| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is recG [H]
Identifier: 115350668
GI number: 115350668
Start: 686999
End: 689356
Strand: Direct
Name: recG [H]
Synonym: Bamb_0614
Alternate gene names: 115350668
Gene position: 686999-689356 (Clockwise)
Preceding gene: 115350662
Following gene: 115350669
Centisome position: 19.32
GC content: 71.84
Gene sequence:
>2358_bases ATGCCTGTGTCACCACGCCGTTCCTCCGCCGCCGTTGCCGATTCCGCCGATCCGTTCGACGCGGACGATGCCGCGTTACC CGCGCGAAGCGCGGGGGAGCGCGACTCCGACGCGCGCGCGGCGCCGAAGCGTGCGGGGCCGAAGCGCGGCGCCGACGGGC GGCTCGCGCAGCCGGCCGCCGCCGCGCCCGACGTCGAACCGGGCGCCGGCAGCGACGAGGCGGGCGTTGCGGCGGCATCG GGCGCGTCCGATGCATCCGGCGCGAAGCGCAAGAAGAAGCCGGCCGCCGACAAACCCGTGAAGACCGCCGACAAGCTCGC GAAGCTCGGCCTCACGCGCTCGATCGATCTCGTGCTGCATCTGCCGATGCGCTACGAGGACGAAACCACGCTCACGCCGA TCGGCGAACTGCTGCCGGGCGGCATCGCGCAGACCGAAGGCGTCGTGTTCGACAACGAAGTCGCGTACCGGCCGCGCCGC CAGCTCGTCGTGAAGATCCAGGACGACGACGGCGAGCAGCTCGTGCTGCGCTTCCTGAATTTCTACGGCTCGCAGGTCAA GCAGATGGCCGTCGGCCAGCGGCTGCGCGTGCGCGGCGATGTGCGCGGCGGCTTCTTCGGGATGGAGATGGTGCATCCGG CCGTGCGCGTGGTCGAAGTCGATGCGCCGCTGCCGCAGGTGCTCACGCCCGTCTATCCGAGCACGGCCGGCGTGTCGCAG GCGTATCTGCGCAAGGCGATCGAGAACGCGGTCGAGCGCACGCCGTTGCCCGAGCTGCTGCCGCCCGAGATCGAGCGCGA CTACCTGAAGCCGCTCGGCGTGCCGACGCTCGCGCAGGCCGTGCGGATCCTGCATCACCCGGGCGTCGATTCCGACGAAG CCGCGCTGATGGACGGCTCGCATCCGGCGTGGACGCGCATCAAGTTCGAGGAGCTGCTCGCGCAGCAGCTGTCGCTCAAG CGCGCGCACGAGGAGCGCCGCACGCGCACGGCGCCCGCGATGCCGCGTCGCGCCGCGACCGATGCCGACGCGCTGACCAC GCGCCTCTACGCGGCGCTGCCGTTCACGCTGACGGGCGCGCAGGCGCGCGTCGTCGACGAGATCGCGCACGACCTCACGC TTCCGCATCCGATGCAGCGGCTGTTGCAGGGCGACGTCGGCAGCGGCAAGACGGTCGTCGCCGCGCTGGCCGCGACGCAG GCGATCGATGCCGGCTACCAGGCCGCGCTGATGGCGCCGACCGAAATCCTCGCTGAGCAGCACGCCCGCAAGCTGCGCGC GTGGCTCGAGCCGCTCGGCGTGTCGGTCGCGTGGCTCGCGGGCAGCCTGAAGGCGAAGGAGAAGCGCGCGGCGATCGAGG CCGCGGCGCTCGGCACCGCGCAGCTCGTGATCGGCACGCACGCGATCATCCAGGACACGGTCGAATTCGCGCGGCTCGGC CTCGTGATCGTCGACGAGCAGCACCGCTTCGGCGTCGAGCAGCGTCTCGCGCTGCGGGCGAAGGCCGCGAATGCGGCCAA CGGCGCGCGCGATTTCCAGCCGCACCAGCTGATGATGTCGGCCACGCCGATTCCGCGCACGCTCGCGATGACGTATTACG CGGATCTCGAGGTGTCGACGATCGACGAGCTGCCTCCGGGCCGCACGCCGGTGCTGACGCGCCTCGTCGGCGACGCGCGG CGCGAGGAGGTGATCGCGCGCGTGCGCGAGGCCGCGCTGACTGGCCGCCAGGTGTACTGGGTGTGTCCGCTGATCGAGGA GAGCGAGACGCTGCAGTTGCAGACGGCCGTCGAAACCTACGAGACGCTGGCCGCGGCCCTGCCCGAGTTGAAGGTCGGGC TCGTGCACGGCAGGCTGTCGCCGGCCGACAAGGCGGCCGTGATGGAAGCCTTCACGCGCAACGAGGTGCAGCTGCTCGTC GCGACGACCGTGATCGAGGTCGGCGTCGACGTGCCGAACGCGTCGCTTATGGTGATCGAGCACGCGGAGCGCTTCGGCCT CGCGCAACTGCACCAGCTGCGCGGCCGGGTCGGGCGCGGCACCGCGGCATCGGTGTGCGTGCTGCTGTACACGGGCCCGC TGTCGCTCACCGGCCGCGAGCGGCTGAAGACGATGCGCGAGACGACCGACGGCTTCGAGATCGCGCGGCGCGACCTCGAG ATCCGCGGCCCCGGCGAATTCCTCGGCGCGCGCCAGTCGGGCGCGGCGATGCTGCGCTTCGCGAACCTCGAGACCGACGG CTGGCTGATCGACCCGGCCCGCGACGCGGCGGCGCGGCTGATCGCCGCGTATCCCGACGTCGTCACGCAGCATCTCGCCC GCTGGCTCGGCGCGCGGGAGCAGTATCTGAAGGCGTGA
Upstream 100 bases:
>100_bases GCCGCTATGATGGCGGGATGCGCGGCCTGGCCGGCGTCGTTCGTTCGGACGACGTGAAAGCCGCTATTGTACTTGCCTTG CGAAGCACCCAGACGATCCG
Downstream 100 bases:
>100_bases TCGACGTATTGAGGGCTAGACCGGAAATCGAAATTCGCCGCGCTTCGGCGCATTGCAATACTGAGAAACTTGGCGAATCG GTCCCAGTGGGTGTATAAAT
Product: ATP-dependent DNA helicase RecG
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 785; Mature: 784
Protein sequence:
>785_residues MPVSPRRSSAAVADSADPFDADDAALPARSAGERDSDARAAPKRAGPKRGADGRLAQPAAAAPDVEPGAGSDEAGVAAAS GASDASGAKRKKKPAADKPVKTADKLAKLGLTRSIDLVLHLPMRYEDETTLTPIGELLPGGIAQTEGVVFDNEVAYRPRR QLVVKIQDDDGEQLVLRFLNFYGSQVKQMAVGQRLRVRGDVRGGFFGMEMVHPAVRVVEVDAPLPQVLTPVYPSTAGVSQ AYLRKAIENAVERTPLPELLPPEIERDYLKPLGVPTLAQAVRILHHPGVDSDEAALMDGSHPAWTRIKFEELLAQQLSLK RAHEERRTRTAPAMPRRAATDADALTTRLYAALPFTLTGAQARVVDEIAHDLTLPHPMQRLLQGDVGSGKTVVAALAATQ AIDAGYQAALMAPTEILAEQHARKLRAWLEPLGVSVAWLAGSLKAKEKRAAIEAAALGTAQLVIGTHAIIQDTVEFARLG LVIVDEQHRFGVEQRLALRAKAANAANGARDFQPHQLMMSATPIPRTLAMTYYADLEVSTIDELPPGRTPVLTRLVGDAR REEVIARVREAALTGRQVYWVCPLIEESETLQLQTAVETYETLAAALPELKVGLVHGRLSPADKAAVMEAFTRNEVQLLV ATTVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLLYTGPLSLTGRERLKTMRETTDGFEIARRDLE IRGPGEFLGARQSGAAMLRFANLETDGWLIDPARDAAARLIAAYPDVVTQHLARWLGAREQYLKA
Sequences:
>Translated_785_residues MPVSPRRSSAAVADSADPFDADDAALPARSAGERDSDARAAPKRAGPKRGADGRLAQPAAAAPDVEPGAGSDEAGVAAAS GASDASGAKRKKKPAADKPVKTADKLAKLGLTRSIDLVLHLPMRYEDETTLTPIGELLPGGIAQTEGVVFDNEVAYRPRR QLVVKIQDDDGEQLVLRFLNFYGSQVKQMAVGQRLRVRGDVRGGFFGMEMVHPAVRVVEVDAPLPQVLTPVYPSTAGVSQ AYLRKAIENAVERTPLPELLPPEIERDYLKPLGVPTLAQAVRILHHPGVDSDEAALMDGSHPAWTRIKFEELLAQQLSLK RAHEERRTRTAPAMPRRAATDADALTTRLYAALPFTLTGAQARVVDEIAHDLTLPHPMQRLLQGDVGSGKTVVAALAATQ AIDAGYQAALMAPTEILAEQHARKLRAWLEPLGVSVAWLAGSLKAKEKRAAIEAAALGTAQLVIGTHAIIQDTVEFARLG LVIVDEQHRFGVEQRLALRAKAANAANGARDFQPHQLMMSATPIPRTLAMTYYADLEVSTIDELPPGRTPVLTRLVGDAR REEVIARVREAALTGRQVYWVCPLIEESETLQLQTAVETYETLAAALPELKVGLVHGRLSPADKAAVMEAFTRNEVQLLV ATTVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLLYTGPLSLTGRERLKTMRETTDGFEIARRDLE IRGPGEFLGARQSGAAMLRFANLETDGWLIDPARDAAARLIAAYPDVVTQHLARWLGAREQYLKA >Mature_784_residues PVSPRRSSAAVADSADPFDADDAALPARSAGERDSDARAAPKRAGPKRGADGRLAQPAAAAPDVEPGAGSDEAGVAAASG ASDASGAKRKKKPAADKPVKTADKLAKLGLTRSIDLVLHLPMRYEDETTLTPIGELLPGGIAQTEGVVFDNEVAYRPRRQ LVVKIQDDDGEQLVLRFLNFYGSQVKQMAVGQRLRVRGDVRGGFFGMEMVHPAVRVVEVDAPLPQVLTPVYPSTAGVSQA YLRKAIENAVERTPLPELLPPEIERDYLKPLGVPTLAQAVRILHHPGVDSDEAALMDGSHPAWTRIKFEELLAQQLSLKR AHEERRTRTAPAMPRRAATDADALTTRLYAALPFTLTGAQARVVDEIAHDLTLPHPMQRLLQGDVGSGKTVVAALAATQA IDAGYQAALMAPTEILAEQHARKLRAWLEPLGVSVAWLAGSLKAKEKRAAIEAAALGTAQLVIGTHAIIQDTVEFARLGL VIVDEQHRFGVEQRLALRAKAANAANGARDFQPHQLMMSATPIPRTLAMTYYADLEVSTIDELPPGRTPVLTRLVGDARR EEVIARVREAALTGRQVYWVCPLIEESETLQLQTAVETYETLAAALPELKVGLVHGRLSPADKAAVMEAFTRNEVQLLVA TTVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLLYTGPLSLTGRERLKTMRETTDGFEIARRDLEI RGPGEFLGARQSGAAMLRFANLETDGWLIDPARDAAARLIAAYPDVVTQHLARWLGAREQYLKA
Specific function: Critical role in recombination and DNA repair. Help process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3' to 5' polarity. RecG unwind branched dup
COG id: COG1200
COG function: function code LK; RecG-like helicase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI2367254, Length=691, Percent_Identity=53.1114327062229, Blast_Score=645, Evalue=0.0, Organism=Escherichia coli, GI1787357, Length=393, Percent_Identity=38.4223918575064, Blast_Score=231, Evalue=1e-61,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR011545 - InterPro: IPR004609 - InterPro: IPR001650 - InterPro: IPR014021 - InterPro: IPR016027 - InterPro: IPR004365 [H]
Pfam domain/function: PF00270 DEAD; PF00271 Helicase_C; PF01336 tRNA_anti [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 84715; Mature: 84584
Theoretical pI: Translated: 6.98; Mature: 6.98
Prosite motif: PS00435 PEROXIDASE_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPVSPRRSSAAVADSADPFDADDAALPARSAGERDSDARAAPKRAGPKRGADGRLAQPAA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCC AAPDVEPGAGSDEAGVAAASGASDASGAKRKKKPAADKPVKTADKLAKLGLTRSIDLVLH CCCCCCCCCCCCCCCCEECCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHCCCCEEEEEEE LPMRYEDETTLTPIGELLPGGIAQTEGVVFDNEVAYRPRRQLVVKIQDDDGEQLVLRFLN CCCCCCCCCCCCCHHHHCCCCCCCCCCEEECCCCCCCCCEEEEEEEECCCHHHHHHHHHH FYGSQVKQMAVGQRLRVRGDVRGGFFGMEMVHPAVRVVEVDAPLPQVLTPVYPSTAGVSQ HHHHHHHHHHHCCHHEEEECCCCCEEHHHHHCCCEEEEECCCCCHHHHCCCCCCCCCHHH AYLRKAIENAVERTPLPELLPPEIERDYLKPLGVPTLAQAVRILHHPGVDSDEAALMDGS HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCEECCC HPAWTRIKFEELLAQQLSLKRAHEERRTRTAPAMPRRAATDADALTTRLYAALPFTLTGA CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCEEECCC QARVVDEIAHDLTLPHPMQRLLQGDVGSGKTVVAALAATQAIDAGYQAALMAPTEILAEQ HHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEECCCHHHHHHHH HARKLRAWLEPLGVSVAWLAGSLKAKEKRAAIEAAALGTAQLVIGTHAIIQDTVEFARLG HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC LVIVDEQHRFGVEQRLALRAKAANAANGARDFQPHQLMMSATPIPRTLAMTYYADLEVST EEEEECHHHCCHHHHHHHHHHHCCCCCCCCCCCCHHEEEECCCCCHHEEEEEEECCEEEH IDELPPGRTPVLTRLVGDARREEVIARVREAALTGRQVYWVCPLIEESETLQLQTAVETY HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEECCCCCEEHHHHHHHH ETLAAALPELKVGLVHGRLSPADKAAVMEAFTRNEVQLLVATTVIEVGVDVPNASLMVIE HHHHHHCCHHHEEEEECCCCCHHHHHHHHHHHCCCCEEHHHHHHHHHCCCCCCCCEEEEE HAERFGLAQLHQLRGRVGRGTAASVCVLLYTGPLSLTGRERLKTMRETTDGFEIARRDLE CHHHCCHHHHHHHHHCCCCCCHHHEEEEEEECCCCCCCHHHHHHHHHCCCHHHHHHHCCE IRGPGEFLGARQSGAAMLRFANLETDGWLIDPARDAAARLIAAYPDVVTQHLARWLGARE ECCCHHHHCCCCCCCEEEEEECCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCHH QYLKA HHHCC >Mature Secondary Structure PVSPRRSSAAVADSADPFDADDAALPARSAGERDSDARAAPKRAGPKRGADGRLAQPAA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCC AAPDVEPGAGSDEAGVAAASGASDASGAKRKKKPAADKPVKTADKLAKLGLTRSIDLVLH CCCCCCCCCCCCCCCCEECCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHCCCCEEEEEEE LPMRYEDETTLTPIGELLPGGIAQTEGVVFDNEVAYRPRRQLVVKIQDDDGEQLVLRFLN CCCCCCCCCCCCCHHHHCCCCCCCCCCEEECCCCCCCCCEEEEEEEECCCHHHHHHHHHH FYGSQVKQMAVGQRLRVRGDVRGGFFGMEMVHPAVRVVEVDAPLPQVLTPVYPSTAGVSQ HHHHHHHHHHHCCHHEEEECCCCCEEHHHHHCCCEEEEECCCCCHHHHCCCCCCCCCHHH AYLRKAIENAVERTPLPELLPPEIERDYLKPLGVPTLAQAVRILHHPGVDSDEAALMDGS HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCEECCC HPAWTRIKFEELLAQQLSLKRAHEERRTRTAPAMPRRAATDADALTTRLYAALPFTLTGA CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCEEECCC QARVVDEIAHDLTLPHPMQRLLQGDVGSGKTVVAALAATQAIDAGYQAALMAPTEILAEQ HHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEECCCHHHHHHHH HARKLRAWLEPLGVSVAWLAGSLKAKEKRAAIEAAALGTAQLVIGTHAIIQDTVEFARLG HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC LVIVDEQHRFGVEQRLALRAKAANAANGARDFQPHQLMMSATPIPRTLAMTYYADLEVST EEEEECHHHCCHHHHHHHHHHHCCCCCCCCCCCCHHEEEECCCCCHHEEEEEEECCEEEH IDELPPGRTPVLTRLVGDARREEVIARVREAALTGRQVYWVCPLIEESETLQLQTAVETY HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEECCCCCEEHHHHHHHH ETLAAALPELKVGLVHGRLSPADKAAVMEAFTRNEVQLLVATTVIEVGVDVPNASLMVIE HHHHHHCCHHHEEEEECCCCCHHHHHHHHHHHCCCCEEHHHHHHHHHCCCCCCCCEEEEE HAERFGLAQLHQLRGRVGRGTAASVCVLLYTGPLSLTGRERLKTMRETTDGFEIARRDLE CHHHCCHHHHHHHHHCCCCCCHHHEEEEEEECCCCCCCHHHHHHHHHCCCHHHHHHHCCE IRGPGEFLGARQSGAAMLRFANLETDGWLIDPARDAAARLIAAYPDVVTQHLARWLGARE ECCCHHHHCCCCCCCEEEEEECCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCHH QYLKA HHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]