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The map label for this gene is orn [H]

Identifier: 115351008

GI number: 115351008

Start: 1044642

End: 1045262

Strand: Direct

Name: orn [H]

Synonym: Bamb_0954

Alternate gene names: 115351008

Gene position: 1044642-1045262 (Clockwise)

Preceding gene: 115351004

Following gene: 115351011

Centisome position: 29.37

GC content: 65.86

Gene sequence:

>621_bases
ATGACCGATACCGCCGCTTCCGCCAGCCAGCCCGCGCTCGTGCGCAACGAGTTGAACCTCGTCTGGCTCGACATGGAGAT
GACGGGCCTCGACCCGGATAACGACCGCATCATCGAAATCGCGGTCGTCGTGACCAATTCCACCCTCGACATCGCGGTGG
AAGGCCCCGTGTTCGCGATCCACCAGAGCGACGAAACGCTCGCGAAGATGGACGACTGGAACAAGTCGACGCACGGCCGT
TCGGGGCTGATCGATCGCGTGCGCGCGTCGACCGTGACCGAGGCGGACGCCGCCGCGCAGCTGCAGGCGTTCCTCGCGCA
GTACGTGTCGCCCGGCAAGTCGCCGATGTGCGGCAACTCGATCTGCCAGGATCGCCGCTTCATGGCGCGCTGGATGCCGG
AATTCGAGCGGTTCTTCCACTACCGCAACCTGGACGTCAGCACGCTCAAGGAGCTGTGCCGCCGCTGGCAGCCCGCGATC
TACAAGGGTTTTCAGAAGCGCGCGATGCACACGGCGCTCGCGGACATCCACGAGTCGATCGACGAGCTGAAGTACTACCG
CCAGCATTTCCTGATTCCGGCCGCGTCGGCGCCGGCAGGCGAGTCCGCGCCGGCCGCCTGA

Upstream 100 bases:

>100_bases
TCGAAGGCGCCAAAGGGTTCTATGCGAGAATTATATGTTCTTGCGGACCGGGCCCGCTTACGCGATGCCGCCCGCCGTCC
GCCATTTTCCAGGATGACTC

Downstream 100 bases:

>100_bases
GCGGGCCGGCACGCGCCCGGCGCTCGCTACACGCTCAGCGCCGCGCGCTCTTCGGCCGGAACGCCGCGACCACCGCGGCG
TCGGTCTCGATGTACGGGCC

Product: oligoribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 206; Mature: 205

Protein sequence:

>206_residues
MTDTAASASQPALVRNELNLVWLDMEMTGLDPDNDRIIEIAVVVTNSTLDIAVEGPVFAIHQSDETLAKMDDWNKSTHGR
SGLIDRVRASTVTEADAAAQLQAFLAQYVSPGKSPMCGNSICQDRRFMARWMPEFERFFHYRNLDVSTLKELCRRWQPAI
YKGFQKRAMHTALADIHESIDELKYYRQHFLIPAASAPAGESAPAA

Sequences:

>Translated_206_residues
MTDTAASASQPALVRNELNLVWLDMEMTGLDPDNDRIIEIAVVVTNSTLDIAVEGPVFAIHQSDETLAKMDDWNKSTHGR
SGLIDRVRASTVTEADAAAQLQAFLAQYVSPGKSPMCGNSICQDRRFMARWMPEFERFFHYRNLDVSTLKELCRRWQPAI
YKGFQKRAMHTALADIHESIDELKYYRQHFLIPAASAPAGESAPAA
>Mature_205_residues
TDTAASASQPALVRNELNLVWLDMEMTGLDPDNDRIIEIAVVVTNSTLDIAVEGPVFAIHQSDETLAKMDDWNKSTHGRS
GLIDRVRASTVTEADAAAQLQAFLAQYVSPGKSPMCGNSICQDRRFMARWMPEFERFFHYRNLDVSTLKELCRRWQPAIY
KGFQKRAMHTALADIHESIDELKYYRQHFLIPAASAPAGESAPAA

Specific function: 3'-to-5' exoribonuclease specific for small oligoribonucleotides [H]

COG id: COG1949

COG function: function code A; Oligoribonuclease (3'->5' exoribonuclease)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 exonuclease domain [H]

Homologues:

Organism=Homo sapiens, GI224496106, Length=173, Percent_Identity=47.9768786127168, Blast_Score=178, Evalue=4e-45,
Organism=Escherichia coli, GI87082382, Length=176, Percent_Identity=60.7954545454545, Blast_Score=237, Evalue=4e-64,
Organism=Caenorhabditis elegans, GI17557752, Length=181, Percent_Identity=42.5414364640884, Blast_Score=160, Evalue=3e-40,
Organism=Saccharomyces cerevisiae, GI6323088, Length=198, Percent_Identity=38.8888888888889, Blast_Score=123, Evalue=2e-29,
Organism=Drosophila melanogaster, GI21355135, Length=174, Percent_Identity=40.8045977011494, Blast_Score=155, Evalue=2e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006055
- InterPro:   IPR013520
- InterPro:   IPR022894
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00929 Exonuc_X-T [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 23073; Mature: 22942

Theoretical pI: Translated: 5.60; Mature: 5.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDTAASASQPALVRNELNLVWLDMEMTGLDPDNDRIIEIAVVVTNSTLDIAVEGPVFAI
CCCCCCCCCCCHHHHCCCCEEEEEEEEECCCCCCCCEEEEEEEEECCEEEEEECCCEEEE
HQSDETLAKMDDWNKSTHGRSGLIDRVRASTVTEADAAAQLQAFLAQYVSPGKSPMCGNS
ECCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
ICQDRRFMARWMPEFERFFHYRNLDVSTLKELCRRWQPAIYKGFQKRAMHTALADIHESI
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
DELKYYRQHFLIPAASAPAGESAPAA
HHHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TDTAASASQPALVRNELNLVWLDMEMTGLDPDNDRIIEIAVVVTNSTLDIAVEGPVFAI
CCCCCCCCCCHHHHCCCCEEEEEEEEECCCCCCCCEEEEEEEEECCEEEEEECCCEEEE
HQSDETLAKMDDWNKSTHGRSGLIDRVRASTVTEADAAAQLQAFLAQYVSPGKSPMCGNS
ECCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
ICQDRRFMARWMPEFERFFHYRNLDVSTLKELCRRWQPAIYKGFQKRAMHTALADIHESI
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
DELKYYRQHFLIPAASAPAGESAPAA
HHHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA