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The map label for this gene is rpoE [H]

Identifier: 115351057

GI number: 115351057

Start: 1091576

End: 1092175

Strand: Direct

Name: rpoE [H]

Synonym: Bamb_1003

Alternate gene names: 115351057

Gene position: 1091576-1092175 (Clockwise)

Preceding gene: 115351056

Following gene: 115351058

Centisome position: 30.69

GC content: 60.17

Gene sequence:

>600_bases
GTGAGTGAAAAAGAAATCGATCAGGCTCTGGTCGAGCGCGTACAGAAAGGCGACAAGGCGGCGTTCGAACTCCTGGTCTC
CAAATACCACCGCAAGATCATTCGGCTGATCTCGCGCCTCGTGCGGGATCCCGCCGAGGTCGAGGATGTGGCCCAGGATG
CGTTCATCAAGGCGTATCGTGCGTTGCCGCAGTTCCGCGGCGAGTCGGCGTTCTACACGTGGTTGTACCGGATTGCCGTC
AATACGGCGAAGAACTACCTTGCGACGCAGGGCCGCCGGGCACCGACCTCCACGGAGGCCGATGCCGAGGAAGCGGAAAC
TTTCTCCGACGCAGACCAACTAAGGGATATCAACACGCCTGAGTCGATGTTGATGAGCAAGCAGATTGCCGAGACGGTCA
ACGCTGCAATGGCCGTCCTGCCCGAAGAGTTGCGCCAGGCGATTACGCTGCGTGAGATCGAGGGCCTGAGCTACGAAGAG
ATCGCGGAAATGATGGATTGTCCGATCGGGACGGTCCGGTCGCGGATCTTCCGGGCGCGCGAGGCAATCGCTGCTAAATT
GCGTCCGCTGCTCGATACGCCCGAAGGCAAGCGCTGGTAA

Upstream 100 bases:

>100_bases
CGGGCATGACGGCGGCTTGGTTACCTACCGTAACCAGCGGCCGGCGCCGGAACGCTACAATAACGCTCCGCGTTGCATCC
CTAGTTAACGGATTTGTCAG

Downstream 100 bases:

>100_bases
GCGCGACGGGTGTAACGGCGCGGTCAGGGTCTAGTTACGGATAGAGTCGTGAATTCACGACGGGGTGTGTGCAAGATGGG
GAGCATCATGGGGTCGGTCA

Product: RNA polymerase sigma factor RpoE

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 199; Mature: 198

Protein sequence:

>199_residues
MSEKEIDQALVERVQKGDKAAFELLVSKYHRKIIRLISRLVRDPAEVEDVAQDAFIKAYRALPQFRGESAFYTWLYRIAV
NTAKNYLATQGRRAPTSTEADAEEAETFSDADQLRDINTPESMLMSKQIAETVNAAMAVLPEELRQAITLREIEGLSYEE
IAEMMDCPIGTVRSRIFRAREAIAAKLRPLLDTPEGKRW

Sequences:

>Translated_199_residues
MSEKEIDQALVERVQKGDKAAFELLVSKYHRKIIRLISRLVRDPAEVEDVAQDAFIKAYRALPQFRGESAFYTWLYRIAV
NTAKNYLATQGRRAPTSTEADAEEAETFSDADQLRDINTPESMLMSKQIAETVNAAMAVLPEELRQAITLREIEGLSYEE
IAEMMDCPIGTVRSRIFRAREAIAAKLRPLLDTPEGKRW
>Mature_198_residues
SEKEIDQALVERVQKGDKAAFELLVSKYHRKIIRLISRLVRDPAEVEDVAQDAFIKAYRALPQFRGESAFYTWLYRIAVN
TAKNYLATQGRRAPTSTEADAEEAETFSDADQLRDINTPESMLMSKQIAETVNAAMAVLPEELRQAITLREIEGLSYEEI
AEMMDCPIGTVRSRIFRAREAIAAKLRPLLDTPEGKRW

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=191, Percent_Identity=61.7801047120419, Blast_Score=239, Evalue=1e-64,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR014286
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 22638; Mature: 22507

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: PS01063 SIGMA70_ECF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEKEIDQALVERVQKGDKAAFELLVSKYHRKIIRLISRLVRDPAEVEDVAQDAFIKAYR
CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
ALPQFRGESAFYTWLYRIAVNTAKNYLATQGRRAPTSTEADAEEAETFSDADQLRDINTP
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCH
ESMLMSKQIAETVNAAMAVLPEELRQAITLREIEGLSYEEIAEMMDCPIGTVRSRIFRAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHH
EAIAAKLRPLLDTPEGKRW
HHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
SEKEIDQALVERVQKGDKAAFELLVSKYHRKIIRLISRLVRDPAEVEDVAQDAFIKAYR
CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
ALPQFRGESAFYTWLYRIAVNTAKNYLATQGRRAPTSTEADAEEAETFSDADQLRDINTP
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCH
ESMLMSKQIAETVNAAMAVLPEELRQAITLREIEGLSYEEIAEMMDCPIGTVRSRIFRAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHH
EAIAAKLRPLLDTPEGKRW
HHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]