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The map label for this gene is vdlD [H]

Identifier: 115351019

GI number: 115351019

Start: 1056118

End: 1056630

Strand: Direct

Name: vdlD [H]

Synonym: Bamb_0965

Alternate gene names: 115351019

Gene position: 1056118-1056630 (Clockwise)

Preceding gene: 115351018

Following gene: 115351023

Centisome position: 29.7

GC content: 66.28

Gene sequence:

>513_bases
ATGTCCCCACAGTCCCCCGTGCCGGCCGCCCTGGACCGCACCGAAACCGTATTCCGCTTCCTCGCCGAGCCGTCGTCCGT
GAACTTTGGCGGCAAGGTGCACGGCGGCGCGCTGATGAAGTGGATCGACGAAGTCGCGTATGCATGCGCGGCAGTCTGGT
CGAGCCGCTATTGCGTGACGGTCAGCGTCGGCAACATCCGCTTCCAGCGTCCGATCCTCGTCGGCAACCTGGTCGAGCTG
AAGGCGCGCGTCGTCGCGACGGGCCGCACCAGCATGCACATCCATGTGTCCGTACATGCCGGCGATCCGAAGGGGGGCGT
GCTGCGTCAGACGACCGACTGTCTCGTCGTGTTCGTCGCGGTCGACGAGAACGGCAACCCGGTGCCGGTGCCGCCGTTCG
TGCCCGAGACCGACGAGCAGAAGATCCTCGCGAAATATGCGGCCGACGTGCGCGCCGCGCTCGACAAGATCGTCGAGATG
AAGCCCGAGGAAGTGGCGAAGGGCACCGTCTGA

Upstream 100 bases:

>100_bases
CGCGTGCGGTCGCGACAAGGCGGCGGCCCCGGCCACGGGTTGCCGCGGTGCAACGTATAATGCGCCGATTGCAGTACCCC
CGCCGCCTGGAGTTACCACG

Downstream 100 bases:

>100_bases
CGGCAACGGGCGCAGCGTTCGCGCCGCGCCCGTCCCGTCATCGCGTCAGCCGCGATCACCGCGATCCGATCATCTCTTCG
GGTCGCACCCACGCATCGAA

Product: thioesterase superfamily protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 170; Mature: 169

Protein sequence:

>170_residues
MSPQSPVPAALDRTETVFRFLAEPSSVNFGGKVHGGALMKWIDEVAYACAAVWSSRYCVTVSVGNIRFQRPILVGNLVEL
KARVVATGRTSMHIHVSVHAGDPKGGVLRQTTDCLVVFVAVDENGNPVPVPPFVPETDEQKILAKYAADVRAALDKIVEM
KPEEVAKGTV

Sequences:

>Translated_170_residues
MSPQSPVPAALDRTETVFRFLAEPSSVNFGGKVHGGALMKWIDEVAYACAAVWSSRYCVTVSVGNIRFQRPILVGNLVEL
KARVVATGRTSMHIHVSVHAGDPKGGVLRQTTDCLVVFVAVDENGNPVPVPPFVPETDEQKILAKYAADVRAALDKIVEM
KPEEVAKGTV
>Mature_169_residues
SPQSPVPAALDRTETVFRFLAEPSSVNFGGKVHGGALMKWIDEVAYACAAVWSSRYCVTVSVGNIRFQRPILVGNLVELK
ARVVATGRTSMHIHVSVHAGDPKGGVLRQTTDCLVVFVAVDENGNPVPVPPFVPETDEQKILAKYAADVRAALDKIVEMK
PEEVAKGTV

Specific function: Unknown

COG id: COG1607

COG function: function code I; Acyl-CoA hydrolase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl coenzyme A hydrolase family [H]

Homologues:

Organism=Homo sapiens, GI32528284, Length=140, Percent_Identity=32.8571428571429, Blast_Score=71, Evalue=5e-13,
Organism=Homo sapiens, GI75709208, Length=140, Percent_Identity=32.8571428571429, Blast_Score=71, Evalue=5e-13,
Organism=Homo sapiens, GI32528286, Length=140, Percent_Identity=32.8571428571429, Blast_Score=71, Evalue=5e-13,
Organism=Homo sapiens, GI32528282, Length=140, Percent_Identity=32.8571428571429, Blast_Score=70, Evalue=7e-13,
Organism=Escherichia coli, GI1787506, Length=135, Percent_Identity=34.8148148148148, Blast_Score=60, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006683 [H]

Pfam domain/function: PF03061 4HBT [H]

EC number: 3.1.2.- [C]

Molecular weight: Translated: 18310; Mature: 18179

Theoretical pI: Translated: 7.51; Mature: 7.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPQSPVPAALDRTETVFRFLAEPSSVNFGGKVHGGALMKWIDEVAYACAAVWSSRYCVT
CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHCCCCEEE
VSVGNIRFQRPILVGNLVELKARVVATGRTSMHIHVSVHAGDPKGGVLRQTTDCLVVFVA
EEECCEEEECCEEECHHHHHEEEEEEECCCEEEEEEEEECCCCCCCEEEECCCEEEEEEE
VDENGNPVPVPPFVPETDEQKILAKYAADVRAALDKIVEMKPEEVAKGTV
ECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCC
>Mature Secondary Structure 
SPQSPVPAALDRTETVFRFLAEPSSVNFGGKVHGGALMKWIDEVAYACAAVWSSRYCVT
CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHCCCCEEE
VSVGNIRFQRPILVGNLVELKARVVATGRTSMHIHVSVHAGDPKGGVLRQTTDCLVVFVA
EEECCEEEECCEEECHHHHHEEEEEEECCCEEEEEEEEECCCCCCCEEEECCCEEEEEEE
VDENGNPVPVPPFVPETDEQKILAKYAADVRAALDKIVEMKPEEVAKGTV
ECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on ester bonds; Thiolester hydrolases [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9923682 [H]