| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is 115351058
Identifier: 115351058
GI number: 115351058
Start: 1092251
End: 1092880
Strand: Direct
Name: 115351058
Synonym: Bamb_1004
Alternate gene names: NA
Gene position: 1092251-1092880 (Clockwise)
Preceding gene: 115351057
Following gene: 115351059
Centisome position: 30.71
GC content: 69.68
Gene sequence:
>630_bases ATGGGGAGCATCATGGGGTCGGTCAATAAGCAGTCGCAAGCGTACTCGCGCGGCGAGCGTCTTTCCGCTCTGGTCGACGG TGAGCTGTTCGACGGCCCGGATCACGGGCAGTTTCTGGCTGAGCTCGATCGTGCGGATCGCGCGACGTGGGCCCACTACC ACCTGATCGGCGATGCGCTGCGCTCGGACGAGCTCGCGCTGTCGCCCGCGCTGAGCGTCGCGTTCACCGCGCGCATGTCC GCCGCGCTCGAAAGCGAGCCGCACCTGCTCGCACCGGCCGCCGCGCCGGTCGCGCGCAAGCTGCTGTCGCTGCGCCGCCG TGTCGTGCCCGCTTTCGCGGTGGCCGCCGCGGCCGCCACGCTCACGTGGATCGTCGTTCCGCAACTGCAGACGGCCGGTG CGCCCGGCGCCGTCCAGGTCGCGTCGGCAGGCGCGCCGCAGAGCGGCAACCTGCAGCGCGTGACGGTTGCACAGGCATCG GCGCAGCAGGGCCTGCAGGACGTCAACATCATCCGCGACGCAAGTCTCGACCAATACCTTGAAGCGCACCAGCAATTCGC GCAGCAGCCCGTCGTCACAGGCTCGATGCCGCTGATCCGCGCTGCCGTGACCACCACGCCAGGCCAATAA
Upstream 100 bases:
>100_bases TACGCCCGAAGGCAAGCGCTGGTAAGCGCGACGGGTGTAACGGCGCGGTCAGGGTCTAGTTACGGATAGAGTCGTGAATT CACGACGGGGTGTGTGCAAG
Downstream 100 bases:
>100_bases ACTCGATGCGGACATTGCAGTTGAATCACGCCATCTCCGGATGGAAGCGGCTGCCGGCCCTCCTGCTTTGCGCAGCCGCC CTGTTGTCCGTTCAATCCCT
Product: anti sigma-E protein, RseA
Products: NA
Alternate protein names: Sigma Factor Negative Regulatory Protein RseA Family; Sigma Factor AlgU Regulatory Protein MucA; Anti Sigma-E Protein RseA Family Protein
Number of amino acids: Translated: 209; Mature: 208
Protein sequence:
>209_residues MGSIMGSVNKQSQAYSRGERLSALVDGELFDGPDHGQFLAELDRADRATWAHYHLIGDALRSDELALSPALSVAFTARMS AALESEPHLLAPAAAPVARKLLSLRRRVVPAFAVAAAAATLTWIVVPQLQTAGAPGAVQVASAGAPQSGNLQRVTVAQAS AQQGLQDVNIIRDASLDQYLEAHQQFAQQPVVTGSMPLIRAAVTTTPGQ
Sequences:
>Translated_209_residues MGSIMGSVNKQSQAYSRGERLSALVDGELFDGPDHGQFLAELDRADRATWAHYHLIGDALRSDELALSPALSVAFTARMS AALESEPHLLAPAAAPVARKLLSLRRRVVPAFAVAAAAATLTWIVVPQLQTAGAPGAVQVASAGAPQSGNLQRVTVAQAS AQQGLQDVNIIRDASLDQYLEAHQQFAQQPVVTGSMPLIRAAVTTTPGQ >Mature_208_residues GSIMGSVNKQSQAYSRGERLSALVDGELFDGPDHGQFLAELDRADRATWAHYHLIGDALRSDELALSPALSVAFTARMSA ALESEPHLLAPAAAPVARKLLSLRRRVVPAFAVAAAAATLTWIVVPQLQTAGAPGAVQVASAGAPQSGNLQRVTVAQASA QQGLQDVNIIRDASLDQYLEAHQQFAQQPVVTGSMPLIRAAVTTTPGQ
Specific function: Unknown
COG id: COG3073
COG function: function code T; Negative regulator of sigma E activity
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21924; Mature: 21793
Theoretical pI: Translated: 6.68; Mature: 6.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGSIMGSVNKQSQAYSRGERLSALVDGELFDGPDHGQFLAELDRADRATWAHYHLIGDAL CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHH RSDELALSPALSVAFTARMSAALESEPHLLAPAAAPVARKLLSLRRRVVPAFAVAAAAAT CCCCHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHH LTWIVVPQLQTAGAPGAVQVASAGAPQSGNLQRVTVAQASAQQGLQDVNIIRDASLDQYL HHHEEEECHHCCCCCCCEEEECCCCCCCCCEEEEHEEHHHHHCCHHHHHHHHHCCHHHHH EAHQQFAQQPVVTGSMPLIRAAVTTTPGQ HHHHHHHHCCCCCCCCHHHHHHCCCCCCC >Mature Secondary Structure GSIMGSVNKQSQAYSRGERLSALVDGELFDGPDHGQFLAELDRADRATWAHYHLIGDAL CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHH RSDELALSPALSVAFTARMSAALESEPHLLAPAAAPVARKLLSLRRRVVPAFAVAAAAAT CCCCHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHH LTWIVVPQLQTAGAPGAVQVASAGAPQSGNLQRVTVAQASAQQGLQDVNIIRDASLDQYL HHHEEEECHHCCCCCCCEEEECCCCCCCCCEEEEHEEHHHHHCCHHHHHHHHHCCHHHHH EAHQQFAQQPVVTGSMPLIRAAVTTTPGQ HHHHHHHHCCCCCCCCHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA