Click here to switch to the map view.

The map label for this gene is rfaC [H]

Identifier: 115350827

GI number: 115350827

Start: 862189

End: 863184

Strand: Direct

Name: rfaC [H]

Synonym: Bamb_0773

Alternate gene names: 115350827

Gene position: 862189-863184 (Clockwise)

Preceding gene: 115350826

Following gene: 115350828

Centisome position: 24.24

GC content: 71.69

Gene sequence:

>996_bases
GTGCAAAAGATCCTGATCGTGCGCGTGTCGTCGCTGGGCGACGTCGTGCACAACATGCCGGTGATCGCCGATATCCGGCG
CCGCCACCCCGATGCGCAGATCGACTGGCTCGTCGAGGAGAGCTTCGTCGACCTCGTGCGGCTCGTCGACGGCGTGCGCA
ACGTGCTGCCGTTCTCGCTGCGCCGCTGGCGCAAGAAGCCGCTCTCGGGCGCGACGTGGCGCGAGATCCGCGCGTTCCGC
AAGCGGCTCGTGGCCGAACAGTACGACCTCGTGATCGACTGCCAGGGTCTGATCAAGACGGCCTGGGTCGCGAGCTGGGC
GCGCGGCCCGCTCGCCGGTCTCGGCAACCGCACGGACGGCGCCGGCTACGAATGGCCGGTGCGCTTCTTCTATCGCCAGC
GCGTGCCGATCGCGCCGCGCACGCACGTGGTCGAGCGCTCGCGCCAGCTGGTCGCGGCCGCGCTGGGCGACCCGGCGCCG
ACGCCGGCCGATCCGGTCGATTTCGGTCTCGATACGCGCGCAGCGGCGCTCGCGGTCGCGGCGCTGGGCCTGAACCTGCC
GGTGCCGTACGTGGTGTTCGTGCACGCGACCTCGCGTGCCGACAAGCAGTGGCCGGACGCCGCATGGATCGAGCTCGGCC
AGGCGCTCGTGCGGCGCGGCGCGTCGCTCGTGCTGCCGTGGGGCAACGACGCGGAGCGCGCGACCAGCGAGCGGCTCGCG
AAGGAGTTCGGCGCGGCGGCGATCGTGCCGCCGAAGCTGTCGCTGCCGGCCGTCGTCGGCCTGATCGACGGCGCGGCCGC
GACCGTCGGGGTTGATACAGGTCTGGTTCACATCGCGGCCGCGCTCAAGCGTCCGACGGTCGAACTGTACAATTTCGCTA
CGGCCTGGCGCACCGGCGGCTACTGGTCGCCGAACGTCGTCAATCTCGGCACGGCGGGGCAGCCGCCGTCGATCGCGCAG
GTGAAGGCGGCGCTCGCGGGCTTCGGTCTGCTGTGA

Upstream 100 bases:

>100_bases
CGCTCACGCGTGCGGCCGCTTTTTGTCTGTCTGACGTCCCGGGCGCGATAAAATCGCGTCTTTATGCCTGTCGCCGGCTA
TCCGCCGGCGTTTTTTCAGC

Downstream 100 bases:

>100_bases
TGCACGTCACGCCTGTCCTGTCTCTCCTGCCCCTCCTGCACGTCACGCACGCGAACCGATCATGAGCGAATCCCAGATCA
TCGAAGTCCCGTCCGCCGAC

Product: lipopolysaccharide heptosyltransferase I

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 331; Mature: 331

Protein sequence:

>331_residues
MQKILIVRVSSLGDVVHNMPVIADIRRRHPDAQIDWLVEESFVDLVRLVDGVRNVLPFSLRRWRKKPLSGATWREIRAFR
KRLVAEQYDLVIDCQGLIKTAWVASWARGPLAGLGNRTDGAGYEWPVRFFYRQRVPIAPRTHVVERSRQLVAAALGDPAP
TPADPVDFGLDTRAAALAVAALGLNLPVPYVVFVHATSRADKQWPDAAWIELGQALVRRGASLVLPWGNDAERATSERLA
KEFGAAAIVPPKLSLPAVVGLIDGAAATVGVDTGLVHIAAALKRPTVELYNFATAWRTGGYWSPNVVNLGTAGQPPSIAQ
VKAALAGFGLL

Sequences:

>Translated_331_residues
MQKILIVRVSSLGDVVHNMPVIADIRRRHPDAQIDWLVEESFVDLVRLVDGVRNVLPFSLRRWRKKPLSGATWREIRAFR
KRLVAEQYDLVIDCQGLIKTAWVASWARGPLAGLGNRTDGAGYEWPVRFFYRQRVPIAPRTHVVERSRQLVAAALGDPAP
TPADPVDFGLDTRAAALAVAALGLNLPVPYVVFVHATSRADKQWPDAAWIELGQALVRRGASLVLPWGNDAERATSERLA
KEFGAAAIVPPKLSLPAVVGLIDGAAATVGVDTGLVHIAAALKRPTVELYNFATAWRTGGYWSPNVVNLGTAGQPPSIAQ
VKAALAGFGLL
>Mature_331_residues
MQKILIVRVSSLGDVVHNMPVIADIRRRHPDAQIDWLVEESFVDLVRLVDGVRNVLPFSLRRWRKKPLSGATWREIRAFR
KRLVAEQYDLVIDCQGLIKTAWVASWARGPLAGLGNRTDGAGYEWPVRFFYRQRVPIAPRTHVVERSRQLVAAALGDPAP
TPADPVDFGLDTRAAALAVAALGLNLPVPYVVFVHATSRADKQWPDAAWIELGQALVRRGASLVLPWGNDAERATSERLA
KEFGAAAIVPPKLSLPAVVGLIDGAAATVGVDTGLVHIAAALKRPTVELYNFATAWRTGGYWSPNVVNLGTAGQPPSIAQ
VKAALAGFGLL

Specific function: Heptose transfer to the lipopolysaccharide core. It transfers the innnermost heptose to [4'-P](3-deoxy-D-manno- octulosonic acid)2-IVA [H]

COG id: COG0859

COG function: function code M; ADP-heptose:LPS heptosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 9 family [H]

Homologues:

Organism=Escherichia coli, GI1790051, Length=309, Percent_Identity=37.8640776699029, Blast_Score=188, Evalue=4e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002201
- InterPro:   IPR011908 [H]

Pfam domain/function: PF01075 Glyco_transf_9 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 35955; Mature: 35955

Theoretical pI: Translated: 10.51; Mature: 10.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKILIVRVSSLGDVVHNMPVIADIRRRHPDAQIDWLVEESFVDLVRLVDGVRNVLPFSL
CCCEEEEEEHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRWRKKPLSGATWREIRAFRKRLVAEQYDLVIDCQGLIKTAWVASWARGPLAGLGNRTDG
HHHHCCCCCCCHHHHHHHHHHHHHHHHHCEEEECHHHHHHHHHHHHHCCCCCCCCCCCCC
AGYEWPVRFFYRQRVPIAPRTHVVERSRQLVAAALGDPAPTPADPVDFGLDTRAAALAVA
CCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHH
ALGLNLPVPYVVFVHATSRADKQWPDAAWIELGQALVRRGASLVLPWGNDAERATSERLA
HHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHH
KEFGAAAIVPPKLSLPAVVGLIDGAAATVGVDTGLVHIAAALKRPTVELYNFATAWRTGG
HHHCCCEECCCCCCHHHHHHHHCCCHHEEECHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
YWSPNVVNLGTAGQPPSIAQVKAALAGFGLL
CCCCCEEECCCCCCCCHHHHHHHHHHHCCCC
>Mature Secondary Structure
MQKILIVRVSSLGDVVHNMPVIADIRRRHPDAQIDWLVEESFVDLVRLVDGVRNVLPFSL
CCCEEEEEEHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRWRKKPLSGATWREIRAFRKRLVAEQYDLVIDCQGLIKTAWVASWARGPLAGLGNRTDG
HHHHCCCCCCCHHHHHHHHHHHHHHHHHCEEEECHHHHHHHHHHHHHCCCCCCCCCCCCC
AGYEWPVRFFYRQRVPIAPRTHVVERSRQLVAAALGDPAPTPADPVDFGLDTRAAALAVA
CCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHH
ALGLNLPVPYVVFVHATSRADKQWPDAAWIELGQALVRRGASLVLPWGNDAERATSERLA
HHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHH
KEFGAAAIVPPKLSLPAVVGLIDGAAATVGVDTGLVHIAAALKRPTVELYNFATAWRTGG
HHHCCCEECCCCCCHHHHHHHHCCCHHEEECHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
YWSPNVVNLGTAGQPPSIAQVKAALAGFGLL
CCCCCEEECCCCCCCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Transferases; Glycosyltransferases [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8478319; 8041620; 9278503; 1624462 [H]