASTLQSF
IEESMACQPGWAVAATRLADVLFVQLLRAHLQSSANHTGWLRGLTDAQIGRAMALMHRDPRRDWQLASLAAEAGMSRSRF
CARFAELVGETPIGHLTAYRMYLASGELAHGKLRLIEIAERVGYTSEKAFARAFHRWSGMAPRRYARNAQDLYDLARHG

Specific function: This protein activates the expression of the alkane 1- monooxygenase AlkM [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786496, Length=168, Percent_Identity=28.5714285714286, Blast_Score=75, Evalue=6e-15,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 34874; Mature: 34743

Theoretical pI: Translated: 7.74; Mature: 7.74

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTDLLSDVLTDLRADAVVTGRFTLSAPWAIRKPAVAGAPFRTCAGSPFFLAVAGAAPVH
CCHHHHHHHHHHHHCCEEEEEEEEEECCCCCCCCCCCCCCHHHHCCCCEEEEEECCCCEE
VEPGDFVLLPHGDEHVMASSLDEPPVLFDTLMADKGIRPRFDTPLEFVAGGGGATSDLYT
ECCCCEEEECCCCCHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCHHHHCCCCCCHHHHHH
GIVIYRDIVRSPLFSVLPPLIHVRANDAAVAPWLASTLQSFIEESMACQPGWAVAATRLA
HHHHHHHHHHHHHHHHCCHHEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
DVLFVQLLRAHLQSSANHTGWLRGLTDAQIGRAMALMHRDPRRDWQLASLAAEAGMSRSR
HHHHHHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHH
FCARFAELVGETPIGHLTAYRMYLASGELAHGKLRLIEIAERVGYTSEKAFARAFHRWSG
HHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCC
MAPRRYARNAQDLYDLARHG
CCCHHHHCCHHHHHHHHHCC
>Mature Secondary Structure 
TTDLLSDVLTDLRADAVVTGRFTLSAPWAIRKPAVAGAPFRTCAGSPFFLAVAGAAPVH
CHHHHHHHHHHHHCCEEEEEEEEEECCCCCCCCCCCCCCHHHHCCCCEEEEEECCCCEE
VEPGDFVLLPHGDEHVMASSLDEPPVLFDTLMADKGIRPRFDTPLEFVAGGGGATSDLYT
ECCCCEEEECCCCCHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCHHHHCCCCCCHHHHHH
GIVIYRDIVRSPLFSVLPPLIHVRANDAAVAPWLASTLQSFIEESMACQPGWAVAATRLA
HHHHHHHHHHHHHHHHCCHHEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
DVLFVQLLRAHLQSSANHTGWLRGLTDAQIGRAMALMHRDPRRDWQLASLAAEAGMSRSR
HHHHHHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHH
FCARFAELVGETPIGHLTAYRMYLASGELAHGKLRLIEIAERVGYTSEKAFARAFHRWSG
HHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCC
MAPRRYARNAQDLYDLARHG
CCCHHHHCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9546151 [H]