| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is 115351106
Identifier: 115351106
GI number: 115351106
Start: 1144207
End: 1145250
Strand: Direct
Name: 115351106
Synonym: Bamb_1052
Alternate gene names: NA
Gene position: 1144207-1145250 (Clockwise)
Preceding gene: 115351105
Following gene: 115351107
Centisome position: 32.17
GC content: 70.88
Gene sequence:
>1044_bases ATGACCCGGTGGATCAAATGGCTCGGCTGGCCGATCGGCATCGCGATCCTGCTCGCGCTGGGGCTGCACGAAGGCATCGG CGACGTGTCGCGGATGCTCGAGCGCGCCGGCTTCACGCTGCTGTGGCTCGTGCCGTTCCACGCGCTGCCGTTGCTGCTCG ACGCGTATGCGTGGCATCAGCTGCTCGACCGGCGCGCGTCGCTGCCGTTTTTGTGGTGGATCGCGACCGTGCGCGAAGCC GTGAACCGGCTGCTGCCCGTGGTCGGGATCGGCGGCGAGCTGGTCGGGATCCGGATCGCGCGCTGGCAGGTGCCCGACGC GAGCCGCGTGACCGCGTCGGTGATCGTCGAGGTGCTGGTGACGATCGTCGTCCAGTATGCGTTCGCGGCGCTCGGCCTCG TGCTGCTGCTCGCGACCACGCACGACATGGGCGGCGGCACGATCGGCCTGGCGCTGCTGCTGACGCTGCCGCTTCCGGTG CTCGGCGTCGTGCTGATGCGGCGCGGCGGCGTCTTCCACGCGATCGAGCGGTTTGCGGGGCGTCTGCTCGGCGATTCGCA CCGGTTGCTGCAGGGCGTCGACGGCCGCCGGCTCGATGCCGACATCGACGCGCTGATGTCGCGCACGGCGCTGCTGTTCA GTGCGTTCTTCTGGCAGCTGGCCGGCTACGTGCTCGGTGCGCTCGAACTCTACTGGGCGCTCGCGCTGCTCGGGCATCCG GTCTCGATCGGCGGCGCGATCGCGATCGAGGCGATGACGCAGGCCGTGCGGCATGCGGCATTCATGGTGCCGGGCGGCCT CGGCGTGCAGGAGGCGACCGTCGTGCTGCTCGCGCAGATGTTCGGCGTCGATCGCGAGACGGCGCTGTCGCTCGCGCTGG TCAAGCGCGGCCGCGAGGTGCTGTTCGGCTGCGTGGCGCTCGGTTCGTGGCAGCTTGCCGAACTCGTGCGCACGCGGCGC CGCATCCGTGGGCTGCCGGCCGGGTCGGATGATGCACCGCCCGCGCGCCGCGAGTCCGACGCGCACACCGAAACGACGCA TTGA
Upstream 100 bases:
>100_bases AGGCGGCCGGTGTCGCGACCGGCGGGTTTGCGGACGTGTTCGGCCAGCTTGCCGGGCGCAGCGGCACGCGTGCGTCGCGC GAAGCGGGGGCACACTCGTC
Downstream 100 bases:
>100_bases ACACGGGACGGGCCGCGCCCGTGTCGCGCTTTTGGCGTTGCGCGGGTATCCTTGGCGCGTGTTTTCTCGACGCGCAATTC CTCAGATGATTTTTCGTTTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 347; Mature: 346
Protein sequence:
>347_residues MTRWIKWLGWPIGIAILLALGLHEGIGDVSRMLERAGFTLLWLVPFHALPLLLDAYAWHQLLDRRASLPFLWWIATVREA VNRLLPVVGIGGELVGIRIARWQVPDASRVTASVIVEVLVTIVVQYAFAALGLVLLLATTHDMGGGTIGLALLLTLPLPV LGVVLMRRGGVFHAIERFAGRLLGDSHRLLQGVDGRRLDADIDALMSRTALLFSAFFWQLAGYVLGALELYWALALLGHP VSIGGAIAIEAMTQAVRHAAFMVPGGLGVQEATVVLLAQMFGVDRETALSLALVKRGREVLFGCVALGSWQLAELVRTRR RIRGLPAGSDDAPPARRESDAHTETTH
Sequences:
>Translated_347_residues MTRWIKWLGWPIGIAILLALGLHEGIGDVSRMLERAGFTLLWLVPFHALPLLLDAYAWHQLLDRRASLPFLWWIATVREA VNRLLPVVGIGGELVGIRIARWQVPDASRVTASVIVEVLVTIVVQYAFAALGLVLLLATTHDMGGGTIGLALLLTLPLPV LGVVLMRRGGVFHAIERFAGRLLGDSHRLLQGVDGRRLDADIDALMSRTALLFSAFFWQLAGYVLGALELYWALALLGHP VSIGGAIAIEAMTQAVRHAAFMVPGGLGVQEATVVLLAQMFGVDRETALSLALVKRGREVLFGCVALGSWQLAELVRTRR RIRGLPAGSDDAPPARRESDAHTETTH >Mature_346_residues TRWIKWLGWPIGIAILLALGLHEGIGDVSRMLERAGFTLLWLVPFHALPLLLDAYAWHQLLDRRASLPFLWWIATVREAV NRLLPVVGIGGELVGIRIARWQVPDASRVTASVIVEVLVTIVVQYAFAALGLVLLLATTHDMGGGTIGLALLLTLPLPVL GVVLMRRGGVFHAIERFAGRLLGDSHRLLQGVDGRRLDADIDALMSRTALLFSAFFWQLAGYVLGALELYWALALLGHPV SIGGAIAIEAMTQAVRHAAFMVPGGLGVQEATVVLLAQMFGVDRETALSLALVKRGREVLFGCVALGSWQLAELVRTRRR IRGLPAGSDDAPPARRESDAHTETTH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37716; Mature: 37585
Theoretical pI: Translated: 9.62; Mature: 9.62
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRWIKWLGWPIGIAILLALGLHEGIGDVSRMLERAGFTLLWLVPFHALPLLLDAYAWHQ CCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHH LLDRRASLPFLWWIATVREAVNRLLPVVGIGGELVGIRIARWQVPDASRVTASVIVEVLV HHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCHHHHHHHHHHHHHH TIVVQYAFAALGLVLLLATTHDMGGGTIGLALLLTLPLPVLGVVLMRRGGVFHAIERFAG HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH RLLGDSHRLLQGVDGRRLDADIDALMSRTALLFSAFFWQLAGYVLGALELYWALALLGHP HHCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC VSIGGAIAIEAMTQAVRHAAFMVPGGLGVQEATVVLLAQMFGVDRETALSLALVKRGREV CCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCHHH LFGCVALGSWQLAELVRTRRRIRGLPAGSDDAPPARRESDAHTETTH HHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure TRWIKWLGWPIGIAILLALGLHEGIGDVSRMLERAGFTLLWLVPFHALPLLLDAYAWHQ CCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHH LLDRRASLPFLWWIATVREAVNRLLPVVGIGGELVGIRIARWQVPDASRVTASVIVEVLV HHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCHHHHHHHHHHHHHH TIVVQYAFAALGLVLLLATTHDMGGGTIGLALLLTLPLPVLGVVLMRRGGVFHAIERFAG HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH RLLGDSHRLLQGVDGRRLDADIDALMSRTALLFSAFFWQLAGYVLGALELYWALALLGHP HHCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC VSIGGAIAIEAMTQAVRHAAFMVPGGLGVQEATVVLLAQMFGVDRETALSLALVKRGREV CCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCHHH LFGCVALGSWQLAELVRTRRRIRGLPAGSDDAPPARRESDAHTETTH HHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA