Definition Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence.
Accession NC_008390
Length 3,556,545

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The map label for this gene is 115351058

Identifier: 115351058

GI number: 115351058

Start: 1092251

End: 1092880

Strand: Direct

Name: 115351058

Synonym: Bamb_1004

Alternate gene names: NA

Gene position: 1092251-1092880 (Clockwise)

Preceding gene: 115351057

Following gene: 115351059

Centisome position: 30.71

GC content: 69.68

Gene sequence:

>630_bases
ATGGGGAGCATCATGGGGTCGGTCAATAAGCAGTCGCAAGCGTACTCGCGCGGCGAGCGTCTTTCCGCTCTGGTCGACGG
TGAGCTGTTCGACGGCCCGGATCACGGGCAGTTTCTGGCTGAGCTCGATCGTGCGGATCGCGCGACGTGGGCCCACTACC
ACCTGATCGGCGATGCGCTGCGCTCGGACGAGCTCGCGCTGTCGCCCGCGCTGAGCGTCGCGTTCACCGCGCGCATGTCC
GCCGCGCTCGAAAGCGAGCCGCACCTGCTCGCACCGGCCGCCGCGCCGGTCGCGCGCAAGCTGCTGTCGCTGCGCCGCCG
TGTCGTGCCCGCTTTCGCGGTGGCCGCCGCGGCCGCCACGCTCACGTGGATCGTCGTTCCGCAACTGCAGACGGCCGGTG
CGCCCGGCGCCGTCCAGGTCGCGTCGGCAGGCGCGCCGCAGAGCGGCAACCTGCAGCGCGTGACGGTTGCACAGGCATCG
GCGCAGCAGGGCCTGCAGGACGTCAACATCATCCGCGACGCAAGTCTCGACCAATACCTTGAAGCGCACCAGCAATTCGC
GCAGCAGCCCGTCGTCACAGGCTCGATGCCGCTGATCCGCGCTGCCGTGACCACCACGCCAGGCCAATAA

Upstream 100 bases:

>100_bases
TACGCCCGAAGGCAAGCGCTGGTAAGCGCGACGGGTGTAACGGCGCGGTCAGGGTCTAGTTACGGATAGAGTCGTGAATT
CACGACGGGGTGTGTGCAAG

Downstream 100 bases:

>100_bases
ACTCGATGCGGACATTGCAGTTGAATCACGCCATCTCCGGATGGAAGCGGCTGCCGGCCCTCCTGCTTTGCGCAGCCGCC
CTGTTGTCCGTTCAATCCCT

Product: anti sigma-E protein, RseA

Products: NA

Alternate protein names: Sigma Factor Negative Regulatory Protein RseA Family; Sigma Factor AlgU Regulatory Protein MucA; Anti Sigma-E Protein RseA Family Protein

Number of amino acids: Translated: 209; Mature: 208

Protein sequence:

>209_residues
MGSIMGSVNKQSQAYSRGERLSALVDGELFDGPDHGQFLAELDRADRATWAHYHLIGDALRSDELALSPALSVAFTARMS
AALESEPHLLAPAAAPVARKLLSLRRRVVPAFAVAAAAATLTWIVVPQLQTAGAPGAVQVASAGAPQSGNLQRVTVAQAS
AQQGLQDVNIIRDASLDQYLEAHQQFAQQPVVTGSMPLIRAAVTTTPGQ

Sequences:

>Translated_209_residues
MGSIMGSVNKQSQAYSRGERLSALVDGELFDGPDHGQFLAELDRADRATWAHYHLIGDALRSDELALSPALSVAFTARMS
AALESEPHLLAPAAAPVARKLLSLRRRVVPAFAVAAAAATLTWIVVPQLQTAGAPGAVQVASAGAPQSGNLQRVTVAQAS
AQQGLQDVNIIRDASLDQYLEAHQQFAQQPVVTGSMPLIRAAVTTTPGQ
>Mature_208_residues
GSIMGSVNKQSQAYSRGERLSALVDGELFDGPDHGQFLAELDRADRATWAHYHLIGDALRSDELALSPALSVAFTARMSA
ALESEPHLLAPAAAPVARKLLSLRRRVVPAFAVAAAAATLTWIVVPQLQTAGAPGAVQVASAGAPQSGNLQRVTVAQASA
QQGLQDVNIIRDASLDQYLEAHQQFAQQPVVTGSMPLIRAAVTTTPGQ

Specific function: Unknown

COG id: COG3073

COG function: function code T; Negative regulator of sigma E activity

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21924; Mature: 21793

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGSIMGSVNKQSQAYSRGERLSALVDGELFDGPDHGQFLAELDRADRATWAHYHLIGDAL
CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHH
RSDELALSPALSVAFTARMSAALESEPHLLAPAAAPVARKLLSLRRRVVPAFAVAAAAAT
CCCCHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTWIVVPQLQTAGAPGAVQVASAGAPQSGNLQRVTVAQASAQQGLQDVNIIRDASLDQYL
HHHEEEECHHCCCCCCCEEEECCCCCCCCCEEEEHEEHHHHHCCHHHHHHHHHCCHHHHH
EAHQQFAQQPVVTGSMPLIRAAVTTTPGQ
HHHHHHHHCCCCCCCCHHHHHHCCCCCCC
>Mature Secondary Structure 
GSIMGSVNKQSQAYSRGERLSALVDGELFDGPDHGQFLAELDRADRATWAHYHLIGDAL
CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHH
RSDELALSPALSVAFTARMSAALESEPHLLAPAAAPVARKLLSLRRRVVPAFAVAAAAAT
CCCCHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTWIVVPQLQTAGAPGAVQVASAGAPQSGNLQRVTVAQASAQQGLQDVNIIRDASLDQYL
HHHEEEECHHCCCCCCCEEEECCCCCCCCCEEEEHEEHHHHHCCHHHHHHHHHCCHHHHH
EAHQQFAQQPVVTGSMPLIRAAVTTTPGQ
HHHHHHHHCCCCCCCCHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA