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The map label for this gene is cobD [H]

Identifier: 115351004

GI number: 115351004

Start: 1040951

End: 1041889

Strand: Direct

Name: cobD [H]

Synonym: Bamb_0950

Alternate gene names: 115351004

Gene position: 1040951-1041889 (Clockwise)

Preceding gene: 115351003

Following gene: 115351008

Centisome position: 29.27

GC content: 64.0

Gene sequence:

>939_bases
ATGACTTTCTTTTCGGTTCTCCTCGCTCTCATCATCGAACAGGTCCGCGCGTTGTCGCCAAGCAATCCGGTGTTCGCGCT
GTTCCAGTTTCATGCGGAAACCGTCGCGCATGGCCTCGACGCCGGCAAGCAAAAGCATGGCGTGCTCGCCTGGCTCGCAG
TCGTGCTGCCGTGGGTGCTGATCGTCGCGCTGATCTACTTCCTGCTGTACAAGGTGAGCTTCGTGCTCGCGTTCATCTGG
AACGTCGTCGTCGTGTATTTCACGCTCGGCTTCCGCCAGTTCAGCCACTACTTCACCGATATCCATCTCGCGCTCAACAA
CGATGACGTGCCGCGCGCCCGCGAAATCCTGCATGAATGGACGGGCCTCGACACGGTCGACATGCCGGTCGGTGAAATCG
TCCGCCATACGCTGATTCATGCGGTCGTTGCGTCGCATCGCCACGTGTTCGGCGTGTTCTTCTGGTATGTGCTGCCGATC
GGTCCGGCAGGCGCCGTGCTGTATCGCATCTCCGAATATCTCGCGCGCAGCTGGTCGACGCCGGGCGACGATCGCACGGC
CGCGTTCTCGACGTTCGCGCAGCGGGCGTTCTTCGTGATCGACTGGATTCCGTCGCGCTTGACCGCGCTCGGCTTCGCGA
TCGTCGGCAACTTCGAGGATGCGATCTACGCGTGGCGCAATCACACGCGGCAATGGCCCGACCCGAACGACGGCGTGCTG
CTCGCGGCCGGTAGCGGCGCACTTGGCGCACGCCTCGCAGGGCCGCTCGCGGAACCGTCGAGCCTCGACGCGCTGGCGGT
CGGCGACAGCGGTCCGTTGACGGTCGGCGACGATTGCACGCCGCGCACGCTGCAGTCGGCGGTCGGCCTGGTGTGGCGCG
CCGTGATCCTGTGGATGATCCTGCTGTTGATGCTGACGCTGGCGGTCTGGGTATCGTGA

Upstream 100 bases:

>100_bases
ACGCGGCCGGCTCGCGGGCCGTCGCGCCAGCAGCCATCCGTCGCTTACGCTGTGCTATCGTTATGCAAAAAATGACATAA
CTCGGAAGACGGCGCCACGC

Downstream 100 bases:

>100_bases
CGCGCTTGCGCGGCGCCCGATGAAATGACAAGGCCGGCTTAATGCCGGCCTTTTTGCTGTGCGTCGGTCAATCCGGTGAA
TCCGGTCAGTCGTCGAGCGG

Product: CobD/CbiB family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 312; Mature: 311

Protein sequence:

>312_residues
MTFFSVLLALIIEQVRALSPSNPVFALFQFHAETVAHGLDAGKQKHGVLAWLAVVLPWVLIVALIYFLLYKVSFVLAFIW
NVVVVYFTLGFRQFSHYFTDIHLALNNDDVPRAREILHEWTGLDTVDMPVGEIVRHTLIHAVVASHRHVFGVFFWYVLPI
GPAGAVLYRISEYLARSWSTPGDDRTAAFSTFAQRAFFVIDWIPSRLTALGFAIVGNFEDAIYAWRNHTRQWPDPNDGVL
LAAGSGALGARLAGPLAEPSSLDALAVGDSGPLTVGDDCTPRTLQSAVGLVWRAVILWMILLLMLTLAVWVS

Sequences:

>Translated_312_residues
MTFFSVLLALIIEQVRALSPSNPVFALFQFHAETVAHGLDAGKQKHGVLAWLAVVLPWVLIVALIYFLLYKVSFVLAFIW
NVVVVYFTLGFRQFSHYFTDIHLALNNDDVPRAREILHEWTGLDTVDMPVGEIVRHTLIHAVVASHRHVFGVFFWYVLPI
GPAGAVLYRISEYLARSWSTPGDDRTAAFSTFAQRAFFVIDWIPSRLTALGFAIVGNFEDAIYAWRNHTRQWPDPNDGVL
LAAGSGALGARLAGPLAEPSSLDALAVGDSGPLTVGDDCTPRTLQSAVGLVWRAVILWMILLLMLTLAVWVS
>Mature_311_residues
TFFSVLLALIIEQVRALSPSNPVFALFQFHAETVAHGLDAGKQKHGVLAWLAVVLPWVLIVALIYFLLYKVSFVLAFIWN
VVVVYFTLGFRQFSHYFTDIHLALNNDDVPRAREILHEWTGLDTVDMPVGEIVRHTLIHAVVASHRHVFGVFFWYVLPIG
PAGAVLYRISEYLARSWSTPGDDRTAAFSTFAQRAFFVIDWIPSRLTALGFAIVGNFEDAIYAWRNHTRQWPDPNDGVLL
AAGSGALGARLAGPLAEPSSLDALAVGDSGPLTVGDDCTPRTLQSAVGLVWRAVILWMILLLMLTLAVWVS

Specific function: Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group [H]

COG id: COG1270

COG function: function code H; Cobalamin biosynthesis protein CobD/CbiB

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CobD/CbiB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004485 [H]

Pfam domain/function: PF03186 CobD_Cbib [H]

EC number: NA

Molecular weight: Translated: 34584; Mature: 34452

Theoretical pI: Translated: 6.59; Mature: 6.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFFSVLLALIIEQVRALSPSNPVFALFQFHAETVAHGLDAGKQKHGVLAWLAVVLPWVL
CCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
IVALIYFLLYKVSFVLAFIWNVVVVYFTLGFRQFSHYFTDIHLALNNDDVPRAREILHEW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHH
TGLDTVDMPVGEIVRHTLIHAVVASHRHVFGVFFWYVLPIGPAGAVLYRISEYLARSWST
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
PGDDRTAAFSTFAQRAFFVIDWIPSRLTALGFAIVGNFEDAIYAWRNHTRQWPDPNDGVL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCEE
LAAGSGALGARLAGPLAEPSSLDALAVGDSGPLTVGDDCTPRTLQSAVGLVWRAVILWMI
EEECCCCCHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
LLLMLTLAVWVS
HHHHHHHHHHCC
>Mature Secondary Structure 
TFFSVLLALIIEQVRALSPSNPVFALFQFHAETVAHGLDAGKQKHGVLAWLAVVLPWVL
CHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
IVALIYFLLYKVSFVLAFIWNVVVVYFTLGFRQFSHYFTDIHLALNNDDVPRAREILHEW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHH
TGLDTVDMPVGEIVRHTLIHAVVASHRHVFGVFFWYVLPIGPAGAVLYRISEYLARSWST
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
PGDDRTAAFSTFAQRAFFVIDWIPSRLTALGFAIVGNFEDAIYAWRNHTRQWPDPNDGVL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCEE
LAAGSGALGARLAGPLAEPSSLDALAVGDSGPLTVGDDCTPRTLQSAVGLVWRAVILWMI
EEECCCCCHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
LLLMLTLAVWVS
HHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA