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The map label for this gene is rfbD [H]

Identifier: 115350798

GI number: 115350798

Start: 823749

End: 824531

Strand: Direct

Name: rfbD [H]

Synonym: Bamb_0744

Alternate gene names: 115350798

Gene position: 823749-824531 (Clockwise)

Preceding gene: 115350796

Following gene: 115350799

Centisome position: 23.16

GC content: 57.09

Gene sequence:

>783_bases
ATGCTGACCCTTTCACTTGCTGACCTAAAGAAAAGCATCACGGCGTGGCGGTTATGGACCCTGCTTGGCTGGCTCGAAAT
CCGGCAACGCTATGCGCGCTCGCGCTTGGGGCCGTTCTGGCTCACGATCAGTATGGGCGTGATGATCACGTCGTTGGGCG
TGGTCTACGGTACGTTGTTCGGGCAAAAAATCAACGAATATCTGCCGTTTCTTGCCGCGAGCATCGTGCTGTGGGGTTTG
TTTTCGACGACCATCGTGGAAGGCAGCACCGCGTATATCAGCAGCGCGCCCTATATTCGGCAAATGTCCACGCCGAAACT
GATCTACATCCTGCAGGTCGTGTGGCGAAACATCATCGTCCTCGCTCACAACTTCGTGATCGTTGTCGCGCTGCTGGCAA
TCTTCGGTGTGAAGAGTTGGGCGACGTTGCCGGTGTTCATTCCGGCACTGCTGGTGTATGTCCTGAACGCCACGTGGATC
GCAATGGTGGTGGGCCTTCTGTCGGCACGCTTTCGCGACCTGCCGCAGATCGTCAGCGCATTGCTTCAGGTTGCGTTCTA
CGTCACACCGATCATTTTCCGCCCAGATGCGCTGAATCGCTTCTCGTTCATTGTCGAGTGGAATCCGCTCGCGTATTTGA
TCGACCTCGTGCGCGGCCCGCTGATCGGGCAAATGCCCAGTGAATTGACCTGGGGCGTGACGATTGGCATGGCGGCGATC
GGTTGGCCTGTCGCCATGTTGATGACCGGGCGTTATCTGAAGCGCATTCCGTACTGGGTCTGA

Upstream 100 bases:

>100_bases
CGCGGCCCTGTGCTCCCATTTGCGGCGCTGGTTACTGCGGCGGGCGTGGGCTCATTGATGGGCCGGGGTGCCCCCTATTC
TTTCATTTTTGAATGCTTGC

Downstream 100 bases:

>100_bases
GAGAGACGATATGGCGTTTATCGAATTGCAGAGCGTAACGCTCGATTTGCCGATTTTCGATGTGCAGGGGCGCTCGCTCA
AGAAGCAGGTGCTCAACATG

Product: ABC-2 type transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MLTLSLADLKKSITAWRLWTLLGWLEIRQRYARSRLGPFWLTISMGVMITSLGVVYGTLFGQKINEYLPFLAASIVLWGL
FSTTIVEGSTAYISSAPYIRQMSTPKLIYILQVVWRNIIVLAHNFVIVVALLAIFGVKSWATLPVFIPALLVYVLNATWI
AMVVGLLSARFRDLPQIVSALLQVAFYVTPIIFRPDALNRFSFIVEWNPLAYLIDLVRGPLIGQMPSELTWGVTIGMAAI
GWPVAMLMTGRYLKRIPYWV

Sequences:

>Translated_260_residues
MLTLSLADLKKSITAWRLWTLLGWLEIRQRYARSRLGPFWLTISMGVMITSLGVVYGTLFGQKINEYLPFLAASIVLWGL
FSTTIVEGSTAYISSAPYIRQMSTPKLIYILQVVWRNIIVLAHNFVIVVALLAIFGVKSWATLPVFIPALLVYVLNATWI
AMVVGLLSARFRDLPQIVSALLQVAFYVTPIIFRPDALNRFSFIVEWNPLAYLIDLVRGPLIGQMPSELTWGVTIGMAAI
GWPVAMLMTGRYLKRIPYWV
>Mature_260_residues
MLTLSLADLKKSITAWRLWTLLGWLEIRQRYARSRLGPFWLTISMGVMITSLGVVYGTLFGQKINEYLPFLAASIVLWGL
FSTTIVEGSTAYISSAPYIRQMSTPKLIYILQVVWRNIIVLAHNFVIVVALLAIFGVKSWATLPVFIPALLVYVLNATWI
AMVVGLLSARFRDLPQIVSALLQVAFYVTPIIFRPDALNRFSFIVEWNPLAYLIDLVRGPLIGQMPSELTWGVTIGMAAI
GWPVAMLMTGRYLKRIPYWV

Specific function: May form an ATP-driven O-antigen export apparatus, in association with rfbE [H]

COG id: COG1682

COG function: function code GM; ABC-type polysaccharide/polyol phosphate export systems, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 29343; Mature: 29343

Theoretical pI: Translated: 10.50; Mature: 10.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTLSLADLKKSITAWRLWTLLGWLEIRQRYARSRLGPFWLTISMGVMITSLGVVYGTLF
CCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
GQKINEYLPFLAASIVLWGLFSTTIVEGSTAYISSAPYIRQMSTPKLIYILQVVWRNIIV
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHCCCCHHHHHHHHHHHHHHH
LAHNFVIVVALLAIFGVKSWATLPVFIPALLVYVLNATWIAMVVGLLSARFRDLPQIVSA
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLQVAFYVTPIIFRPDALNRFSFIVEWNPLAYLIDLVRGPLIGQMPSELTWGVTIGMAAI
HHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
GWPVAMLMTGRYLKRIPYWV
HHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MLTLSLADLKKSITAWRLWTLLGWLEIRQRYARSRLGPFWLTISMGVMITSLGVVYGTLF
CCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
GQKINEYLPFLAASIVLWGLFSTTIVEGSTAYISSAPYIRQMSTPKLIYILQVVWRNIIV
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHCCCCHHHHHHHHHHHHHHH
LAHNFVIVVALLAIFGVKSWATLPVFIPALLVYVLNATWIAMVVGLLSARFRDLPQIVSA
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLQVAFYVTPIIFRPDALNRFSFIVEWNPLAYLIDLVRGPLIGQMPSELTWGVTIGMAAI
HHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
GWPVAMLMTGRYLKRIPYWV
HHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7692217 [H]