| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is gltI [H]
Identifier: 115350618
GI number: 115350618
Start: 633236
End: 634129
Strand: Direct
Name: gltI [H]
Synonym: Bamb_0564
Alternate gene names: 115350618
Gene position: 633236-634129 (Clockwise)
Preceding gene: 115350617
Following gene: 115350619
Centisome position: 17.8
GC content: 62.19
Gene sequence:
>894_bases ATGAAATACCACAAGGCAGTCCTGATGGTCGCGGCGCTGTGCGCGTTCGCGAGCGGCGCGCATGCACAGGAGACCGGCAC GCTGAAGAAGATCAAGGACACGGGCGTGATCGCGCTGGGGCACCGCGAATCGTCGATCCCGTTCTCCTACTATGACCAGA ACCAGCAGGTCGTCGGCTATTCGCGCGAATTCCAGATGAAGGTCGTGGACGCGGTGAAGAAGAAGCTGAACCTGCCGAAC CTGCAGGTCAAGAACATCCCGGTCACGTCGCAGAACCGCATCCCGCTCGTGCAGAACGGCACGGTCGACATCGAGTGCGG CTCGACGACCAACAACACCGAGCGTCAGCAGCAAGCCGCGTTCTCCGACACGATCTTCGTGATCGGCACGCGCCTGATGA CGAAGAAGGATTCGGGCGTGAAGGACTTCGCCGACCTGAAGGGCAAGACGGTCGTGACCACCGCCGGCACGACGTCCGAG CGCCTGCTGCGCAAGATGAACAACGACAAGCAGCTCGGCATGAACATCATCAGCGCGAAGGATCACGGCGACTCGTTCAA CACGCTCGAGTCGGGCCGCGCGGTCGCGTTCATGATGGACGACGCGCTGCTCGCGGGCGAGCGCGCGAAGGCCAAGCAGC CGGGCGAGTGGGTGATCGTCGGCACGCCGCAGTCGGAAGAGGCTTACGGCTGCATGATGCGCAAGGGCGATACCGACTTC AAGAAGGTGGTCGACGACGCGATCTCGCAAGTCGAGAAGTCGGGCGAAGCCGCGAAGATCTACGCGAAGTGGTTCGAGAG CCCGATTCCGCCGAAGGGGCTGAACCTGAACTTCCCGCTGTCCGATTCGATGAAGAAGCTGTACGCGAACCCGAACGACA AGGCGCTCGACTGA
Upstream 100 bases:
>100_bases GGCTTCGTACAGGGCGATTCGTAGTGCGGTAAACAACCAGTTCTTTCAAAAATATTACTTTGATACACTGGCGCGGGTTT TAGCAAAGGAGATGACCAAA
Downstream 100 bases:
>100_bases CCACACGGACGTTGACGCAGTAATGACGCTACTGAAACGGAAGAGGCCATGCTTCTTCCGTTTCTTTTTGCTGGAGTCTT GCCTATGTCTTACCACTGGA
Product: extracellular solute-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 297; Mature: 297
Protein sequence:
>297_residues MKYHKAVLMVAALCAFASGAHAQETGTLKKIKDTGVIALGHRESSIPFSYYDQNQQVVGYSREFQMKVVDAVKKKLNLPN LQVKNIPVTSQNRIPLVQNGTVDIECGSTTNNTERQQQAAFSDTIFVIGTRLMTKKDSGVKDFADLKGKTVVTTAGTTSE RLLRKMNNDKQLGMNIISAKDHGDSFNTLESGRAVAFMMDDALLAGERAKAKQPGEWVIVGTPQSEEAYGCMMRKGDTDF KKVVDDAISQVEKSGEAAKIYAKWFESPIPPKGLNLNFPLSDSMKKLYANPNDKALD
Sequences:
>Translated_297_residues MKYHKAVLMVAALCAFASGAHAQETGTLKKIKDTGVIALGHRESSIPFSYYDQNQQVVGYSREFQMKVVDAVKKKLNLPN LQVKNIPVTSQNRIPLVQNGTVDIECGSTTNNTERQQQAAFSDTIFVIGTRLMTKKDSGVKDFADLKGKTVVTTAGTTSE RLLRKMNNDKQLGMNIISAKDHGDSFNTLESGRAVAFMMDDALLAGERAKAKQPGEWVIVGTPQSEEAYGCMMRKGDTDF KKVVDDAISQVEKSGEAAKIYAKWFESPIPPKGLNLNFPLSDSMKKLYANPNDKALD >Mature_297_residues MKYHKAVLMVAALCAFASGAHAQETGTLKKIKDTGVIALGHRESSIPFSYYDQNQQVVGYSREFQMKVVDAVKKKLNLPN LQVKNIPVTSQNRIPLVQNGTVDIECGSTTNNTERQQQAAFSDTIFVIGTRLMTKKDSGVKDFADLKGKTVVTTAGTTSE RLLRKMNNDKQLGMNIISAKDHGDSFNTLESGRAVAFMMDDALLAGERAKAKQPGEWVIVGTPQSEEAYGCMMRKGDTDF KKVVDDAISQVEKSGEAAKIYAKWFESPIPPKGLNLNFPLSDSMKKLYANPNDKALD
Specific function: Part of the binding-protein-dependent transport system for glutamate and aspartate. Binds to both aspartate and glutamate [H]
COG id: COG0834
COG function: function code ET; ABC-type amino acid transport/signal transduction systems, periplasmic component/domain
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 3 family [H]
Homologues:
Organism=Escherichia coli, GI1786876, Length=271, Percent_Identity=70.479704797048, Blast_Score=407, Evalue=1e-115, Organism=Escherichia coli, GI1788228, Length=264, Percent_Identity=25.3787878787879, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1787031, Length=268, Percent_Identity=27.2388059701493, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1788648, Length=238, Percent_Identity=25.6302521008403, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI1788649, Length=240, Percent_Identity=24.1666666666667, Blast_Score=61, Evalue=7e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015683 - InterPro: IPR001638 [H]
Pfam domain/function: PF00497 SBP_bac_3 [H]
EC number: NA
Molecular weight: Translated: 32620; Mature: 32620
Theoretical pI: Translated: 9.43; Mature: 9.43
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKYHKAVLMVAALCAFASGAHAQETGTLKKIKDTGVIALGHRESSIPFSYYDQNQQVVGY CCHHHHHHHHHHHHHHHCCCCCHHCCCHHEECCCCEEEECCCCCCCCEEEECCCCEEEEC SREFQMKVVDAVKKKLNLPNLQVKNIPVTSQNRIPLVQNGTVDIECGSTTNNTERQQQAA CHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCEEECCEEEEEECCCCCCHHHHHHHH FSDTIFVIGTRLMTKKDSGVKDFADLKGKTVVTTAGTTSERLLRKMNNDKQLGMNIISAK HHCEEEEEECHHEECCCCCCHHHHHCCCCEEEEECCCCHHHHHHHHCCCHHHCCEEEECC DHGDSFNTLESGRAVAFMMDDALLAGERAKAKQPGEWVIVGTPQSEEAYGCMMRKGDTDF CCCCCCCHHHCCCEEEEEECCHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHCCCCCCHH KKVVDDAISQVEKSGEAAKIYAKWFESPIPPKGLNLNFPLSDSMKKLYANPNDKALD HHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHCCCCCCCCC >Mature Secondary Structure MKYHKAVLMVAALCAFASGAHAQETGTLKKIKDTGVIALGHRESSIPFSYYDQNQQVVGY CCHHHHHHHHHHHHHHHCCCCCHHCCCHHEECCCCEEEECCCCCCCCEEEECCCCEEEEC SREFQMKVVDAVKKKLNLPNLQVKNIPVTSQNRIPLVQNGTVDIECGSTTNNTERQQQAA CHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCEEECCEEEEEECCCCCCHHHHHHHH FSDTIFVIGTRLMTKKDSGVKDFADLKGKTVVTTAGTTSERLLRKMNNDKQLGMNIISAK HHCEEEEEECHHEECCCCCCHHHHHCCCCEEEEECCCCHHHHHHHHCCCHHHCCEEEECC DHGDSFNTLESGRAVAFMMDDALLAGERAKAKQPGEWVIVGTPQSEEAYGCMMRKGDTDF CCCCCCCHHHCCCEEEEEECCHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHCCCCCCHH KKVVDDAISQVEKSGEAAKIYAKWFESPIPPKGLNLNFPLSDSMKKLYANPNDKALD HHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8905232; 9278503; 10493123; 1091635; 1091636 [H]