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The map label for this gene is 115350987

Identifier: 115350987

GI number: 115350987

Start: 1025818

End: 1026741

Strand: Direct

Name: 115350987

Synonym: Bamb_0933

Alternate gene names: NA

Gene position: 1025818-1026741 (Clockwise)

Preceding gene: 115350985

Following gene: 115350989

Centisome position: 28.84

GC content: 66.56

Gene sequence:

>924_bases
ATGGCAACCGCCTTCTATACGCACCCCGATTGCATGTTGCACGAGATGGGGGAATGGCATCCGGAATGCCCGGCCCGACT
GTCGGCGATCCAGGATCAGCTGATCGCGAGCCGCATCGACGACCTGATCGTGCACGAAACCGCCCCGTTCGCGAGCGAGG
TGGCGCTGGGCCGCGTGCATACGCAGGCTCATATCGACTACATCCGCAGCATGACGCCCGTCGACGGCTACGTCGAGATC
GATCCCGACACGCTGATGAACCGCGACACGTGGCGCGCCGCGCTGCGCGCGGCTGGCGCTGCGATCGCGGCGACCGACGC
GGTGATCGAAGGCCGCTACGCGAATGCGTTCTGCAGCGTGCGGCCGCCCGGCCATCACGCGGAACCCGCGCGTGCGATGG
GCTTCTGCTTCTTCAACAACGTGGCGATCGCCGCGCGGCATGCGCTCGACGTTCACGGCATCGAGCGCGTCGCGATCATC
GATTTCGACGTGCACCACGGCAACGGCACCGAAGCCGCGTTCGCGAACGACGAGCGCGTGCTGATGTGCAGCTTCTTCCA
GCATCCGCTGTACCCGTTCTCGGGCGCCGATCATCAGGCGCCGAACATGGTCAACCTGCCGATGCCGGCACGCAGCAACG
GGATGGCGATCCGCGAAGCGGTCGACATGTTCTGGTTGCCGCGTCTCGACGCGTTCAAGCCGCAGATGCTGTTCGTGTCG
GCCGGTTTCGATGCGCATCGCGAGGACGACATCGGCAACCTCGGCCTCGTCGAGGCTGATTTCGAATGGCTGACCGCGCA
GGTCGTCGACGTCGCGCGCCGGCATGCGCAGGGCCGCATCGTGAGCTGTCTCGAGGGCGGCTACAACCTGTCCGCGCTCG
GCCGCAGCGTCGTCGCGCACCTGCGCGTGCTGGCCGGCATTTGA

Upstream 100 bases:

>100_bases
TGCAGCGCACCGTTGTGGTAAGTTAGCGGCGAATTCGCGGCAGACGATGGACATCATTGATGGAGACTCGTGGCGCACCT
TGCGTCGCGGATGACAGCTT

Downstream 100 bases:

>100_bases
CTGGCAGGCAGCGCGGCAGCGTGTGTTCAGCGCGCCGGCACGCGCGCGTGAATCCACGCGATCAGCGCATCGATCACGCG
ATCGCGCTCGAGATCGTTCA

Product: histone deacetylase superfamily protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 307; Mature: 306

Protein sequence:

>307_residues
MATAFYTHPDCMLHEMGEWHPECPARLSAIQDQLIASRIDDLIVHETAPFASEVALGRVHTQAHIDYIRSMTPVDGYVEI
DPDTLMNRDTWRAALRAAGAAIAATDAVIEGRYANAFCSVRPPGHHAEPARAMGFCFFNNVAIAARHALDVHGIERVAII
DFDVHHGNGTEAAFANDERVLMCSFFQHPLYPFSGADHQAPNMVNLPMPARSNGMAIREAVDMFWLPRLDAFKPQMLFVS
AGFDAHREDDIGNLGLVEADFEWLTAQVVDVARRHAQGRIVSCLEGGYNLSALGRSVVAHLRVLAGI

Sequences:

>Translated_307_residues
MATAFYTHPDCMLHEMGEWHPECPARLSAIQDQLIASRIDDLIVHETAPFASEVALGRVHTQAHIDYIRSMTPVDGYVEI
DPDTLMNRDTWRAALRAAGAAIAATDAVIEGRYANAFCSVRPPGHHAEPARAMGFCFFNNVAIAARHALDVHGIERVAII
DFDVHHGNGTEAAFANDERVLMCSFFQHPLYPFSGADHQAPNMVNLPMPARSNGMAIREAVDMFWLPRLDAFKPQMLFVS
AGFDAHREDDIGNLGLVEADFEWLTAQVVDVARRHAQGRIVSCLEGGYNLSALGRSVVAHLRVLAGI
>Mature_306_residues
ATAFYTHPDCMLHEMGEWHPECPARLSAIQDQLIASRIDDLIVHETAPFASEVALGRVHTQAHIDYIRSMTPVDGYVEID
PDTLMNRDTWRAALRAAGAAIAATDAVIEGRYANAFCSVRPPGHHAEPARAMGFCFFNNVAIAARHALDVHGIERVAIID
FDVHHGNGTEAAFANDERVLMCSFFQHPLYPFSGADHQAPNMVNLPMPARSNGMAIREAVDMFWLPRLDAFKPQMLFVSA
GFDAHREDDIGNLGLVEADFEWLTAQVVDVARRHAQGRIVSCLEGGYNLSALGRSVVAHLRVLAGI

Specific function: Putative deacetylase [H]

COG id: COG0123

COG function: function code BQ; Deacetylases, including yeast histone deacetylase and acetoin utilization protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the histone deacetylase family [H]

Homologues:

Organism=Homo sapiens, GI20070354, Length=330, Percent_Identity=36.0606060606061, Blast_Score=154, Evalue=1e-37,
Organism=Homo sapiens, GI13128864, Length=307, Percent_Identity=34.8534201954397, Blast_Score=154, Evalue=1e-37,
Organism=Homo sapiens, GI17158039, Length=331, Percent_Identity=32.3262839879154, Blast_Score=134, Evalue=1e-31,
Organism=Homo sapiens, GI30795202, Length=331, Percent_Identity=32.3262839879154, Blast_Score=133, Evalue=2e-31,
Organism=Homo sapiens, GI30795204, Length=331, Percent_Identity=32.3262839879154, Blast_Score=133, Evalue=2e-31,
Organism=Homo sapiens, GI226529806, Length=327, Percent_Identity=33.3333333333333, Blast_Score=131, Evalue=7e-31,
Organism=Homo sapiens, GI153085395, Length=257, Percent_Identity=35.7976653696498, Blast_Score=123, Evalue=2e-28,
Organism=Homo sapiens, GI62750347, Length=238, Percent_Identity=35.2941176470588, Blast_Score=122, Evalue=5e-28,
Organism=Homo sapiens, GI62750349, Length=238, Percent_Identity=35.2941176470588, Blast_Score=122, Evalue=5e-28,
Organism=Homo sapiens, GI169234807, Length=256, Percent_Identity=34.375, Blast_Score=116, Evalue=3e-26,
Organism=Homo sapiens, GI148539870, Length=256, Percent_Identity=34.375, Blast_Score=116, Evalue=3e-26,
Organism=Homo sapiens, GI13128862, Length=275, Percent_Identity=22.5454545454545, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI217272877, Length=263, Percent_Identity=26.2357414448669, Blast_Score=72, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI17540334, Length=306, Percent_Identity=32.6797385620915, Blast_Score=152, Evalue=3e-37,
Organism=Caenorhabditis elegans, GI193206283, Length=306, Percent_Identity=32.6797385620915, Blast_Score=150, Evalue=1e-36,
Organism=Caenorhabditis elegans, GI17540332, Length=306, Percent_Identity=32.6797385620915, Blast_Score=150, Evalue=1e-36,
Organism=Caenorhabditis elegans, GI25154020, Length=297, Percent_Identity=33.3333333333333, Blast_Score=139, Evalue=2e-33,
Organism=Caenorhabditis elegans, GI25154022, Length=299, Percent_Identity=32.7759197324415, Blast_Score=137, Evalue=8e-33,
Organism=Caenorhabditis elegans, GI193209491, Length=325, Percent_Identity=31.6923076923077, Blast_Score=136, Evalue=1e-32,
Organism=Caenorhabditis elegans, GI17537347, Length=308, Percent_Identity=32.4675324675325, Blast_Score=136, Evalue=1e-32,
Organism=Caenorhabditis elegans, GI17534739, Length=328, Percent_Identity=24.6951219512195, Blast_Score=90, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17508561, Length=140, Percent_Identity=30, Blast_Score=64, Evalue=7e-11,
Organism=Saccharomyces cerevisiae, GI6324307, Length=318, Percent_Identity=32.7044025157233, Blast_Score=152, Evalue=5e-38,
Organism=Saccharomyces cerevisiae, GI6325141, Length=301, Percent_Identity=24.2524916943522, Blast_Score=77, Evalue=2e-15,
Organism=Saccharomyces cerevisiae, GI6323999, Length=287, Percent_Identity=22.6480836236934, Blast_Score=71, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6321244, Length=267, Percent_Identity=24.7191011235955, Blast_Score=71, Evalue=3e-13,
Organism=Saccharomyces cerevisiae, GI6325325, Length=176, Percent_Identity=23.8636363636364, Blast_Score=65, Evalue=1e-11,
Organism=Drosophila melanogaster, GI281360899, Length=317, Percent_Identity=34.384858044164, Blast_Score=156, Evalue=1e-38,
Organism=Drosophila melanogaster, GI24642142, Length=317, Percent_Identity=34.384858044164, Blast_Score=156, Evalue=2e-38,
Organism=Drosophila melanogaster, GI24642144, Length=317, Percent_Identity=34.384858044164, Blast_Score=156, Evalue=2e-38,
Organism=Drosophila melanogaster, GI24642146, Length=317, Percent_Identity=34.384858044164, Blast_Score=156, Evalue=2e-38,
Organism=Drosophila melanogaster, GI24641720, Length=330, Percent_Identity=31.8181818181818, Blast_Score=121, Evalue=7e-28,
Organism=Drosophila melanogaster, GI281360801, Length=330, Percent_Identity=31.8181818181818, Blast_Score=121, Evalue=7e-28,
Organism=Drosophila melanogaster, GI281360799, Length=330, Percent_Identity=31.8181818181818, Blast_Score=121, Evalue=7e-28,
Organism=Drosophila melanogaster, GI24657891, Length=274, Percent_Identity=25.5474452554745, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI24649807, Length=292, Percent_Identity=26.027397260274, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24644244, Length=274, Percent_Identity=22.2627737226277, Blast_Score=65, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000286 [H]

Pfam domain/function: PF00850 Hist_deacetyl [H]

EC number: NA

Molecular weight: Translated: 33778; Mature: 33647

Theoretical pI: Translated: 5.76; Mature: 5.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATAFYTHPDCMLHEMGEWHPECPARLSAIQDQLIASRIDDLIVHETAPFASEVALGRVH
CCCEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
TQAHIDYIRSMTPVDGYVEIDPDTLMNRDTWRAALRAAGAAIAATDAVIEGRYANAFCSV
HHHHHHHHHHCCCCCCEEEECHHHHCCCHHHHHHHHHCCCHHHHHHHHHCCCCCCEEEEC
RPPGHHAEPARAMGFCFFNNVAIAARHALDVHGIERVAIIDFDVHHGNGTEAAFANDERV
CCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCEECCCCEE
LMCSFFQHPLYPFSGADHQAPNMVNLPMPARSNGMAIREAVDMFWLPRLDAFKPQMLFVS
EEEEHHCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEE
AGFDAHREDDIGNLGLVEADFEWLTAQVVDVARRHAQGRIVSCLEGGYNLSALGRSVVAH
CCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHCCCEEEEHHCCCCHHHHHHHHHHH
LRVLAGI
HHHHHCC
>Mature Secondary Structure 
ATAFYTHPDCMLHEMGEWHPECPARLSAIQDQLIASRIDDLIVHETAPFASEVALGRVH
CCEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
TQAHIDYIRSMTPVDGYVEIDPDTLMNRDTWRAALRAAGAAIAATDAVIEGRYANAFCSV
HHHHHHHHHHCCCCCCEEEECHHHHCCCHHHHHHHHHCCCHHHHHHHHHCCCCCCEEEEC
RPPGHHAEPARAMGFCFFNNVAIAARHALDVHGIERVAIIDFDVHHGNGTEAAFANDERV
CCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCEECCCCEE
LMCSFFQHPLYPFSGADHQAPNMVNLPMPARSNGMAIREAVDMFWLPRLDAFKPQMLFVS
EEEEHHCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEE
AGFDAHREDDIGNLGLVEADFEWLTAQVVDVARRHAQGRIVSCLEGGYNLSALGRSVVAH
CCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHCCCEEEEHHCCCCHHHHHHHHHHH
LRVLAGI
HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]