| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is 115351107
Identifier: 115351107
GI number: 115351107
Start: 1145369
End: 1145893
Strand: Direct
Name: 115351107
Synonym: Bamb_1053
Alternate gene names: NA
Gene position: 1145369-1145893 (Clockwise)
Preceding gene: 115351106
Following gene: 115351108
Centisome position: 32.2
GC content: 66.1
Gene sequence:
>525_bases ATGCTGGCCGCCGCGCTGGCGCTTGCCGGCTGCGACGACAAGCAAGGCAATCTCGACGTGCAACGCATCAGGGATTTTTT CACCGCGATCAAGCCGGCGCCGCTGCTGCTCAAGGGGCTTAAGGTCGGCGTATCGACCGAAGCCGACGTGCGCGGCACGA TGGGCAAGCCCGACACCGAGCGCACCTTCACCGATGGCTCCAAGCGTCTCGAATATCCGCGCGGCCCGATGGGCAATCAG ACCTGGTTCGTCGATCTCGACGCGAGCGGGCACTACGCGGGCGCCACACAGGTGCTGACCGCCGAGAACTTCGCGAAGGT GCGCCCCGGGATGGACGAGGACGAGGTGCGGCGCCTGCTCGGCAAGCCGGGCGATATCGCGCAGTACCCGCTGAAGCCCG AGACGGTGTGGAGCTGGCGCTGGCTCGAGGATGGCGTGAACACCGACGCGTTCTTCAACGTCCATTTCGGCCCGGACGGG CTCGTCTATACGACTTCGCGCTCCGACATCCTGAAGGGGCGGTGA
Upstream 100 bases:
>100_bases CCGTGTCGCGCTTTTGGCGTTGCGCGGGTATCCTTGGCGCGTGTTTTCTCGACGCGCAATTCCTCAGATGATTTTTCGTT TCCGGCTGCTCCCCGTCACG
Downstream 100 bases:
>100_bases ACCTGCGTCCCGGCGCTGGCGCTATATCGAAAAAGCGACCGGAAAATTGCAAAAAGCCCGCTTCCCTGCGTGTCATCCGA CTGTCAGGAAGCGGGTTTTT
Product: hypothetical protein
Products: NA
Alternate protein names: Lipoprotein Transmembrane
Number of amino acids: Translated: 174; Mature: 174
Protein sequence:
>174_residues MLAAALALAGCDDKQGNLDVQRIRDFFTAIKPAPLLLKGLKVGVSTEADVRGTMGKPDTERTFTDGSKRLEYPRGPMGNQ TWFVDLDASGHYAGATQVLTAENFAKVRPGMDEDEVRRLLGKPGDIAQYPLKPETVWSWRWLEDGVNTDAFFNVHFGPDG LVYTTSRSDILKGR
Sequences:
>Translated_174_residues MLAAALALAGCDDKQGNLDVQRIRDFFTAIKPAPLLLKGLKVGVSTEADVRGTMGKPDTERTFTDGSKRLEYPRGPMGNQ TWFVDLDASGHYAGATQVLTAENFAKVRPGMDEDEVRRLLGKPGDIAQYPLKPETVWSWRWLEDGVNTDAFFNVHFGPDG LVYTTSRSDILKGR >Mature_174_residues MLAAALALAGCDDKQGNLDVQRIRDFFTAIKPAPLLLKGLKVGVSTEADVRGTMGKPDTERTFTDGSKRLEYPRGPMGNQ TWFVDLDASGHYAGATQVLTAENFAKVRPGMDEDEVRRLLGKPGDIAQYPLKPETVWSWRWLEDGVNTDAFFNVHFGPDG LVYTTSRSDILKGR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19204; Mature: 19204
Theoretical pI: Translated: 5.81; Mature: 5.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLAAALALAGCDDKQGNLDVQRIRDFFTAIKPAPLLLKGLKVGVSTEADVRGTMGKPDTE CCHHHEEEECCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCC RTFTDGSKRLEYPRGPMGNQTWFVDLDASGHYAGATQVLTAENFAKVRPGMDEDEVRRLL CCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEECCCHHHHCCCCCHHHHHHHH GKPGDIAQYPLKPETVWSWRWLEDGVNTDAFFNVHFGPDGLVYTTSRSDILKGR CCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCEEEECCCCCCCCCC >Mature Secondary Structure MLAAALALAGCDDKQGNLDVQRIRDFFTAIKPAPLLLKGLKVGVSTEADVRGTMGKPDTE CCHHHEEEECCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCC RTFTDGSKRLEYPRGPMGNQTWFVDLDASGHYAGATQVLTAENFAKVRPGMDEDEVRRLL CCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEECCCHHHHCCCCCHHHHHHHH GKPGDIAQYPLKPETVWSWRWLEDGVNTDAFFNVHFGPDGLVYTTSRSDILKGR CCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCEEEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA