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The map label for this gene is yncD [C]

Identifier: 115350924

GI number: 115350924

Start: 954151

End: 956505

Strand: Direct

Name: yncD [C]

Synonym: Bamb_0870

Alternate gene names: 115350924

Gene position: 954151-956505 (Clockwise)

Preceding gene: 115350923

Following gene: 115350925

Centisome position: 26.83

GC content: 68.79

Gene sequence:

>2355_bases
ATGTCGTTCACCTTCGCCGCGCGGCCGTCGCGCGGTCGGCTCGCGCTCGCGTGCGCGGCCGCTTTTGCGTGGCCTGCCGC
ACAGGCGGCTGCGATCGATCGCGCATCCGCCGAGCCGGTGCCCGGCGGCGCGGGCAACCCGGCCGGCCGTGCCGCACCGG
TTGCCGCGGTCGTGCCCGCGCCGCCGGGCGACACGCTGACCGAGGTCAGCGTCACCGCCCGGCGGCAACCCGTCGATCCG
GATACGCCGGCCGTCGTCGAGTCGATCACGCGCGAGCAGATCGATGCGCACACCAACGTCACGACCGAGGACGCGCTGAA
GTACGCGCCGAACCTGATGGTTCGCAAGCGCTACATCGGCGACCGCAACAGCGTGTTCGCCGGCCGCGACTTCAACGAAC
TGCAGAGTGCGCGCGGGCTCGTGTATGCCGATGGCCTGCTGCTGTCGAACCTGCTCGGCTCGAGCTATGCGTACCCGCCG
CGCTGGTCGCTGATCGCGCCCGACGATGTCGAGCGCGTCGACGTGCTGTATGGCCCCTTTTCCGCGCTGTACCCCGGCAA
CGCGATCGGCTCGACCGTGCTGCTGACCACGCGGCGGCCCGACAAACTCGAGGCGTCGCTGTCGACGCAGTTCTTCACGC
AGCGCTATCACGACGGCTACGGGCTGGCGGACAGCTTCGGCGGCAACCACCAGACCGCGCGGATCGCGAACCGGATCGGC
AAATTCTGGTTCTCGCTGTCGCTCGACCGGCTGGAGAACGACGGTCAGCCGATGCAGTATGCAAGCCCCAATTCCGCGTA
CAACCCGAAGCTCGGCGCCGCGGTGCCCGTCACAGGCGCGGCCACCGACATCGGACCCAACGGCAAGCCGCGCACGATCG
TCGGCGCGCAGAACATCGAGCGGACCGAGCAGCTCAACGAGACGGTCCGCATGGGCTATGCGTTTACGGACCACGTCGAC
GCGACGCTCACGCTCGGGCACTGGGAGAACCATTACCGGCAGCACGGCGAAACCTTCCTGCGCGACGCGGCCGGCAATCC
CGTCTACGGCGGCAACGTATCGATCGGCGGCCGGAACATGACCGTCGCGCCGAGCGCGTTCGCGCCGCAGCGCGGCGACC
AGGAGAACTGGCTGTACGCGCTCGGCCTGAACGGCCGGCTCGATTCGGGCTGGCGGCTGTCGGGCGTGGTGTCCGCCTAC
GACGTGTCGCGCGACGTGCTGCGCGCGGCATCGACCGCGCAGGGCGGGGCGGGCACGCTGTTCCAGGGCGACGGCACGGG
CTGGCGCACGCTCGACCTGAAGGCCGAGGCGCCGGAAGTGAAGGGCCACACGTTCACGTTCGGCTATCACTACGACAACT
ATTTCCTGCGCAACGTCACGTACAACACGGCCGACTGGCTGGCCGGGCCGACCACCTCGCTCGCGAGCGTCTACCAGGGC
GATACGCGCACGCAGGCGCTGTTCGCGCAGGACGCGTGGCGTTTCGCGCCCGGTTGGCTCGCGACCCTCGGCCTGCGCTA
CGAGCGCTGGGATGCATACGGCGGCGCGCTCGGCAACGCGGGCGGCACGGTCGGTTACGCGGACCGCGGCGCGAATGCGC
TGTCGCCGAAAGTCGCGCTGCAGTGGGACGCGACGGACGTGTGGCGCTTCCGGGTGTCGTTCGCGACGGGCACGCGCTTC
CCGACGGTCGGCGAGCTGTTCCAGGGCACGATCTCGAACAACGCGATCGTCAACAACAACCCGGGCCTGCGGCCGGAAAA
GGCGATCGACTGGGACTTCACGGCCGAGCGCGACGTGGGCGTCGGCGTCGTGCGCGCGAGCGTGTTCCAGAGCGACCTGC
GCGATTCGATCTACAGCCAGACGACGGTGTCGGGCGCGTCGACCGTCACCAACATCTCGAACGTCGATCGCGTGCGCGTG
CGCGGCGTCGAACTCGGATTCAGCGGCCGCAACGTCGGGCTGCGCGGGCTCGACATCGACGCGAATGTGTCGGCCAGCAA
TGCGCAGATCTTGGCCGACACCGCGAATCCCGCGTACGTCGGCTCGCGCTTTCCGCGCATCCCGCGCATGCGCGCGAACC
TGCTCGCGTCGTACCGCTTCGACGAGCACTGGCTCGCGAGCGTCGGCGTCCGGTACTCCGGTCGCCAGTTCAACACGCTG
GACAACAGCGACGTGAATCCGGACGTGTACGGCGGCACGAGCAGTTTCACGGTCGTCGACCTGAAGGCGCGCTACCGGTT
CGACCGTCACTGGACCGCATCGGTCGGCATCGACAACCTGACGGACCGCCGCTACTACGTGTTCCACCCGTATCCGGGTC
GCACTTTCTTTGGAGAACTGAAATGGTCACTGTGA

Upstream 100 bases:

>100_bases
GCGCGTGCCGCCCGCGGCCCGGTCCGCGCGCCGCGCCGTAGGCGCGCGGCGCGTCGGCGCGCGTCCGGCGGCTCCCGGTC
ACGTTTTCAGGAATTCATCC

Downstream 100 bases:

>100_bases
AATCGTTCGCGGTAGGCTGCGCGCTGTGGCTTGCGGCGCTGTCGCCCGCCGGCGCGCACGACGCCCCGAAAGCTGCCGAT
CCGCATGCCGCGCACATGAG

Product: TonB-dependent receptor

Products: NA

Alternate protein names: NB-Dependent Receptor Protein; NB-Dependent Siderophore Receptor; Vitamin; Outer Membrane Receptor; Nb-Dependent Receptor; NB Dependent Receptor; NB-Dependent Copper Receptor; NB-Dependent Receptor Plug; Outer Membrane Receptor Protein; Exogenous Ferric Siderophore Receptor; Exogenous Ferric Siderophore nB-Dependent Receptor; Ferrisiderophore Receptor Protein; Outer Membrane Receptor Family Protein; NB-Dependent Receptor Domain Protein; Fe Transport Outer Membrane Receptor Protein

Number of amino acids: Translated: 784; Mature: 783

Protein sequence:

>784_residues
MSFTFAARPSRGRLALACAAAFAWPAAQAAAIDRASAEPVPGGAGNPAGRAAPVAAVVPAPPGDTLTEVSVTARRQPVDP
DTPAVVESITREQIDAHTNVTTEDALKYAPNLMVRKRYIGDRNSVFAGRDFNELQSARGLVYADGLLLSNLLGSSYAYPP
RWSLIAPDDVERVDVLYGPFSALYPGNAIGSTVLLTTRRPDKLEASLSTQFFTQRYHDGYGLADSFGGNHQTARIANRIG
KFWFSLSLDRLENDGQPMQYASPNSAYNPKLGAAVPVTGAATDIGPNGKPRTIVGAQNIERTEQLNETVRMGYAFTDHVD
ATLTLGHWENHYRQHGETFLRDAAGNPVYGGNVSIGGRNMTVAPSAFAPQRGDQENWLYALGLNGRLDSGWRLSGVVSAY
DVSRDVLRAASTAQGGAGTLFQGDGTGWRTLDLKAEAPEVKGHTFTFGYHYDNYFLRNVTYNTADWLAGPTTSLASVYQG
DTRTQALFAQDAWRFAPGWLATLGLRYERWDAYGGALGNAGGTVGYADRGANALSPKVALQWDATDVWRFRVSFATGTRF
PTVGELFQGTISNNAIVNNNPGLRPEKAIDWDFTAERDVGVGVVRASVFQSDLRDSIYSQTTVSGASTVTNISNVDRVRV
RGVELGFSGRNVGLRGLDIDANVSASNAQILADTANPAYVGSRFPRIPRMRANLLASYRFDEHWLASVGVRYSGRQFNTL
DNSDVNPDVYGGTSSFTVVDLKARYRFDRHWTASVGIDNLTDRRYYVFHPYPGRTFFGELKWSL

Sequences:

>Translated_784_residues
MSFTFAARPSRGRLALACAAAFAWPAAQAAAIDRASAEPVPGGAGNPAGRAAPVAAVVPAPPGDTLTEVSVTARRQPVDP
DTPAVVESITREQIDAHTNVTTEDALKYAPNLMVRKRYIGDRNSVFAGRDFNELQSARGLVYADGLLLSNLLGSSYAYPP
RWSLIAPDDVERVDVLYGPFSALYPGNAIGSTVLLTTRRPDKLEASLSTQFFTQRYHDGYGLADSFGGNHQTARIANRIG
KFWFSLSLDRLENDGQPMQYASPNSAYNPKLGAAVPVTGAATDIGPNGKPRTIVGAQNIERTEQLNETVRMGYAFTDHVD
ATLTLGHWENHYRQHGETFLRDAAGNPVYGGNVSIGGRNMTVAPSAFAPQRGDQENWLYALGLNGRLDSGWRLSGVVSAY
DVSRDVLRAASTAQGGAGTLFQGDGTGWRTLDLKAEAPEVKGHTFTFGYHYDNYFLRNVTYNTADWLAGPTTSLASVYQG
DTRTQALFAQDAWRFAPGWLATLGLRYERWDAYGGALGNAGGTVGYADRGANALSPKVALQWDATDVWRFRVSFATGTRF
PTVGELFQGTISNNAIVNNNPGLRPEKAIDWDFTAERDVGVGVVRASVFQSDLRDSIYSQTTVSGASTVTNISNVDRVRV
RGVELGFSGRNVGLRGLDIDANVSASNAQILADTANPAYVGSRFPRIPRMRANLLASYRFDEHWLASVGVRYSGRQFNTL
DNSDVNPDVYGGTSSFTVVDLKARYRFDRHWTASVGIDNLTDRRYYVFHPYPGRTFFGELKWSL
>Mature_783_residues
SFTFAARPSRGRLALACAAAFAWPAAQAAAIDRASAEPVPGGAGNPAGRAAPVAAVVPAPPGDTLTEVSVTARRQPVDPD
TPAVVESITREQIDAHTNVTTEDALKYAPNLMVRKRYIGDRNSVFAGRDFNELQSARGLVYADGLLLSNLLGSSYAYPPR
WSLIAPDDVERVDVLYGPFSALYPGNAIGSTVLLTTRRPDKLEASLSTQFFTQRYHDGYGLADSFGGNHQTARIANRIGK
FWFSLSLDRLENDGQPMQYASPNSAYNPKLGAAVPVTGAATDIGPNGKPRTIVGAQNIERTEQLNETVRMGYAFTDHVDA
TLTLGHWENHYRQHGETFLRDAAGNPVYGGNVSIGGRNMTVAPSAFAPQRGDQENWLYALGLNGRLDSGWRLSGVVSAYD
VSRDVLRAASTAQGGAGTLFQGDGTGWRTLDLKAEAPEVKGHTFTFGYHYDNYFLRNVTYNTADWLAGPTTSLASVYQGD
TRTQALFAQDAWRFAPGWLATLGLRYERWDAYGGALGNAGGTVGYADRGANALSPKVALQWDATDVWRFRVSFATGTRFP
TVGELFQGTISNNAIVNNNPGLRPEKAIDWDFTAERDVGVGVVRASVFQSDLRDSIYSQTTVSGASTVTNISNVDRVRVR
GVELGFSGRNVGLRGLDIDANVSASNAQILADTANPAYVGSRFPRIPRMRANLLASYRFDEHWLASVGVRYSGRQFNTLD
NSDVNPDVYGGTSSFTVVDLKARYRFDRHWTASVGIDNLTDRRYYVFHPYPGRTFFGELKWSL

Specific function: Probable Receptor, Tonb-Dependent. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Outer Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787723, Length=354, Percent_Identity=23.1638418079096, Blast_Score=65, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 85297; Mature: 85166

Theoretical pI: Translated: 7.85; Mature: 7.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFTFAARPSRGRLALACAAAFAWPAAQAAAIDRASAEPVPGGAGNPAGRAAPVAAVVPA
CCEEECCCCCCCCEEEEEHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECC
PPGDTLTEVSVTARRQPVDPDTPAVVESITREQIDAHTNVTTEDALKYAPNLMVRKRYIG
CCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCEEEHHHCC
DRNSVFAGRDFNELQSARGLVYADGLLLSNLLGSSYAYPPRWSLIAPDDVERVDVLYGPF
CCCCEECCCCHHHHHHHCCEEEECHHHHHHHHCCCCCCCCCCEEECCCCCCEEEEEECCH
SALYPGNAIGSTVLLTTRRPDKLEASLSTQFFTQRYHDGYGLADSFGGNHQTARIANRIG
HHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
KFWFSLSLDRLENDGQPMQYASPNSAYNPKLGAAVPVTGAATDIGPNGKPRTIVGAQNIE
HHHHEEEHHHHCCCCCCCEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCEEEECCCHH
RTEQLNETVRMGYAFTDHVDATLTLGHWENHYRQHGETFLRDAAGNPVYGGNVSIGGRNM
HHHHHHHHHHHCEEEECCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCEE
TVAPSAFAPQRGDQENWLYALGLNGRLDSGWRLSGVVSAYDVSRDVLRAASTAQGGAGTL
EECCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEEEHHHHHHHHHHHHHCCCCCCCEE
FQGDGTGWRTLDLKAEAPEVKGHTFTFGYHYDNYFLRNVTYNTADWLAGPTTSLASVYQG
EECCCCCEEEEEEECCCCCCCCCEEEEEEEECCEEEEEEECCCHHHCCCCCHHHHHHHCC
DTRTQALFAQDAWRFAPGWLATLGLRYERWDAYGGALGNAGGTVGYADRGANALSPKVAL
CCHHHHHHHHHHHHCCCCHHHHHCCEEEEHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
QWDATDVWRFRVSFATGTRFPTVGELFQGTISNNAIVNNNPGLRPEKAIDWDFTAERDVG
EECCCEEEEEEEEEECCCCCCCHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCC
VGVVRASVFQSDLRDSIYSQTTVSGASTVTNISNVDRVRVRGVELGFSGRNVGLRGLDID
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCEEEEEEEEECCCCCCCCEEEEECC
ANVSASNAQILADTANPAYVGSRFPRIPRMRANLLASYRFDEHWLASVGVRYSGRQFNTL
CCCCCCCCEEEEECCCCCHHCCCCCCCCHHHHHHHHHCCCCHHHHHHCCEEECCCEECCC
DNSDVNPDVYGGTSSFTVVDLKARYRFDRHWTASVGIDNLTDRRYYVFHPYPGRTFFGEL
CCCCCCCCCCCCCCCEEEEEEEEHEEECCEEEEECCCCCCCCCEEEEEECCCCCCEEEEE
KWSL
EECC
>Mature Secondary Structure 
SFTFAARPSRGRLALACAAAFAWPAAQAAAIDRASAEPVPGGAGNPAGRAAPVAAVVPA
CEEECCCCCCCCEEEEEHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECC
PPGDTLTEVSVTARRQPVDPDTPAVVESITREQIDAHTNVTTEDALKYAPNLMVRKRYIG
CCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCEEEHHHCC
DRNSVFAGRDFNELQSARGLVYADGLLLSNLLGSSYAYPPRWSLIAPDDVERVDVLYGPF
CCCCEECCCCHHHHHHHCCEEEECHHHHHHHHCCCCCCCCCCEEECCCCCCEEEEEECCH
SALYPGNAIGSTVLLTTRRPDKLEASLSTQFFTQRYHDGYGLADSFGGNHQTARIANRIG
HHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
KFWFSLSLDRLENDGQPMQYASPNSAYNPKLGAAVPVTGAATDIGPNGKPRTIVGAQNIE
HHHHEEEHHHHCCCCCCCEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCEEEECCCHH
RTEQLNETVRMGYAFTDHVDATLTLGHWENHYRQHGETFLRDAAGNPVYGGNVSIGGRNM
HHHHHHHHHHHCEEEECCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCEE
TVAPSAFAPQRGDQENWLYALGLNGRLDSGWRLSGVVSAYDVSRDVLRAASTAQGGAGTL
EECCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEEEHHHHHHHHHHHHHCCCCCCCEE
FQGDGTGWRTLDLKAEAPEVKGHTFTFGYHYDNYFLRNVTYNTADWLAGPTTSLASVYQG
EECCCCCEEEEEEECCCCCCCCCEEEEEEEECCEEEEEEECCCHHHCCCCCHHHHHHHCC
DTRTQALFAQDAWRFAPGWLATLGLRYERWDAYGGALGNAGGTVGYADRGANALSPKVAL
CCHHHHHHHHHHHHCCCCHHHHHCCEEEEHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
QWDATDVWRFRVSFATGTRFPTVGELFQGTISNNAIVNNNPGLRPEKAIDWDFTAERDVG
EECCCEEEEEEEEEECCCCCCCHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCC
VGVVRASVFQSDLRDSIYSQTTVSGASTVTNISNVDRVRVRGVELGFSGRNVGLRGLDID
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCEEEEEEEEECCCCCCCCEEEEECC
ANVSASNAQILADTANPAYVGSRFPRIPRMRANLLASYRFDEHWLASVGVRYSGRQFNTL
CCCCCCCCEEEEECCCCCHHCCCCCCCCHHHHHHHHHCCCCHHHHHHCCEEECCCEECCC
DNSDVNPDVYGGTSSFTVVDLKARYRFDRHWTASVGIDNLTDRRYYVFHPYPGRTFFGEL
CCCCCCCCCCCCCCCEEEEEEEEHEEECCEEEEECCCCCCCCCEEEEEECCCCCCEEEEE
KWSL
EECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA