| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is astE [H]
Identifier: 115351120
GI number: 115351120
Start: 1158115
End: 1159218
Strand: Direct
Name: astE [H]
Synonym: Bamb_1066
Alternate gene names: 115351120
Gene position: 1158115-1159218 (Clockwise)
Preceding gene: 115351119
Following gene: 115351121
Centisome position: 32.56
GC content: 71.56
Gene sequence:
>1104_bases ATGACTTCCAGCGCTGAGTCCCGCATGCCGGCCGCCGCGCTGCTCGACGACTTCCTCGAGTTCACGCTCGCGGGCGACCC GCCGGCCGTGAAGGACGGCGCGTGCGCGGACGGCGCGGTGCGCTGGCAATGGCTCGGCGACGGGCTGCTCGCGTTCGAGC CGGCCGCACGCGATGCGGCGGGCGATGCCGATGCTGACGCTGCGCGCGCGAGCGTGCTCGTGTCGGCCGGCGTGCATGGC GACGAGACCGCGCCGATCGAGCTGCTGTCGATGCTCGTGCATGATCTCGCGGCGGGCACGCTGCCGCTCGCGTGCCGGCT GCTCGTCGTGCTCGGCAACGTGCCGGCGATGCGCGCGGGCGAGCGCTATCTCGACGACGACCTGAACCGCCTGTTCAGCG GCCGTCACGCGCAGGTGCCGACGAGCCGCGAAGCGCCGCGCGCGGCGCAGCTCGAAGCGGCGGCCGCCGCGTTCTTCGCG GCCGCGCCGGCGGGCGGTGCACGCTGGCACATCGACATGCACACGGCGATTCGCGCATCGGTGTTCGAGCAGTTCGCGCT GCTGCCGCACACGGGCACGCCGCCGACCCGCGCGATGGTCGAATGGCTTGGCGAAGCGCGCATCGCGGCCGTGCTGCTGC ATACCGCGAAGGGCAACACGTATTCGCATTTCACGGCCGAGCACTGTTGCACGCTCGCGTGCACGCTGGAACTCGGCAAG GTGCGGCCGTTTGGCCAGAACGATCTGTCGCGCTTCGCGCCGGCCGACCGCGCGGTGCGCAAGCTCGTGTCGGGCGCGCC CCGTGATGTCGATGCGCGGGGCGGCCATCCGGGGGCGAGCCATGCGCCGTTGCCACGCGTGTTCACCGTGATCGACCAGA TCACGAAGCAGAGCGATGCGCTCGAGCTGTTCGTCGCGGCCGACGTCGCGAACTTCACCGCGTTCGCGCGCGGCACCGTG CTCGCGCAGGACGGCGACTACCGCTATACGGTGAAGCACGACGAGGAGCGCATCGTGTTCCCGAATCCGTCGGTGAAGCC GGGCTTGCGCGCGGGCCTGCTCGTCGTCGACACGACGCGCGACACGCTCGCCGCGCTCGTTTGA
Upstream 100 bases:
>100_bases GACCGTCTCGCCCCGGAAGATCTCGCCGATCCGACGCTGCTCGACGAATCGCGCACGGCGCTCGACGAGCTCACGCAGAT CCTGCGTGTCGGGTCGCTGT
Downstream 100 bases:
>100_bases GCGATGCGCGGTTGCGCGCGGCTGCGGTGATCGGCAGCCCGCGCGTCGTCGCGCCGCATTCGCATTTTGGGTTGACGTCC GCCGGCCGCGCATCGGCCCT
Product: succinylglutamate desuccinylase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 367; Mature: 366
Protein sequence:
>367_residues MTSSAESRMPAAALLDDFLEFTLAGDPPAVKDGACADGAVRWQWLGDGLLAFEPAARDAAGDADADAARASVLVSAGVHG DETAPIELLSMLVHDLAAGTLPLACRLLVVLGNVPAMRAGERYLDDDLNRLFSGRHAQVPTSREAPRAAQLEAAAAAFFA AAPAGGARWHIDMHTAIRASVFEQFALLPHTGTPPTRAMVEWLGEARIAAVLLHTAKGNTYSHFTAEHCCTLACTLELGK VRPFGQNDLSRFAPADRAVRKLVSGAPRDVDARGGHPGASHAPLPRVFTVIDQITKQSDALELFVAADVANFTAFARGTV LAQDGDYRYTVKHDEERIVFPNPSVKPGLRAGLLVVDTTRDTLAALV
Sequences:
>Translated_367_residues MTSSAESRMPAAALLDDFLEFTLAGDPPAVKDGACADGAVRWQWLGDGLLAFEPAARDAAGDADADAARASVLVSAGVHG DETAPIELLSMLVHDLAAGTLPLACRLLVVLGNVPAMRAGERYLDDDLNRLFSGRHAQVPTSREAPRAAQLEAAAAAFFA AAPAGGARWHIDMHTAIRASVFEQFALLPHTGTPPTRAMVEWLGEARIAAVLLHTAKGNTYSHFTAEHCCTLACTLELGK VRPFGQNDLSRFAPADRAVRKLVSGAPRDVDARGGHPGASHAPLPRVFTVIDQITKQSDALELFVAADVANFTAFARGTV LAQDGDYRYTVKHDEERIVFPNPSVKPGLRAGLLVVDTTRDTLAALV >Mature_366_residues TSSAESRMPAAALLDDFLEFTLAGDPPAVKDGACADGAVRWQWLGDGLLAFEPAARDAAGDADADAARASVLVSAGVHGD ETAPIELLSMLVHDLAAGTLPLACRLLVVLGNVPAMRAGERYLDDDLNRLFSGRHAQVPTSREAPRAAQLEAAAAAFFAA APAGGARWHIDMHTAIRASVFEQFALLPHTGTPPTRAMVEWLGEARIAAVLLHTAKGNTYSHFTAEHCCTLACTLELGKV RPFGQNDLSRFAPADRAVRKLVSGAPRDVDARGGHPGASHAPLPRVFTVIDQITKQSDALELFVAADVANFTAFARGTVL AQDGDYRYTVKHDEERIVFPNPSVKPGLRAGLLVVDTTRDTLAALV
Specific function: Transforms N(2)-succinylglutamate into succinate and glutamate [H]
COG id: COG2988
COG function: function code E; Succinylglutamate desuccinylase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the AspA/AstE family. Succinylglutamate desuccinylase subfamily [H]
Homologues:
Organism=Escherichia coli, GI1788040, Length=341, Percent_Identity=42.2287390029325, Blast_Score=276, Evalue=1e-75,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007036 - InterPro: IPR016681 [H]
Pfam domain/function: PF04952 AstE_AspA [H]
EC number: =3.5.1.96 [H]
Molecular weight: Translated: 38895; Mature: 38764
Theoretical pI: Translated: 5.92; Mature: 5.92
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSSAESRMPAAALLDDFLEFTLAGDPPAVKDGACADGAVRWQWLGDGLLAFEPAARDAA CCCCCCCCCCHHHHHHHHHHHEECCCCCCCCCCCCCCCCEEEEEECCCCEEECCCCCCCC GDADADAARASVLVSAGVHGDETAPIELLSMLVHDLAAGTLPLACRLLVVLGNVPAMRAG CCCCCHHHHHHEEEECCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHCC ERYLDDDLNRLFSGRHAQVPTSREAPRAAQLEAAAAAFFAAAPAGGARWHIDMHTAIRAS CHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHH VFEQFALLPHTGTPPTRAMVEWLGEARIAAVLLHTAKGNTYSHFTAEHCCTLACTLELGK HHHHHHHCCCCCCCHHHHHHHHHHHHHEEHHEEECCCCCCCCCCCHHHHEEEEEEEECCC VRPFGQNDLSRFAPADRAVRKLVSGAPRDVDARGGHPGASHAPLPRVFTVIDQITKQSDA CCCCCCCHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC LELFVAADVANFTAFARGTVLAQDGDYRYTVKHDEERIVFPNPSVKPGLRAGLLVVDTTR EEEEEEHHHHHHHHHHCCEEEEECCCEEEEEECCCCEEECCCCCCCCCCCCCEEEEECCH DTLAALV HHHHHCC >Mature Secondary Structure TSSAESRMPAAALLDDFLEFTLAGDPPAVKDGACADGAVRWQWLGDGLLAFEPAARDAA CCCCCCCCCHHHHHHHHHHHEECCCCCCCCCCCCCCCCEEEEEECCCCEEECCCCCCCC GDADADAARASVLVSAGVHGDETAPIELLSMLVHDLAAGTLPLACRLLVVLGNVPAMRAG CCCCCHHHHHHEEEECCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHCC ERYLDDDLNRLFSGRHAQVPTSREAPRAAQLEAAAAAFFAAAPAGGARWHIDMHTAIRAS CHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHH VFEQFALLPHTGTPPTRAMVEWLGEARIAAVLLHTAKGNTYSHFTAEHCCTLACTLELGK HHHHHHHCCCCCCCHHHHHHHHHHHHHEEHHEEECCCCCCCCCCCHHHHEEEEEEEECCC VRPFGQNDLSRFAPADRAVRKLVSGAPRDVDARGGHPGASHAPLPRVFTVIDQITKQSDA CCCCCCCHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC LELFVAADVANFTAFARGTVLAQDGDYRYTVKHDEERIVFPNPSVKPGLRAGLLVVDTTR EEEEEEHHHHHHHHHHCCEEEEECCCEEEEEECCCCEEECCCCCCCCCCCCCEEEEECCH DTLAALV HHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA