| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is 115350828
Identifier: 115350828
GI number: 115350828
Start: 863246
End: 864130
Strand: Direct
Name: 115350828
Synonym: Bamb_0774
Alternate gene names: NA
Gene position: 863246-864130 (Clockwise)
Preceding gene: 115350827
Following gene: 115350829
Centisome position: 24.27
GC content: 67.68
Gene sequence:
>885_bases ATGAGCGAATCCCAGATCATCGAAGTCCCGTCCGCCGACTGGAGCGGACACAACCTGTCGGCGCCGCGCGAGCAGCTGCT GGCCGCGGTCGAGGAAGGCAAGGTGCTGTATTTCCCGCACCTGCGCTTCGCGATCGAAGGCGGCGAGGAAGCGCTGCTCG ATCCGTCGCTCGCCGATCCGAAACGCAAGAACATCAGCCTCGCGCCGAACGGCGGCGTGCTCGCCGGCGTGCTCGGCGAC AGCGTCACGCAGTCGGCCGTGCGCGCGCTCGTCGCGCGCTTCCAGCAGCAGGCCGGCACGCTCGTCGACGGTCTCTTTCC CGAATACCGCGGCAAGCTGCGCGTCGCGCCGACGAGCCTGCGGCTGATGCAGGTCGAGACGCGCCAGACGTCCTGGCGCA AGGACGACAGCCGGCTGCACGTCGACGCGTTCCCGTCGCGGCCGAACTACGGCGAGCGGATCCTGCGTGTGTTCACGAAC GTGAACCCGGCCGGCCAGCCGCGCGTGTGGCGCGTCGGCGAGCCGTTCGAGGACGTCGCGAAGCGCTTCCTGCCGAAGAT CCGGCCGCAGTTGCCGGGCTCGGCGTGGCTGCTGAACCTGCTGCACGTGACGAAGTCGCCGCGCAGCGCGTACGACCACC TGATGCTGAACCTGCACGACGGGATGAAGGCTGATCTCGACTACCAGAAGACCTGTCCGCAGCAGACGATGCCGTTTCCG CCCGGCAGCGTGTGGATATGTTTCTCGGATCAGACTTCGCACGCTGTGATGTCCGGCCAGTTCATGCTCGAGCAGACCTT CTTCCTGCCGGTCGACGCGATGGTGCGGCGCGAATGCGCGCCGCTGGGAATTCTCGAGCGCCTGACCGGCCGGGCGCTGG TTTGA
Upstream 100 bases:
>100_bases CAGGTGAAGGCGGCGCTCGCGGGCTTCGGTCTGCTGTGATGCACGTCACGCCTGTCCTGTCTCTCCTGCCCCTCCTGCAC GTCACGCACGCGAACCGATC
Downstream 100 bases:
>100_bases CCGCGCCCCGCATCCTTCGCGGTGACGGAGCCCGTTCATGCTGAGGGCGATCTATCGCGCGCTGTGGTGGCTCGTCGCGC CGATCGCCGTCATCCGCCTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 294; Mature: 293
Protein sequence:
>294_residues MSESQIIEVPSADWSGHNLSAPREQLLAAVEEGKVLYFPHLRFAIEGGEEALLDPSLADPKRKNISLAPNGGVLAGVLGD SVTQSAVRALVARFQQQAGTLVDGLFPEYRGKLRVAPTSLRLMQVETRQTSWRKDDSRLHVDAFPSRPNYGERILRVFTN VNPAGQPRVWRVGEPFEDVAKRFLPKIRPQLPGSAWLLNLLHVTKSPRSAYDHLMLNLHDGMKADLDYQKTCPQQTMPFP PGSVWICFSDQTSHAVMSGQFMLEQTFFLPVDAMVRRECAPLGILERLTGRALV
Sequences:
>Translated_294_residues MSESQIIEVPSADWSGHNLSAPREQLLAAVEEGKVLYFPHLRFAIEGGEEALLDPSLADPKRKNISLAPNGGVLAGVLGD SVTQSAVRALVARFQQQAGTLVDGLFPEYRGKLRVAPTSLRLMQVETRQTSWRKDDSRLHVDAFPSRPNYGERILRVFTN VNPAGQPRVWRVGEPFEDVAKRFLPKIRPQLPGSAWLLNLLHVTKSPRSAYDHLMLNLHDGMKADLDYQKTCPQQTMPFP PGSVWICFSDQTSHAVMSGQFMLEQTFFLPVDAMVRRECAPLGILERLTGRALV >Mature_293_residues SESQIIEVPSADWSGHNLSAPREQLLAAVEEGKVLYFPHLRFAIEGGEEALLDPSLADPKRKNISLAPNGGVLAGVLGDS VTQSAVRALVARFQQQAGTLVDGLFPEYRGKLRVAPTSLRLMQVETRQTSWRKDDSRLHVDAFPSRPNYGERILRVFTNV NPAGQPRVWRVGEPFEDVAKRFLPKIRPQLPGSAWLLNLLHVTKSPRSAYDHLMLNLHDGMKADLDYQKTCPQQTMPFPP GSVWICFSDQTSHAVMSGQFMLEQTFFLPVDAMVRRECAPLGILERLTGRALV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32808; Mature: 32677
Theoretical pI: Translated: 8.48; Mature: 8.48
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSESQIIEVPSADWSGHNLSAPREQLLAAVEEGKVLYFPHLRFAIEGGEEALLDPSLADP CCCCCEEECCCCCCCCCCCCCCHHHHHHHHHCCCEEEECCEEEEEECCCHHCCCCCCCCC KRKNISLAPNGGVLAGVLGDSVTQSAVRALVARFQQQAGTLVDGLFPEYRGKLRVAPTSL CCCCEEECCCCCEEEEHHCCHHHHHHHHHHHHHHHHHHCHHHHHCCHHHCCCEEECCCCE RLMQVETRQTSWRKDDSRLHVDAFPSRPNYGERILRVFTNVNPAGQPRVWRVGEPFEDVA EEEEEEHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEECCCCHHHHH KRFLPKIRPQLPGSAWLLNLLHVTKSPRSAYDHLMLNLHDGMKADLDYQKTCPQQTMPFP HHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHEEEECCCCCCCCCCHHHCCCCCCCCCC PGSVWICFSDQTSHAVMSGQFMLEQTFFLPVDAMVRRECAPLGILERLTGRALV CCCEEEEECCCCCCHHHCCCEEEEHEECCCHHHHHHHHCCCHHHHHHHCCCCCC >Mature Secondary Structure SESQIIEVPSADWSGHNLSAPREQLLAAVEEGKVLYFPHLRFAIEGGEEALLDPSLADP CCCCEEECCCCCCCCCCCCCCHHHHHHHHHCCCEEEECCEEEEEECCCHHCCCCCCCCC KRKNISLAPNGGVLAGVLGDSVTQSAVRALVARFQQQAGTLVDGLFPEYRGKLRVAPTSL CCCCEEECCCCCEEEEHHCCHHHHHHHHHHHHHHHHHHCHHHHHCCHHHCCCEEECCCCE RLMQVETRQTSWRKDDSRLHVDAFPSRPNYGERILRVFTNVNPAGQPRVWRVGEPFEDVA EEEEEEHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEECCCCHHHHH KRFLPKIRPQLPGSAWLLNLLHVTKSPRSAYDHLMLNLHDGMKADLDYQKTCPQQTMPFP HHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHEEEECCCCCCCCCCHHHCCCCCCCCCC PGSVWICFSDQTSHAVMSGQFMLEQTFFLPVDAMVRRECAPLGILERLTGRALV CCCEEEEECCCCCCHHHCCCEEEEHEECCCHHHHHHHHCCCHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA