| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is maeB [H]
Identifier: 115350586
GI number: 115350586
Start: 596936
End: 599236
Strand: Direct
Name: maeB [H]
Synonym: Bamb_0532
Alternate gene names: 115350586
Gene position: 596936-599236 (Clockwise)
Preceding gene: 115350582
Following gene: 115350587
Centisome position: 16.78
GC content: 66.19
Gene sequence:
>2301_bases ATGTCGACCCAAGCCTCCTCCAAAGCCAAGCTCCGCGAAGCCGCTCTCGATTATCACGAATTCCCGACTCCCGGGAAGAT CGCGATCGCCCCGACCAAGCAGATGATCAACCAGCGCGACCTCGCGCTCGCGTATTCGCCGGGCGTCGCGTATGCGTGCG AGGAGATCGTCGAGAACCCGCTGAACGCCGCGCGCTTCACCGCGCGCAGCAACCTGGTCGGCGTGGTCACGAACGGCACC GCGGTGCTCGGGCTCGGCAACATCGGCCCGCTCGCGTCGAAGCCGGTGATGGAAGGCAAGGCCGTCCTGTTCAAGAAGTT CGCCGGCATCGACGTGTTCGACATCGAACTGAACGAGTCGGACCCGCACAAGCTGGTCGACGTGATCGCCGCGCTGGAGC CGACCTTCGGCGGGATCAACCTGGAAGACATCAAGGCGCCGGACTGCTTCATCGTCGAGCGCGAAGCGCGCAAGCGGATG AAGATCCCGGTGTTCCACGACGACCAGCACGGCACCGCGATCGTCGTGGCCGCGGCCGTCACGAACGGCCTGAAGGTCGT CGGCAAGGACATCAAGAAGGTGAAGCTCGTCGCGTCGGGCGCCGGCGCGGCCGCGCTCGCGTGTCTGGACCTGCTCGTCG ACATCGGGCTGCCGATCGAGAACATCCTGGTGACCGACCTGGCCGGCGTGGTCTACAAGGGACGCACCGAGCTGATGGAT CCGGACAAGGAGCGTTTCGCGCGCGAAACCGAAGCCCGCACGCTGGCCGAGGTGATCGAAGGCGCGGACATCTTCCTCGG CCTGTCGGCCGCGGGCGTGCTGAAGCAGGAGATGGTGAAGGGCATGGCCGAGCGCCCGCTGATCCTCGCGCTCGCGAACC CGACGCCGGAAATCCTGCCGGAACTGGCGCTCGAAGTGCGCCCCGACGCCGTGCTGGCCACCGGCCGCACCGACTATCCG AACCAGGTCAACAACGTCCTGTGCTTCCCGTTCATCTTCCGCGGCGCGCTCGACGTCGGCGCGACGACGATCACGCGTGA AATGGAGATCGCGGCCGTCAACGCGATCGCCGAGCTCGCGCAGCAGGAGCAGAGCGACATCGTCGCGACCGCGTACGGCA TTCAGGACCTGTCGTTCGGGCCCGACTACCTGATTCCGAAGCCGTTCGATCCGCGCCTGATCGTCAAGATCGCGCCGGCC GTCGCGCAGGCCGCGATGGACGGCGGCGTCGCGACGCGCCCGATCGAGGACATGGAAGCGTACCGCGTTCACCTGCAGCA GTTCGTGTATCACAGCGGCACGACGATGAAGCCGATCTTCCAGATCGCGCGCGCCGCGCCGGCAGAGAAAAAGCGCGTGG TGTTCGCGGAAGGCGAGGAAGAGCGCGTGTTGCGCGCCGTTCAGATCATCGTCGACGAGAAGCTCGCGACGCCGATCCTG ATCGGCCGCCCGTCGGTGATCGAGCACCGTATCCAGCGCTACGGCCTGCGCCTCACGCCGGGCACCGACTTCACGGTCGT CAACACCGAGCACGACGAACGCTACCGCGACTTCTGGCAGACGTACTACAAGATGATGTCGCGCAAGGGCATCAGCGAGC AGCTGGCCCGCGTGGAAATGCGCCGCCGCACGACGCTGATCGGCTCGATGCTGGTGAAGAAGGGCGAAGCGGACGGGATG ATCTGCGGCACGATCAGCACGACGCACCGCCACCTGCACTTCATCGACCAGGTGATCGGCAAGCGCCCGGGCTGCAGCGT GTACGCGGCGATGAACGGCCTCGTGCTGCCGGGTCGCCAGATTTTCCTGGTCGATACGCACGTGAACGTCGATCCGACGC CGGAGGAACTCGCCGAGATCACGATCATGGCTGCGGAAGAAGTGCGCCGGTTCGGCATCGAGCCGAAGGTCGCGCTGGTG TCGCACTCGAATTTCGGCACGAGCAACGCCCCTTCGGCGAAGAAGATGCGCGATACGCTCGCGATCCTGCAGGAACGCGC GCCGGAGCTGAAGGTCGACGGCGAAATGCACGGCGACGTGGCGCTCGACGCGGCGCTGCGCAAGGAAATCCTGCCGGAAT CGACGCTCGAAGGCGACGCGAACCTGCTGATCCTGCCGAACATCGACGCCGCGAACATCGCGTACAACCTGCTGAAGACG GCCGCCGGCAACAACATCGCGATCGGGCCGATCCTGCTCGGCGCGGCGCAGCCGGTGCACGTGCTGACCGAATCGGCGAC GGTTCGCCGCATCGTCAACATGGCGGCGCTGCTGGTCGCCGACGTGAACGCCGCACGCTGA
Upstream 100 bases:
>100_bases TTTTGTCGCGGCTGTCGCACCCGAATCGCCGGTCTGGCGGCCTTGGATTGGCGCTACAATGCCGTCGAACAGTTATTCTA ATCCGCCCGCCAAGAGACAC
Downstream 100 bases:
>100_bases GCCGGAACGAACGCGCGGCGCCGGTCAACCGGTGCCGTGCGTCGGGCGAAATTGTAAACAAAAGCAAAAAGAGGCGTGCC CGCAAGGGGCACGCCGTCAG
Product: malic enzyme
Products: NA
Alternate protein names: NADP-ME [H]
Number of amino acids: Translated: 766; Mature: 765
Protein sequence:
>766_residues MSTQASSKAKLREAALDYHEFPTPGKIAIAPTKQMINQRDLALAYSPGVAYACEEIVENPLNAARFTARSNLVGVVTNGT AVLGLGNIGPLASKPVMEGKAVLFKKFAGIDVFDIELNESDPHKLVDVIAALEPTFGGINLEDIKAPDCFIVEREARKRM KIPVFHDDQHGTAIVVAAAVTNGLKVVGKDIKKVKLVASGAGAAALACLDLLVDIGLPIENILVTDLAGVVYKGRTELMD PDKERFARETEARTLAEVIEGADIFLGLSAAGVLKQEMVKGMAERPLILALANPTPEILPELALEVRPDAVLATGRTDYP NQVNNVLCFPFIFRGALDVGATTITREMEIAAVNAIAELAQQEQSDIVATAYGIQDLSFGPDYLIPKPFDPRLIVKIAPA VAQAAMDGGVATRPIEDMEAYRVHLQQFVYHSGTTMKPIFQIARAAPAEKKRVVFAEGEEERVLRAVQIIVDEKLATPIL IGRPSVIEHRIQRYGLRLTPGTDFTVVNTEHDERYRDFWQTYYKMMSRKGISEQLARVEMRRRTTLIGSMLVKKGEADGM ICGTISTTHRHLHFIDQVIGKRPGCSVYAAMNGLVLPGRQIFLVDTHVNVDPTPEELAEITIMAAEEVRRFGIEPKVALV SHSNFGTSNAPSAKKMRDTLAILQERAPELKVDGEMHGDVALDAALRKEILPESTLEGDANLLILPNIDAANIAYNLLKT AAGNNIAIGPILLGAAQPVHVLTESATVRRIVNMAALLVADVNAAR
Sequences:
>Translated_766_residues MSTQASSKAKLREAALDYHEFPTPGKIAIAPTKQMINQRDLALAYSPGVAYACEEIVENPLNAARFTARSNLVGVVTNGT AVLGLGNIGPLASKPVMEGKAVLFKKFAGIDVFDIELNESDPHKLVDVIAALEPTFGGINLEDIKAPDCFIVEREARKRM KIPVFHDDQHGTAIVVAAAVTNGLKVVGKDIKKVKLVASGAGAAALACLDLLVDIGLPIENILVTDLAGVVYKGRTELMD PDKERFARETEARTLAEVIEGADIFLGLSAAGVLKQEMVKGMAERPLILALANPTPEILPELALEVRPDAVLATGRTDYP NQVNNVLCFPFIFRGALDVGATTITREMEIAAVNAIAELAQQEQSDIVATAYGIQDLSFGPDYLIPKPFDPRLIVKIAPA VAQAAMDGGVATRPIEDMEAYRVHLQQFVYHSGTTMKPIFQIARAAPAEKKRVVFAEGEEERVLRAVQIIVDEKLATPIL IGRPSVIEHRIQRYGLRLTPGTDFTVVNTEHDERYRDFWQTYYKMMSRKGISEQLARVEMRRRTTLIGSMLVKKGEADGM ICGTISTTHRHLHFIDQVIGKRPGCSVYAAMNGLVLPGRQIFLVDTHVNVDPTPEELAEITIMAAEEVRRFGIEPKVALV SHSNFGTSNAPSAKKMRDTLAILQERAPELKVDGEMHGDVALDAALRKEILPESTLEGDANLLILPNIDAANIAYNLLKT AAGNNIAIGPILLGAAQPVHVLTESATVRRIVNMAALLVADVNAAR >Mature_765_residues STQASSKAKLREAALDYHEFPTPGKIAIAPTKQMINQRDLALAYSPGVAYACEEIVENPLNAARFTARSNLVGVVTNGTA VLGLGNIGPLASKPVMEGKAVLFKKFAGIDVFDIELNESDPHKLVDVIAALEPTFGGINLEDIKAPDCFIVEREARKRMK IPVFHDDQHGTAIVVAAAVTNGLKVVGKDIKKVKLVASGAGAAALACLDLLVDIGLPIENILVTDLAGVVYKGRTELMDP DKERFARETEARTLAEVIEGADIFLGLSAAGVLKQEMVKGMAERPLILALANPTPEILPELALEVRPDAVLATGRTDYPN QVNNVLCFPFIFRGALDVGATTITREMEIAAVNAIAELAQQEQSDIVATAYGIQDLSFGPDYLIPKPFDPRLIVKIAPAV AQAAMDGGVATRPIEDMEAYRVHLQQFVYHSGTTMKPIFQIARAAPAEKKRVVFAEGEEERVLRAVQIIVDEKLATPILI GRPSVIEHRIQRYGLRLTPGTDFTVVNTEHDERYRDFWQTYYKMMSRKGISEQLARVEMRRRTTLIGSMLVKKGEADGMI CGTISTTHRHLHFIDQVIGKRPGCSVYAAMNGLVLPGRQIFLVDTHVNVDPTPEELAEITIMAAEEVRRFGIEPKVALVS HSNFGTSNAPSAKKMRDTLAILQERAPELKVDGEMHGDVALDAALRKEILPESTLEGDANLLILPNIDAANIAYNLLKTA AGNNIAIGPILLGAAQPVHVLTESATVRRIVNMAALLVADVNAAR
Specific function: Unknown
COG id: COG0281
COG function: function code C; Malic enzyme
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the phosphate acetyltransferase and butyryltransferase family [H]
Homologues:
Organism=Homo sapiens, GI62420882, Length=352, Percent_Identity=28.6931818181818, Blast_Score=86, Evalue=1e-16, Organism=Homo sapiens, GI62420880, Length=352, Percent_Identity=28.6931818181818, Blast_Score=86, Evalue=1e-16, Organism=Homo sapiens, GI239049447, Length=352, Percent_Identity=28.6931818181818, Blast_Score=86, Evalue=1e-16, Organism=Homo sapiens, GI4505143, Length=343, Percent_Identity=26.8221574344023, Blast_Score=86, Evalue=1e-16, Organism=Homo sapiens, GI4505145, Length=369, Percent_Identity=26.8292682926829, Blast_Score=69, Evalue=1e-11, Organism=Escherichia coli, GI1788806, Length=753, Percent_Identity=61.7529880478088, Blast_Score=966, Evalue=0.0, Organism=Escherichia coli, GI1788635, Length=322, Percent_Identity=32.9192546583851, Blast_Score=160, Evalue=2e-40, Organism=Escherichia coli, GI1788800, Length=326, Percent_Identity=31.2883435582822, Blast_Score=149, Evalue=7e-37, Organism=Caenorhabditis elegans, GI17537199, Length=464, Percent_Identity=25.2155172413793, Blast_Score=74, Evalue=2e-13, Organism=Saccharomyces cerevisiae, GI6322823, Length=239, Percent_Identity=30.9623430962343, Blast_Score=85, Evalue=5e-17, Organism=Drosophila melanogaster, GI281362672, Length=425, Percent_Identity=27.0588235294118, Blast_Score=89, Evalue=1e-17, Organism=Drosophila melanogaster, GI21356279, Length=425, Percent_Identity=27.0588235294118, Blast_Score=89, Evalue=1e-17, Organism=Drosophila melanogaster, GI281362674, Length=425, Percent_Identity=27.0588235294118, Blast_Score=89, Evalue=1e-17, Organism=Drosophila melanogaster, GI78707242, Length=408, Percent_Identity=25.9803921568627, Blast_Score=79, Evalue=9e-15, Organism=Drosophila melanogaster, GI78707238, Length=408, Percent_Identity=25.9803921568627, Blast_Score=79, Evalue=9e-15, Organism=Drosophila melanogaster, GI78707240, Length=349, Percent_Identity=26.3610315186246, Blast_Score=77, Evalue=6e-14, Organism=Drosophila melanogaster, GI24646388, Length=349, Percent_Identity=28.3667621776504, Blast_Score=75, Evalue=2e-13, Organism=Drosophila melanogaster, GI24646386, Length=349, Percent_Identity=28.3667621776504, Blast_Score=75, Evalue=2e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015884 - InterPro: IPR012301 - InterPro: IPR012302 - InterPro: IPR012188 - InterPro: IPR016040 - InterPro: IPR002505 [H]
Pfam domain/function: PF00390 malic; PF03949 Malic_M; PF01515 PTA_PTB [H]
EC number: =1.1.1.40 [H]
Molecular weight: Translated: 83093; Mature: 82962
Theoretical pI: Translated: 5.93; Mature: 5.93
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTQASSKAKLREAALDYHEFPTPGKIAIAPTKQMINQRDLALAYSPGVAYACEEIVENP CCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHHCCCCCEEEEECCCHHHHHHHHHHCC LNAARFTARSNLVGVVTNGTAVLGLGNIGPLASKPVMEGKAVLFKKFAGIDVFDIELNES CHHHHHHHCCCEEEEEECCEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEEEECCC DPHKLVDVIAALEPTFGGINLEDIKAPDCFIVEREARKRMKIPVFHDDQHGTAIVVAAAV CHHHHHHHHHHHCCCCCCCCHHHCCCCCEEEEEHHHHCCCCCCEEECCCCCCEEEEEEHH TNGLKVVGKDIKKVKLVASGAGAAALACLDLLVDIGLPIENILVTDLAGVVYKGRTELMD HCCHHHHCCCHHEEEEEECCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHCCC PDKERFARETEARTLAEVIEGADIFLGLSAAGVLKQEMVKGMAERPLILALANPTPEILP CCHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHH ELALEVRPDAVLATGRTDYPNQVNNVLCFPFIFRGALDVGATTITREMEIAAVNAIAELA HHHHHCCCCEEEECCCCCCCHHHCCEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH QQEQSDIVATAYGIQDLSFGPDYLIPKPFDPRLIVKIAPAVAQAAMDGGVATRPIEDMEA HHHHCCEEEEEECCEECCCCCCCCCCCCCCCEEEEEECHHHHHHHHCCCCCCCCHHHHHH YRVHLQQFVYHSGTTMKPIFQIARAAPAEKKRVVFAEGEEERVLRAVQIIVDEKLATPIL HHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCEE IGRPSVIEHRIQRYGLRLTPGTDFTVVNTEHDERYRDFWQTYYKMMSRKGISEQLARVEM ECCCHHHHHHHHHCCCEECCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH RRRTTLIGSMLVKKGEADGMICGTISTTHRHLHFIDQVIGKRPGCSVYAAMNGLVLPGRQ HHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHCCCCCCEEEEECCCEECCCCE IFLVDTHVNVDPTPEELAEITIMAAEEVRRFGIEPKVALVSHSNFGTSNAPSAKKMRDTL EEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHHH AILQERAPELKVDGEMHGDVALDAALRKEILPESTLEGDANLLILPNIDAANIAYNLLKT HHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCCHHHHHHHHHHH AAGNNIAIGPILLGAAQPVHVLTESATVRRIVNMAALLVADVNAAR CCCCCEEECCEEECCCCCHHHHHCHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure STQASSKAKLREAALDYHEFPTPGKIAIAPTKQMINQRDLALAYSPGVAYACEEIVENP CCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHHCCCCCEEEEECCCHHHHHHHHHHCC LNAARFTARSNLVGVVTNGTAVLGLGNIGPLASKPVMEGKAVLFKKFAGIDVFDIELNES CHHHHHHHCCCEEEEEECCEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEEEECCC DPHKLVDVIAALEPTFGGINLEDIKAPDCFIVEREARKRMKIPVFHDDQHGTAIVVAAAV CHHHHHHHHHHHCCCCCCCCHHHCCCCCEEEEEHHHHCCCCCCEEECCCCCCEEEEEEHH TNGLKVVGKDIKKVKLVASGAGAAALACLDLLVDIGLPIENILVTDLAGVVYKGRTELMD HCCHHHHCCCHHEEEEEECCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHCCC PDKERFARETEARTLAEVIEGADIFLGLSAAGVLKQEMVKGMAERPLILALANPTPEILP CCHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHH ELALEVRPDAVLATGRTDYPNQVNNVLCFPFIFRGALDVGATTITREMEIAAVNAIAELA HHHHHCCCCEEEECCCCCCCHHHCCEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH QQEQSDIVATAYGIQDLSFGPDYLIPKPFDPRLIVKIAPAVAQAAMDGGVATRPIEDMEA HHHHCCEEEEEECCEECCCCCCCCCCCCCCCEEEEEECHHHHHHHHCCCCCCCCHHHHHH YRVHLQQFVYHSGTTMKPIFQIARAAPAEKKRVVFAEGEEERVLRAVQIIVDEKLATPIL HHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCEE IGRPSVIEHRIQRYGLRLTPGTDFTVVNTEHDERYRDFWQTYYKMMSRKGISEQLARVEM ECCCHHHHHHHHHCCCEECCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH RRRTTLIGSMLVKKGEADGMICGTISTTHRHLHFIDQVIGKRPGCSVYAAMNGLVLPGRQ HHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHCCCCCCEEEEECCCEECCCCE IFLVDTHVNVDPTPEELAEITIMAAEEVRRFGIEPKVALVSHSNFGTSNAPSAKKMRDTL EEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHHH AILQERAPELKVDGEMHGDVALDAALRKEILPESTLEGDANLLILPNIDAANIAYNLLKT HHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCCHHHHHHHHHHH AAGNNIAIGPILLGAAQPVHVLTESATVRRIVNMAALLVADVNAAR CCCCCEEECCEEECCCCCHHHHHCHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9205837; 9278503; 36376 [H]