| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is 115350925
Identifier: 115350925
GI number: 115350925
Start: 956493
End: 957752
Strand: Direct
Name: 115350925
Synonym: Bamb_0871
Alternate gene names: NA
Gene position: 956493-957752 (Clockwise)
Preceding gene: 115350924
Following gene: 115350926
Centisome position: 26.89
GC content: 70.48
Gene sequence:
>1260_bases ATGGTCACTGTGAAATCGTTCGCGGTAGGCTGCGCGCTGTGGCTTGCGGCGCTGTCGCCCGCCGGCGCGCACGACGCCCC GAAAGCTGCCGATCCGCATGCCGCGCACATGAGCATGCAGGCCGCGCCGGCGCAACAGAAGCAGCCGCTCGCGACCGGCG CCGCGTTCGACGCGCGGCACCGCCTGTGGGTCGCATGGGTCGAAGGCGCGCACGTCGTCGTCGCGCATTCGGACGACGCG GGCCGCACGCTGTCCACGCCCGTGACCGTCAACGCGATGCCCGAGCCGATCTACACGAGCGCGGAGAATCGACCGAAGAT CGCAACGAGCCCCGACGGCCGCGCGGTGTACGTGTCGTGGTCGATGCCGCTCGATGCGCCGTACACCGGCATGGTGCGCT TCTCGCGCTCGCTCGACGGCGGGGCGACCTGGAGCGTGCCCGTCACCGTGCATCGCGACCGGCAGGCGATCACGCACCGC TTCGACATGATGGCCGTCGATCCGGCCGGCAACATCGCGATCGCGTGGATCGACAAGCGCGATCTCGTCGCGGCGAAGGC GGCGGGGCAGGCGTACGAAGGCGCGGCCGTGTACTACGCGGTGTCGCGCGACGGCGGCGCGTCGTTCGAGCCCGAGCGCA AGGTGACCGACCATACGTGCGAATGCTGCCGCATCGCGATGGCGATCGATCCGGCCGGACACATCGAAGGCGTGTGGCGC AACGTATTCCCCGGACAGATCCGCGATCATGCGCTCGCGGTGCTGCCCGTGTCGGCGTCGGAGCCCGTCGTGCCGGTGCG CGCGACGTTCTCGAACTGGCATGTCGCGGCCTGCCCGGAGCACGGGCCGGCACTTGCGATCACGCCCGATGGGACGCGTC ATATCGCGTGGTTCGGCGTCGTCGAGGGCCGCGCCGACGTGTTCTACTCGCGCATCGGCGCCGACGGCCAGCCGCGCGGC ACGCCGTGGGCATTCGGCGCGAATCCGGCGGTGCCGGCCGAGCAGGCATCGCATGCGGCGCTCGTCGCGCACGGCGACGT CGTCTGGCTCGCATGGAAGGCGTTCGACGGCGACACGATGCAGATCAAGCTGCGTCGCTCCGACGATCGCGGCGAGCACT GGTCGGCGCCGCGCGTGATCGCGTCGACGTCGGGCGCGAGCGACAATCCGCAACTGCTCGACGACACGGGGCGCATCTAC CTGTCGTGGCGTACGCGTAACGACGGCTACCGGCTGATTCCCGTGGAGGGCGCGCAATGA
Upstream 100 bases:
>100_bases ACCGTCACTGGACCGCATCGGTCGGCATCGACAACCTGACGGACCGCCGCTACTACGTGTTCCACCCGTATCCGGGTCGC ACTTTCTTTGGAGAACTGAA
Downstream 100 bases:
>100_bases AACGGCTGATGGTATTGATCGGCGCCGTGCTCGCGAGCCTGCCGGCGTGGGCCGGCGAGCTTCAGCCGCTGCGCGCGGCC GAGGTCGCGAAGTTGTATGC
Product: hypothetical protein
Products: NA
Alternate protein names: Signal Peptide Protein; BNR Repeat-Containing Protein; BNR/Asp-Box Repeat-Containing Protein; Glycosyl Hydrolase BNR Repeat-Containing Protein; Cytochrome C Biogenesis Protein; BNR/Asp-Box Repeat Domain Protein
Number of amino acids: Translated: 419; Mature: 419
Protein sequence:
>419_residues MVTVKSFAVGCALWLAALSPAGAHDAPKAADPHAAHMSMQAAPAQQKQPLATGAAFDARHRLWVAWVEGAHVVVAHSDDA GRTLSTPVTVNAMPEPIYTSAENRPKIATSPDGRAVYVSWSMPLDAPYTGMVRFSRSLDGGATWSVPVTVHRDRQAITHR FDMMAVDPAGNIAIAWIDKRDLVAAKAAGQAYEGAAVYYAVSRDGGASFEPERKVTDHTCECCRIAMAIDPAGHIEGVWR NVFPGQIRDHALAVLPVSASEPVVPVRATFSNWHVAACPEHGPALAITPDGTRHIAWFGVVEGRADVFYSRIGADGQPRG TPWAFGANPAVPAEQASHAALVAHGDVVWLAWKAFDGDTMQIKLRRSDDRGEHWSAPRVIASTSGASDNPQLLDDTGRIY LSWRTRNDGYRLIPVEGAQ
Sequences:
>Translated_419_residues MVTVKSFAVGCALWLAALSPAGAHDAPKAADPHAAHMSMQAAPAQQKQPLATGAAFDARHRLWVAWVEGAHVVVAHSDDA GRTLSTPVTVNAMPEPIYTSAENRPKIATSPDGRAVYVSWSMPLDAPYTGMVRFSRSLDGGATWSVPVTVHRDRQAITHR FDMMAVDPAGNIAIAWIDKRDLVAAKAAGQAYEGAAVYYAVSRDGGASFEPERKVTDHTCECCRIAMAIDPAGHIEGVWR NVFPGQIRDHALAVLPVSASEPVVPVRATFSNWHVAACPEHGPALAITPDGTRHIAWFGVVEGRADVFYSRIGADGQPRG TPWAFGANPAVPAEQASHAALVAHGDVVWLAWKAFDGDTMQIKLRRSDDRGEHWSAPRVIASTSGASDNPQLLDDTGRIY LSWRTRNDGYRLIPVEGAQ >Mature_419_residues MVTVKSFAVGCALWLAALSPAGAHDAPKAADPHAAHMSMQAAPAQQKQPLATGAAFDARHRLWVAWVEGAHVVVAHSDDA GRTLSTPVTVNAMPEPIYTSAENRPKIATSPDGRAVYVSWSMPLDAPYTGMVRFSRSLDGGATWSVPVTVHRDRQAITHR FDMMAVDPAGNIAIAWIDKRDLVAAKAAGQAYEGAAVYYAVSRDGGASFEPERKVTDHTCECCRIAMAIDPAGHIEGVWR NVFPGQIRDHALAVLPVSASEPVVPVRATFSNWHVAACPEHGPALAITPDGTRHIAWFGVVEGRADVFYSRIGADGQPRG TPWAFGANPAVPAEQASHAALVAHGDVVWLAWKAFDGDTMQIKLRRSDDRGEHWSAPRVIASTSGASDNPQLLDDTGRIY LSWRTRNDGYRLIPVEGAQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45006; Mature: 45006
Theoretical pI: Translated: 6.87; Mature: 6.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVTVKSFAVGCALWLAALSPAGAHDAPKAADPHAAHMSMQAAPAQQKQPLATGAAFDARH CEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHEEEECCCCCCCCCCCCCCCCCCCC RLWVAWVEGAHVVVAHSDDAGRTLSTPVTVNAMPEPIYTSAENRPKIATSPDGRAVYVSW EEEEEEECCCEEEEEECCCCCCEECCCEEEECCCCCCCCCCCCCCCEEECCCCCEEEEEE SMPLDAPYTGMVRFSRSLDGGATWSVPVTVHRDRQAITHRFDMMAVDPAGNIAIAWIDKR CCCCCCCCCCEEEEECCCCCCCEEEEEEEEECCHHHHHHEEEEEEECCCCCEEEEEECCC DLVAAKAAGQAYEGAAVYYAVSRDGGASFEPERKVTDHTCECCRIAMAIDPAGHIEGVWR CEEEEHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHEEEEEEECCCHHHHHHHH NVFPGQIRDHALAVLPVSASEPVVPVRATFSNWHVAACPEHGPALAITPDGTRHIAWFGV CCCCCCCCCCEEEEEEECCCCCEEEEEEECCCCEEEECCCCCCEEEECCCCCEEEEEEEE VEGRADVFYSRIGADGQPRGTPWAFGANPAVPAEQASHAALVAHGDVVWLAWKAFDGDTM ECCCHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCCCCEEEEEECCEEEEEEEECCCCEE QIKLRRSDDRGEHWSAPRVIASTSGASDNPQLLDDTGRIYLSWRTRNDGYRLIPVEGAQ EEEEECCCCCCCCCCCCEEEEECCCCCCCCCEEECCCEEEEEEEECCCCEEEEEECCCC >Mature Secondary Structure MVTVKSFAVGCALWLAALSPAGAHDAPKAADPHAAHMSMQAAPAQQKQPLATGAAFDARH CEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHEEEECCCCCCCCCCCCCCCCCCCC RLWVAWVEGAHVVVAHSDDAGRTLSTPVTVNAMPEPIYTSAENRPKIATSPDGRAVYVSW EEEEEEECCCEEEEEECCCCCCEECCCEEEECCCCCCCCCCCCCCCEEECCCCCEEEEEE SMPLDAPYTGMVRFSRSLDGGATWSVPVTVHRDRQAITHRFDMMAVDPAGNIAIAWIDKR CCCCCCCCCCEEEEECCCCCCCEEEEEEEEECCHHHHHHEEEEEEECCCCCEEEEEECCC DLVAAKAAGQAYEGAAVYYAVSRDGGASFEPERKVTDHTCECCRIAMAIDPAGHIEGVWR CEEEEHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHEEEEEEECCCHHHHHHHH NVFPGQIRDHALAVLPVSASEPVVPVRATFSNWHVAACPEHGPALAITPDGTRHIAWFGV CCCCCCCCCCEEEEEEECCCCCEEEEEEECCCCEEEECCCCCCEEEECCCCCEEEEEEEE VEGRADVFYSRIGADGQPRGTPWAFGANPAVPAEQASHAALVAHGDVVWLAWKAFDGDTM ECCCHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCCCCEEEEEECCEEEEEEEECCCCEE QIKLRRSDDRGEHWSAPRVIASTSGASDNPQLLDDTGRIYLSWRTRNDGYRLIPVEGAQ EEEEECCCCCCCCCCCCEEEEECCCCCCCCCEEECCCEEEEEEEECCCCEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA