Definition Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence.
Accession NC_008390
Length 3,556,545

Click here to switch to the map view.

The map label for this gene is 115350743

Identifier: 115350743

GI number: 115350743

Start: 767200

End: 767655

Strand: Direct

Name: 115350743

Synonym: Bamb_0689

Alternate gene names: NA

Gene position: 767200-767655 (Clockwise)

Preceding gene: 115350742

Following gene: 115350747

Centisome position: 21.57

GC content: 68.42

Gene sequence:

>456_bases
ATGAGACGGCCTGCGCGAATGCGCCGAACAGCGGCGTTCACGTTGCTCGAACTGATGATCGTGCTCGCGATCGTCGCCGT
GCTGGCCGGGTGGGGGATCCCGTCGTATCGCGAGCATGTCGCGCGCATGCATCGCGCATCCGCGGTGGCCGCGCTGTACC
GTGCGGCTCAATATCTCGAAATGCTCGACGGCCCGCCGCCGCAGAGCTTGCCGGACACCTATGCGCAGGCGCCGCCGGAC
GGGGCGGCGGTCTATCGCGTCGCGCTGCGGCGAGCGGTCGGCGATGATGCAGCGGTCGTATATGAACTCGTTGCGAGCCC
GCTCGATGCGGGCCCGATGCGCGACGACGCATGCGGCGCATTCACGCTGCGTTCGGACGGGACGAAAGGCAATGCGGGAT
CGATTGACGGCGGCGAGGCCGATGCGCGGGAGCGCACATGCTGGGGCGTGCGTTGA

Upstream 100 bases:

>100_bases
GCGGCCATGCGTCGAGCGTGGTCTGGCTGCAGAGTCAGGTCGCGCTGCGCGACGGACGCATCGTTGCGCAGCGCTGGCGT
CGCGTCGCGGCGGTGCATCG

Downstream 100 bases:

>100_bases
TCACCGCCGCCGCCGTCGCCGTCTGCTGCCGCCGCGGCAACCGCTGGAAGGCGCGCGGAAAACGCGCAACGGCCCAGAGC
CGTGCGCGTTTGTCGTTACG

Product: putative Tfp pilus assembly protein PilE

Products: NA

Alternate protein names: Type IV Pilus Biogenesis Protein; Fimbrial Protein

Number of amino acids: Translated: 151; Mature: 151

Protein sequence:

>151_residues
MRRPARMRRTAAFTLLELMIVLAIVAVLAGWGIPSYREHVARMHRASAVAALYRAAQYLEMLDGPPPQSLPDTYAQAPPD
GAAVYRVALRRAVGDDAAVVYELVASPLDAGPMRDDACGAFTLRSDGTKGNAGSIDGGEADARERTCWGVR

Sequences:

>Translated_151_residues
MRRPARMRRTAAFTLLELMIVLAIVAVLAGWGIPSYREHVARMHRASAVAALYRAAQYLEMLDGPPPQSLPDTYAQAPPD
GAAVYRVALRRAVGDDAAVVYELVASPLDAGPMRDDACGAFTLRSDGTKGNAGSIDGGEADARERTCWGVR
>Mature_151_residues
MRRPARMRRTAAFTLLELMIVLAIVAVLAGWGIPSYREHVARMHRASAVAALYRAAQYLEMLDGPPPQSLPDTYAQAPPD
GAAVYRVALRRAVGDDAAVVYELVASPLDAGPMRDDACGAFTLRSDGTKGNAGSIDGGEADARERTCWGVR

Specific function: Unknown

COG id: COG4968

COG function: function code NU; Tfp pilus assembly protein PilE

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16200; Mature: 16200

Theoretical pI: Translated: 8.20; Mature: 8.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRPARMRRTAAFTLLELMIVLAIVAVLAGWGIPSYREHVARMHRASAVAALYRAAQYLE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
MLDGPPPQSLPDTYAQAPPDGAAVYRVALRRAVGDDAAVVYELVASPLDAGPMRDDACGA
HHCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCE
FTLRSDGTKGNAGSIDGGEADARERTCWGVR
EEECCCCCCCCCCCCCCCCCCHHHCCCCCCC
>Mature Secondary Structure
MRRPARMRRTAAFTLLELMIVLAIVAVLAGWGIPSYREHVARMHRASAVAALYRAAQYLE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
MLDGPPPQSLPDTYAQAPPDGAAVYRVALRRAVGDDAAVVYELVASPLDAGPMRDDACGA
HHCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCE
FTLRSDGTKGNAGSIDGGEADARERTCWGVR
EEECCCCCCCCCCCCCCCCCCHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA