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The map label for this gene is ihfB

Identifier: 115350978

GI number: 115350978

Start: 1017295

End: 1017618

Strand: Direct

Name: ihfB

Synonym: Bamb_0924

Alternate gene names: 115350978

Gene position: 1017295-1017618 (Clockwise)

Preceding gene: 115350977

Following gene: 115350979

Centisome position: 28.6

GC content: 61.73

Gene sequence:

>324_bases
ATGACCAAATCCGAGTTGGTCGCGCAGCTGGCACTGCGATTTCCGCAACTTGTCCTCAAGGATGCGGATTTCGCGGTGAA
AACGATGCTCGATGCGATGTCCGACGCCCTGTCGAAAGGGCATCGCATCGAAATTCGGGGTTTCGGCAGCTTCGGCCTCA
ACCGTCGCCCGGCGCGCGTCGGACGCAACCCGAAGTCGGGGGAGAAAGTGCAGGTGCCCGAGAAGTTCGTGCCTCACTTC
AAGCCCGGCAAGGAATTGCGCGAACGCGTCGACGGCCGCGCCGGTGAGCCGCTGAAAGCTGATGATCCGGACGACGAGCG
TTGA

Upstream 100 bases:

>100_bases
GACTCGAGCGCTGCCGCGACCGGTACGACCAACCTCGGCGCGCTGCTGAAGGCGAAGCTCGACGGCCAGAACCAGTAAGC
CTCACGAGGTCTGCTGAAGT

Downstream 100 bases:

>100_bases
GCGTCGTTCGGCTTGCCCGGAACCTGTCCGGCGAAGGCTGAAGAAAAAAGCGCCCCTAGCGGGCGCTTTTTTCGTTTTCG
GCGGCCGCGTGGCAACGCGC

Product: integration host factor subunit beta

Products: NA

Alternate protein names: IHF-beta

Number of amino acids: Translated: 107; Mature: 106

Protein sequence:

>107_residues
MTKSELVAQLALRFPQLVLKDADFAVKTMLDAMSDALSKGHRIEIRGFGSFGLNRRPARVGRNPKSGEKVQVPEKFVPHF
KPGKELRERVDGRAGEPLKADDPDDER

Sequences:

>Translated_107_residues
MTKSELVAQLALRFPQLVLKDADFAVKTMLDAMSDALSKGHRIEIRGFGSFGLNRRPARVGRNPKSGEKVQVPEKFVPHF
KPGKELRERVDGRAGEPLKADDPDDER
>Mature_106_residues
TKSELVAQLALRFPQLVLKDADFAVKTMLDAMSDALSKGHRIEIRGFGSFGLNRRPARVGRNPKSGEKVQVPEKFVPHFK
PGKELRERVDGRAGEPLKADDPDDER

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family

Homologues:

Organism=Escherichia coli, GI1787141, Length=91, Percent_Identity=56.043956043956, Blast_Score=107, Evalue=2e-25,
Organism=Escherichia coli, GI1790433, Length=90, Percent_Identity=33.3333333333333, Blast_Score=64, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): IHFB_BURA4 (B1YV36)

Other databases:

- EMBL:   CP001025
- RefSeq:   YP_001807635.1
- ProteinModelPortal:   B1YV36
- SMR:   B1YV36
- GeneID:   6178686
- GenomeReviews:   CP001025_GR
- KEGG:   bac:BamMC406_0928
- HOGENOM:   HBG705085
- OMA:   PEKYVPH
- ProtClustDB:   PRK00199
- BioCyc:   BAMB398577:BAMMC406_0928-MONOMER
- GO:   GO:0005694
- GO:   GO:0006350
- HAMAP:   MF_00381
- InterPro:   IPR000119
- InterPro:   IPR010992
- InterPro:   IPR005685
- Gene3D:   G3DSA:4.10.520.10
- PRINTS:   PR01727
- SMART:   SM00411
- TIGRFAMs:   TIGR00988

Pfam domain/function: PF00216 Bac_DNA_binding; SSF47729 IHF_like_DNA_bnd

EC number: NA

Molecular weight: Translated: 11969; Mature: 11838

Theoretical pI: Translated: 10.42; Mature: 10.42

Prosite motif: PS00045 HISTONE_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKSELVAQLALRFPQLVLKDADFAVKTMLDAMSDALSKGHRIEIRGFGSFGLNRRPARV
CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHC
GRNPKSGEKVQVPEKFVPHFKPGKELRERVDGRAGEPLKADDPDDER
CCCCCCCCEEECCHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TKSELVAQLALRFPQLVLKDADFAVKTMLDAMSDALSKGHRIEIRGFGSFGLNRRPARV
CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHC
GRNPKSGEKVQVPEKFVPHFKPGKELRERVDGRAGEPLKADDPDDER
CCCCCCCCEEECCHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA